mRNA_H-canaliculatus_F_contig10720.690.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10720.690.1
Unique NamemRNA_H-canaliculatus_F_contig10720.690.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10720.690.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 2.830e-73
Identity = 129/152 (84.87%), Postives = 142/152 (93.42%), Query Frame = 2 
Query:  566 RIEQLKVYRRNGITTLADGIEFDKARQRRQEELASQKHRESASYLYDGHATAKASTGNDRNRRYKDRNKGGGMSDGNGEDGRGGN-LLDVDGAPGVEYLSPKERLLCSQLHLLPGYFLSIKTAMVQECAKSGCLKKSNLSGLATLDKPRLEK 1018
            RIE L++YR+NGITT+A+GIEFDKARQRRQEELASQKHRESASYLYDGHA+AK +TG DRNRRYKDRNKGGGMSDGNG+DGR GN LLDV+GAPGVEYLSP ER LCSQLHLLPGY+L IK AM+QEC KSGCLKKSNL+GLATLDKPRL+K
Sbjct:  446 RIETLQMYRQNGITTIAEGIEFDKARQRRQEELASQKHRESASYLYDGHASAKGNTG-DRNRRYKDRNKGGGMSDGNGDDGRNGNNLLDVEGAPGVEYLSPAERALCSQLHLLPGYYLVIKNAMIQECVKSGCLKKSNLAGLATLDKPRLDK 596
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10720.690.1 vs. uniprot
Match: D7FRV7_ECTSI (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV7_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 8.040e-47
Identity = 101/159 (63.52%), Postives = 119/159 (74.84%), Query Frame = 2 
Query:  566 RIEQLKVYRRNGITTLADGIEFDKARQRRQEELASQKHRESASYLYDGHATAKASTGN--------DRNRRYKDRNKGGGMSDGNGEDGRGGNLLDVDGAPGVEYLSPKERLLCSQLHLLPGYFLSIKTAMVQECAKSGCLKKSNLSGLATLDKPRLEK 1018
            RIEQL+VYR+NGITTLA+G EF+ A+++RQEELAS+KHRESASYLY+G     +ST +        DRN R  +R K GG  DG GE     NLLD+ GAPGVEYLSP ER+LCSQLHLLPGY+L IK AM+QECA++GCLKK  L  LA LD PRL K
Sbjct:  433 RIEQLQVYRQNGITTLAEGAEFEIAKKKRQEELASKKHRESASYLYEGVGQGGSSTSSKANIRNIRDRNYRCSNRQKDGG-GDGGGE-ANNDNLLDISGAPGVEYLSPAERVLCSQLHLLPGYYLVIKNAMIQECARAGCLKKKRLPDLAVLDTPRLNK 589
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10720.690.1 vs. uniprot
Match: F0WRK6_9STRA (Transcriptional adapter n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WRK6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.400e-16
Identity = 64/172 (37.21%), Postives = 94/172 (54.65%), Query Frame = 2 
Query:  554 RRSTRIEQLKVYRRNGITTLADGIEFDKARQRRQEELASQKHRESASYLYDGHATAKASTGNDRNRRYKDR--------------NKGGGMSDGNGEDGRGGNLLD----VDGAPGVEYLSPKERLLCSQLHLLPGYFLSIKTAMVQECAKSGCLKKSNLSGLATLDKPRLE 1015
            R   +I  L+ YRRNGI TLA+   +++ +++R+ ELA QK R+ ASYLYD  +T   S G DR  RY++R              NK     D + ++GRG +       VDGAPG   L+P E+ LCS+L +LP ++L IK  +++EC + G L       +  LD  + E
Sbjct:  364 RLQKQIVLLQEYRRNGIKTLAEAEMYEQEKKKRETELAMQKQRDDASYLYD--STRTNSNGKDRASRYRERLTGLHDDEGSDTSSNKRPRTGDSSEDNGRGVSKRIATSLVDGAPGAHLLAPTEKELCSKLQILPKHYLVIKDVLIRECYRLGYLTPDTARQIVKLDVEKSE 533
