mRNA_H-canaliculatus_F_contig10703.678.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10703.678.1
Unique NamemRNA_H-canaliculatus_F_contig10703.678.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10703.678.1 vs. uniprot
Match: D7G0P8_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0P8_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 1.330e-101
Identity = 169/205 (82.44%), Postives = 179/205 (87.32%), Query Frame = 1
Query:    1 RVKLLKIGCALMLAGLIALTVAFMFDYVSEDDCNAYTTDETCTDYSDKCEWDTSCSCGSSTSXXXXXXXXXXXXXDCTCCDVTGLDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVANFGFNLLVTLIFPTMLDVIGSSWSFGIFAVIDVYSLYFIKTRVPETKGLSLEQIEAMFLRRGQRSTREALA 615
            RVKLL IGC LML  LIALT+AFMFDYVSE+DCN YTTD TC+ YSDKCEWDTSC+C S+  XXXXXXX       CTCC V GLDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVV NFGFNLLVT IFPTML+ +GSSW+F IFAV D YSLYFIKTRVPETKGLSLEQIEA+FLRRGQR+TR ALA
Sbjct:  325 RVKLLNIGCMLMLLALIALTIAFMFDYVSEEDCNDYTTDSTCSAYSDKCEWDTSCTCDSTXXXXXXXXXG------CTCCGVAGLDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVVNFGFNLLVTFIFPTMLEDLGSSWTFAIFAVADAYSLYFIKTRVPETKGLSLEQIEALFLRRGQRNTRAALA 523          
BLAST of mRNA_H-canaliculatus_F_contig10703.678.1 vs. uniprot
Match: A0A836CC74_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC74_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.070e-67
Identity = 115/194 (59.28%), Postives = 143/194 (73.71%), Query Frame = 1
Query:    1 RVKLLKIGCALMLAGLIALTVAFMFDYVSEDDCNAYTTDETCTDYSDKCEWDTSCSCGSSTSXXXXXXXXXXXXXDCTCCDVTGLDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVANFGFNLLVTLIFPTMLDVIGSSWSFGIFAVIDVYSLYFIKTRVPETKGLSLEQIEAMFLR 582
            R  LL +GC +ML  L+AL + F FDYVS ++CN YT   +C +++ KCE+ + C C  + S              CTCC V GLD QK  IL AMFVYIGGYQVGFGP+VWL+ISE+FPL++RGKAISVAVVANF  NLLVT +FP  +D+IG+SW+F IFAVID+Y+L+FI TRVPETKGL+LEQIE +F R
Sbjct:  321 RKTLLSVGCWMMLIALVALGITFFFDYVSSEECNEYTDATSCANFNSKCEFASDCVCDDTDSGSDA----------CTCCSVGGLDAQKIVILIAMFVYIGGYQVGFGPIVWLLISELFPLELRGKAISVAVVANFTSNLLVTFLFPVEMDLIGTSWTFLIFAVIDLYALWFIYTRVPETKGLTLEQIEHLFQR 504          
BLAST of mRNA_H-canaliculatus_F_contig10703.678.1 vs. uniprot
Match: A0A835ZBD5_9STRA (General substrate transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBD5_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.140e-61
Identity = 112/198 (56.57%), Postives = 139/198 (70.20%), Query Frame = 1
Query:    1 RVKLLKIGCALMLAGLIALTVAFMFDYVSEDDCNAYTTDET--CTDYSDKCEWDTSCSCGSSTSXXXXXXXXXXXXXDCTCCDVTGLDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVANFGFNLLVTLIFPTMLDVIGSSWSFGIFAVIDVYSLYFIKTRVPETKGLSLEQIEAMFLRRG 588
            R  LL++GC LMLA L+ L+ AF FDYVS +DC+  T + +  C  +SDKC +   C+C ++++             DC CC   G D QK  ILAAMF+YIGGYQ GFGP+ W +ISEIFPL++RGKAISVAVVANF  NLLVT  FP  +D+IG S +F IFA +D+Y+LYFI TRVPETKGLSLE IEA+F R G
Sbjct:  326 RKTLLRLGCWLMLAALLMLSAAFAFDYVSSEDCSQNTDEASASCAAFSDKCAFIPGCTCDTASAAAD----------DCACCTGAGFDAQKGFILAAMFLYIGGYQAGFGPITWCLISEIFPLELRGKAISVAVVANFASNLLVTFFFPLEMDLIGVSATFLIFAALDIYALYFIATRVPETKGLSLEAIEALFQRIG 513          
BLAST of mRNA_H-canaliculatus_F_contig10703.678.1 vs. uniprot