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10720.690.1 vs. uniprot
Match: A0A024G4W7_9STRA (Transcriptional adapter n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4W7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.130e-15
Identity = 63/172 (36.63%), Postives = 93/172 (54.07%), Query Frame = 2 
Query:  554 RRSTRIEQLKVYRRNGITTLADGIEFDKARQRRQEELASQKHRESASYLYDGHATAKASTGNDRNRRYKDR--------------NKGGGMSDGNGEDGRGGNLLD----VDGAPGVEYLSPKERLLCSQLHLLPGYFLSIKTAMVQECAKSGCLKKSNLSGLATLDKPRLE 1015
            R   +I  L+ YRRNGI TLA+   +++ +++R+ ELA QK R++ASYLYD  +T     G DR  RY++R              NK   + +   + GRG +       VDGAPG   L+P E+ LCS+L LLP ++L IK  +++EC + G L       +  LD  + E
Sbjct:  367 RLQKQIVLLQEYRRNGIKTLAEAELYEQEKKKRETELAMQKQRDNASYLYD--STRSTYNGKDRASRYRERFTGLQDEDVSDTSSNKRSRVDEAGEDAGRGTSKRIATSLVDGAPGAHLLAPTEKELCSKLQLLPKHYLVIKDVLIRECYRMGYLTPDAAQQIVKLDVEKSE 536
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10720.690.1 vs. uniprot
Match: A0A662X9Q8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9Q8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.130e-13
Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 2 
Query:  554 RRSTRIEQLKVYRRNGITTLADGIEFDKARQRRQEELASQKHRESASYLYDGHATAKASTGNDRNRRYKDRNKGG-GMSDGNGEDGRGGNLLD---------------VDGAPGVEYLSPKERLLCSQLHLLPGYFLSIKTAMVQECAKSGCLKKSNLSGLATLD 1000
            R   +I  L+ YR+NG+ TLA+   +D  +++R+ + A QK R++ASYLY+    A  S+G DR  R++ R +G  G +  +    RG   +                +DG PG + L+PKE+ LCS+L LLP ++L IK A+V+EC + G L K        +D
Sbjct:  400 RLKKQILLLQEYRKNGVRTLAEAELYDAEKKKRELDQALQKQRDNASYLYESGRAA--SSGRDRANRWQSREQGANGDAVADNPRTRGAAAVSATTASGVKAIAATFSIDGTPGCDLLTPKEKELCSKLRLLPKHYLVIKDALVRECYRLGYLTKKMAKETVQID 562
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10720.690.1 vs. uniprot
Match: A0A1E4TJV2_9ASCO (Transcriptional adapter 2 n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TJV2_9ASCO)

HSP 1 Score: 57.4 bits (137), Expect = 1.720e-5
Identity = 51/158 (32.28%), Postives = 84/158 (53.16%), Query Frame = 2 
Query:  566 RIEQLKVYRRNGITTLADGIEFDKARQRRQEELASQKHRESASYLYDGHATAKASTGN----------DRNRRYKDRNKGGGMSDGNGEDGRGGNL--LDVDGAPGVEYLSPKERLLCSQLHLLPGYFLSIKTAMVQECAKSG-CLKKSNLSGLATLD 1000
            RI QL+ YRRNGITTLA   ++++ +  R   LA++    ++S L +G++++ +S G            R R Y +               R   +  LD+  AP VE+LSP+E++LCS+L +LP  +++IK  + +E  ++G  LKK     L  +D
Sbjct:  298 RIAQLQEYRRNGITTLARAEKYERDKAHRL--LATRNSFGASSSLSNGYSSS-SSFGRYGGSISYSPLRRERAYMESRP------------RKQTVTPLDISNAPDVEFLSPEEQVLCSELRILPKPYIAIKETLFRELLRTGGILKKRTARELIKID 440
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10720.690.1 vs. uniprot
Match: UPI001CFD951F (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFD951F)

HSP 1 Score: 56.2 bits (134), Expect = 5.970e-5
Identity = 49/153 (32.03%), Postives = 79/153 (51.63%), Query Frame = 2 
Query:  563 TRIEQLKVYRRNGITTLADGIEFDKARQRRQEELASQKHRESASYLYDGHATAKASTGNDRNRRYKDRNKGGGMSDGNGEDGRGGNLLDVDGAPGVEYLSPKERLLCSQLHLLPGYFLSIKTAMVQECAKSGCLKKSNLSGLAT-LDKPRLEK 1018
            TRI++LK YR NG+T+L+    +D   ++R+ +L  +K +E A        T K  T    +RR  D   G           +  N L      G+E LS +ER+LCS+LH+LP  ++ IK  + +E   +G + KS    L + +DK +++K
Sbjct:  455 TRIQELKEYRANGLTSLSQCATYDADNKKREADLEFKKAKEGA--------TPKVPT----SRRNFDHLMG---------TPKDTNTL------GMELLSKRERILCSELHILPRQYMLIKDTLTRESLLTGFVSKSAACKLLSDMDKDQVKK 580
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10720.690.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JL08_9PHAE2.830e-7384.87Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
D7FRV7_ECTSI8.040e-4763.52Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
F0WRK6_9STRA3.400e-1637.21Transcriptional adapter n=1 Tax=Albugo laibachii N... [more]
A0A024G4W7_9STRA1.130e-1536.63Transcriptional adapter n=1 Tax=Albugo candida Tax... [more]
A0A662X9Q8_9STRA4.130e-1335.15Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A1E4TJV2_9ASCO1.720e-532.28Transcriptional adapter 2 n=1 Tax=Tortispora casei... [more]
UPI001CFD951F5.970e-532.03uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10720contigH-canaliculatus_F_contig10720:1101..4298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1018
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10720.690.1prot_H-canaliculatus_F_contig10720.690.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10720 1154..3984 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928735.3908927-UTR-H-canaliculatus_F_contig10720:1100..11531622928735.3908927-UTR-H-canaliculatus_F_contig10720:1100..1153Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10720 1101..1153 -
1696845544.2897615-UTR-H-canaliculatus_F_contig10720:1100..11531696845544.2897615-UTR-H-canaliculatus_F_contig10720:1100..1153Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10720 1101..1153 -
1622928735.5025413-UTR-H-canaliculatus_F_contig10720:3984..42981622928735.5025413-UTR-H-canaliculatus_F_contig10720:3984..4298Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10720 3985..4298 -
1696845544.342468-UTR-H-canaliculatus_F_contig10720:3984..42981696845544.342468-UTR-H-canaliculatus_F_contig10720:3984..4298Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10720 3985..4298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928735.4063625-CDS-H-canaliculatus_F_contig10720:1153..11931622928735.4063625-CDS-H-canaliculatus_F_contig10720:1153..1193Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10720 1154..1193 -
1696845544.301163-CDS-H-canaliculatus_F_contig10720:1153..11931696845544.301163-CDS-H-canaliculatus_F_contig10720:1153..1193Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10720 1154..1193 -
1622928735.4221783-CDS-H-canaliculatus_F_contig10720:1814..19671622928735.4221783-CDS-H-canaliculatus_F_contig10720:1814..1967Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10720 1815..1967 -
1696845544.3114486-CDS-H-canaliculatus_F_contig10720:1814..19671696845544.3114486-CDS-H-canaliculatus_F_contig10720:1814..1967Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10720 1815..1967 -
1622928735.4406297-CDS-H-canaliculatus_F_contig10720:2767..28781622928735.4406297-CDS-H-canaliculatus_F_contig10720:2767..2878Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10720 2768..2878 -
1696845544.3227627-CDS-H-canaliculatus_F_contig10720:2767..28781696845544.3227627-CDS-H-canaliculatus_F_contig10720:2767..2878Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10720 2768..2878 -
1622928735.4873059-CDS-H-canaliculatus_F_contig10720:3637..39841622928735.4873059-CDS-H-canaliculatus_F_contig10720:3637..3984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10720 3638..3984 -
1696845544.333892-CDS-H-canaliculatus_F_contig10720:3637..39841696845544.333892-CDS-H-canaliculatus_F_contig10720:3637..3984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10720 3638..3984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10720.690.1

>prot_H-canaliculatus_F_contig10720.690.1 ID=prot_H-canaliculatus_F_contig10720.690.1|Name=mRNA_H-canaliculatus_F_contig10720.690.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=217bp
MRPRRTRMRCLSSPVGFNPIAAMQHGVSRHTRPRLSVLVAGATDLGNGDR
ERAALASRFVRVRARLRYHPPASPHRPHRAAAAPASSSSRCTGGTASRPS
RTGSSSTRPARGARKSWHPRSTASPRPTSTTATPRRRPAQETTGTGATRT
GTRAAGCPTGTAKTGGGATSSMSTGPPGSSTSRPRSACCARSSTCCRATS
SPSRLPWCRSAPSRAA*
back to top

mRNA from alignment at H-canaliculatus_F_contig10720:1101..4298-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10720.690.1 ID=mRNA_H-canaliculatus_F_contig10720.690.1|Name=mRNA_H-canaliculatus_F_contig10720.690.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3198bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10720:1101..4298- (Hapterophycus canaliculatus Oshoro5f female)
GTTCCTGTCGTCCGCTCCGTCTCGCCGCCGGAGACTGAAGCTGCCATGAC
GCATCGGACTGTGGAACCGCCGACGAATCGGACCGTCGGCCCCTTGGTTC
TGCTCTCGTTGTCCGCGTGCGCTCTCAGCCTGCCCTCCTTCGCCCCCTTT
CTTGTTTTTCGTCCCGCCTTGTTTCGCCCCCCCTGTGACATAACATCGAT
TCCCAAATCGGAAAGCAGACCAGCGGCGAAGTAATTGCCCGTGCGTGAAC
CGGGTCGCCGGTGTGTTGTGGTCGAGAAGGCAGGGGGCGGGCAGCGTTGC
TTATTTCGTGTTCCATGAGGCCACGCCGCACGCGCATGCGGTGCCTCTCC
TCTCCTGTCGGTTTTAACCCCATCGCAGCGATGCAACACGGTGTCAGTCG
GCATACCCGCCCGCGTCTGTCTGTTCTCGTTGCTGGAGCCACCGACCTCG
GCAACGGTGACCGTGAACGCGCCGCCCTCGCCTCCCGCTTCGTCCGCGTC
CGTGCCCGCCTCCGGTACCACCCTCCGGCCTCACCCCACCGACCCCACCG
CGCCGCCGCAGCACCCGCATCGAGCAGCTCAAGGTGTACAGGAGGAACGG
CATCACGACCCTCGCGGACGGGATCGAGTTCGACAAGGCCCGCCAGAGGC
GCCAGGAAGAGGTGAGGCGGAGACGACGACGACGACATCAACAACGACGA
CTATGACGACTCTCGGCTGCGATCTCTTGCCCAGACCCTCCTGGGCGCGG
TGACAGATTTCTTCTCTTCTTCTTCGCGTTGCCGCGGCGTCTCCGGACCT
CGTTGGTGCGCGGAATTCTCTTTCCGCGTCCTTCGAGGCGTCGGGGCGGC
GGGTCTGCCGCCGCTTGGGCAACGGCGCGGTTCGCGTAAGGGTGCCCTTC
TCGCCTTGCGGTCGGCGGCGTGGGCCGCCGCCCACGAAGAATCAGACAGT
GCTTCTCGCCCATCGGATTGGTGGTATTGTATTTGCCTTGTGGGGGAAAT
ACACGTTTCTGGCTCGCGACTTGGGACACCTGATGGTTGCTGTTGCTGTT
GCTGTCGCTGTTGCTGTTGCTGTCGCCGTCGCCGTCGCTGTTGCCGGACA
ATTCATTGCCGTTGCCGCCGTTGCCGTGGTTGGCGCCGCTTTTCTTCATG
GATTTTTTGGGGAAAACCCAGCGGGGAGAAGGTCCGGCCGAAATGCTCGG
GAGTGCCGAGGAACGGTAGGCACCGAGGGCACGCGGGCCTGCGCCTCCCG
CGCGTCGTCGTCGATGCCGCTCACAAGTGCGTTTCTCGCACGATGCGTCG
CTTCGTGACAGCGGTCTGCGGCGTGCCCTCCACACCCCTTTTCCCTTTCG
TTTGCTTCCCTCTGCTTCGCTACGCGGTCGCGCCCACGCTCTTCGGACTT
TTTCGTTCCTTTTTCGTCAGCTGGCATCCCAGAAGCACCGCGAGTCCGCG
TCCTACCTCTACGACGGCCACGCCACGGCGAAGGCCAGCACAGGAAACGA
CCGGAACAGGCGCTACAAGGACAGGAACAAGGTCGGTTCGAGCCTGCCAG
CTGGAACTCTTTTTTTTTTTGCTCTTGACTCTTTTTTTTTCCTTTTCTCG
CACGTCTGGGGCTCTTTCATCAGCCTCTTTCCTTCCAGCCGGCGAGGGTC
TTGGCTTGTCTGTCCGGGGGCCGGGCTATGAGGACGGAGTGAATGTGGGC
GTCGGTAAACCGCGCTGCGGGAAAATGGATATGGTTGCGGCCCAGCGCCC
GTGAGTGCTGTCGTCGTCGTCGTCGTTGTCGTCGTCGTCGCGTCTGTGTT
TGTTAGCCGACACCCATTTGTAAAGGCTGTTGTCTCCAAGGTCAGGAATG
GAGTCGATGGCTTACCGGAGGTGCGACGGAGGGTAGACCGCCGGGTTCAG
AGCTGTTCCCCTCCTCTCTGTTTTTGCTTCGTCTCCCGGGTTTGCCGTGC
TCCGTTGAGTTGTGGCCCTGACGAGCGCCACCGCGACAGACGCTGCAAGC
GCACGCACAAGGTCGCTTCTGCCATCCGTTACACCAGATGGTTTTCTGGG
GTCGTCAGGTTAACCGCTATTTAGCCTGAGGGCTTACTCCTGGTTGTTGG
GACTTCAAGTGTGTTCGGTCTGTCCCGGGGGTGATCCGATCCGCCGCGTC
CACGATGGCGACCGGGGGCCGCGTCTCTCTCTGCGCACGTCGTCTCCCCC
CCCCCCCCCCAAACACCATTTTCCTCCGAGGCGGCAAATGACACGATTGC
ATTCCGTTTACCCACGCACGTGTACGCGTGTACCGCCCCCCCCCTCCCCG
CCCCCCGTCCCCCGTCCCCCTACTCGCCCAGGGCGGCGGGATGTCCGACG
GGAACGGCGAAGACGGGCGGGGGGGCAACCTCCTCGATGTCGACGGGGCC
CCCGGGGTCGAGTACCTCTCGCCCAAGGAGCGCCTGCTGTGCTCGCAGCT
CCACCTGCTGCCGGGCTACTTCCTCTCCATCAAGGTGCGTGCGCGGCATG
TAGGTGGGCGGGCGGACGCACCGCGTGACCCCCCTGTGCAGTAGAAGAGC
AAGAACAATGTGTGGGCGTTTTTTTTTTTTTTTGTGATGGATGTGGATGT
CGGGGAGGAGCTCGGCCACCTCCAGACACGCGTCTGCGGATGGTGCAAGG
GTTGGCGACGGGTTATTCTCGGGTCTGTTTTTTAACGTCGGGAAATCGCC
CAAGAGACGGGAGCGCTTTCGGAGACGATGCGGGGTGCTCTCGCTGTTTC
GTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGT
GTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGT
GTGTGTGTGCGCGCGTATGTGTGTGCGTGTATCTGTGTGTGTGCGTGTGT
GCGTGTGGGTGTTTGTTTCTTCTGATCTAAGGGAGCGGACACAGCGCAAA
CCGTTGGTCTCGAGGTGTTACATTTCGGATGTGTTTAGGTGAGTTTCGGC
CCTGTCGTTTGCCGGTGCAACCTTGCAGAGTCCTCCCGGCGTGAAAGTCA
ACACTCGTCCCTCGATGTCCTGCTTTGTTTCTTTCTTGCTTTCGGCTTGT
CCCAGACTGCCATGGTGCAGGAGTGCGCCAAGTCGGGCTGCCTGAAGAAG
AGCAACCTTTCCGGACTCGCCACCCTTGACAAGCCCCGCCTAGAAAAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10720:1101..4298-

>mRNA_H-canaliculatus_F_contig10720.690.1 ID=mRNA_H-canaliculatus_F_contig10720.690.1|Name=mRNA_H-canaliculatus_F_contig10720.690.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1302bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10720:1101..4298- (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGCCACGCCGCACGCGCATGCGGTGCCTCTCCTCTCCTGTCGGTTT
TAACCCCATCGCAGCGATGCAACACGGTGTCAGTCGGCATACCCGCCCGC
GTCTGTCTGTTCTCGTTGCTGGAGCCACCGACCTCGGCAACGGTGACCGT
GAACGCGCCGCCCTCGCCTCCCGCTTCGTCCGCGTCCGTGCCCGCCTCCG
GTACCACCCTCCGGCCTCACCCCACCGACCCCACCGCGCCGCCGCAGCAC
CCGCATCGAGCAGCTCAAGGTGTACAGGAGGAACGGCATCACGACCCTCG
CGGACGGGATCGAGTTCGACAAGGCCCGCCAGAGGCGCCAGGAAGAGATG
AGGCCACGCCGCACGCGCATGCGGTGCCTCTCCTCTCCTGTCGGTTTTAA
CCCCATCGCAGCGATGCAACACGGTGTCAGTCGGCATACCCGCCCGCGTC
TGTCTGTTCTCGTTGCTGGAGCCACCGACCTCGGCAACGGTGACCGTGAA
CGCGCCGCCCTCGCCTCCCGCTTCGTCCGCGTCCGTGCCCGCCTCCGGTA
CCACCCTCCGGCCTCACCCCACCGACCCCACCGCGCCGCCGCAGCACCCG
CATCGAGCAGCTCAAGGTGTACAGGAGGAACGGCATCACGACCCTCGCGG
ACGGGATCGAGTTCGACAAGGCCCGCCAGAGGCGCCAGGAAGAGCTGGCA
TCCCAGAAGCACCGCGAGTCCGCGTCCTACCTCTACGACGGCCACGCCAC
GGCGAAGGCCAGCACAGGAAACGACCGGAACAGGCGCTACAAGGACAGGA
ACAAGCTGGCATCCCAGAAGCACCGCGAGTCCGCGTCCTACCTCTACGAC
GGCCACGCCACGGCGAAGGCCAGCACAGGAAACGACCGGAACAGGCGCTA
CAAGGACAGGAACAAGGGCGGCGGGATGTCCGACGGGAACGGCGAAGACG
GGCGGGGGGGCAACCTCCTCGATGTCGACGGGGCCCCCGGGGTCGAGTAC
CTCTCGCCCAAGGAGCGCCTGCTGTGCTCGCAGCTCCACCTGCTGCCGGG
CTACTTCCTCTCCATCAAGGGCGGCGGGATGTCCGACGGGAACGGCGAAG
ACGGGCGGGGGGGCAACCTCCTCGATGTCGACGGGGCCCCCGGGGTCGAG
TACCTCTCGCCCAAGGAGCGCCTGCTGTGCTCGCAGCTCCACCTGCTGCC
GGGCTACTTCCTCTCCATCAAGACTGCCATGGTGCAGGAGTGCGCCAAGT
CGGGCTGCCTGAACTGCCATGGTGCAGGAGTGCGCCAAGTCGGGCTGCCT
GA
back to top