Match: A0A7S0SS38_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SS38_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.180e-41
Identity = 72/139 (51.80%), Postives = 99/139 (71.22%), Query Frame = 1
Query:  145 CEWDTSCS--CGSSTSXXXXXXXXXXXXXDCTCCDVTGLDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVANFGFNLLVTLIFPTMLDVIGSSWSFGIFAVIDVYSLYFIKTRVPETKGLSL 555
            C WD  C+  C + T               CTCC ++G++ QK+ IL A+F+YIGGYQ+GFGP+ WL+ISEIFPL+VRGKA+S+AVV NF +N ++T IFP  L++IG S +F I+A+I ++S+ FI  RVPETKGL+L
Sbjct:    8 CVWDAGCASECSAETDDYL-----------CTCCGISGINFQKSVILTALFIYIGGYQIGFGPISWLLISEIFPLEVRGKAVSIAVVTNFFWNTIMTFIFPIELNLIGQSLTFFIYAIILIFSINFIYHRVPETKGLTL 135          
BLAST of mRNA_H-canaliculatus_F_contig10703.678.1 vs. uniprot
Match: A0A7S2UXZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXZ9_9STRA)

HSP 1 Score: 152 bits (384), Expect = 3.650e-40
Identity = 85/173 (49.13%), Postives = 107/173 (61.85%), Query Frame = 1
Query:    1 RVKLLKIGCALMLAGLIALTVAFMFDYVSEDDCNAYTTDETCTDYSDKCEWDTSCSCGSSTSXXXXXXXXXXXXXDCTCCDVTGLDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVANFGFNLLVTLIFPTMLDVIGSSWSFGIFAVIDVYSLYFI 519
            R KLL IGC +ML  L+ L V F F Y S D C A T  ++C D S  CEW                            C VTGLD QK  IL AMF+YIGGYQVGFGP+ WLIISE+FPL++RGKAISVAVV+NF +  + + +FP  L++ G+S +F +FA+ID Y++YFI
Sbjct:  353 RKKLLYIGCVMMLVALLLLAVCFAFPYTSYDQCEAMTEADSCGDLSG-CEWSEDA------------------------CGVTGLDGQKVTILGAMFLYIGGYQVGFGPIAWLIISEVFPLELRGKAISVAVVSNFFWMTVESFLFPVQLELFGASVTFFVFALIDAYAIYFI 500          
BLAST of mRNA_H-canaliculatus_F_contig10703.678.1 vs. uniprot
Match: A0A7S3DPE6_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DPE6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.220e-33
Identity = 65/118 (55.08%), Postives = 89/118 (75.42%), Query Frame = 1
Query:  253 LDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVANFGFNLLVTLIFPTMLDVIGSSWSFGIFAVIDVYSLYFIKTRVPETKGLSLEQIEAMFLRRGQRSTRE 606
            ++  K  +L A+F+YIGGYQVGFGP+ WL+ SE+FPL +RG+A+++AV  NF FN  V    P +   +G SW+FGIFA++D+YSLYFI+T VPETKGLSLE+IE  F R  + S+R+
Sbjct:  398 VELPKGLVLGALFLYIGGYQVGFGPITWLMTSEVFPLAIRGQAVALAVQFNFLFNAAVQFGVPVLQQAVGLSWTFGIFALLDLYSLYFIRTFVPETKGLSLEEIEEKFGRMTRGSSRD 515          
BLAST of mRNA_H-canaliculatus_F_contig10703.678.1 vs. uniprot
Match: A0A7S2BYB2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYB2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.030e-33
Identity = 62/120 (51.67%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  241 DVTGLDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVANFGFNLLVTLIFPTMLDVIGSSWS--------FGIFAVIDVYSLYFIKTRVPETKGLSLEQIEAMF 576
            D   LD +   I+  MF YIGGYQ+GFGP+ WL+ISE+FPL+VRG+A++ AV  NF +NL+V+L++P ++D  G+++         FGIFAV+ +Y+L FI   VPETKGLSLE+IE  F
Sbjct:   70 DAVNLDWRTVTIIIGMFAYIGGYQLGFGPIAWLLISEVFPLEVRGQAVAFAVQNNFAWNLVVSLLYPVLIDSFGTAFGDEYKYCAGFGIFAVLTLYALVFIYRNVPETKGLSLEEIERKF 189          
BLAST of mRNA_H-canaliculatus_F_contig10703.678.1 vs. uniprot
Match: F0Y6Q9_AURAN (General sugar transporter n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6Q9_AURAN)

HSP 1 Score: 127 bits (320), Expect = 4.990e-31
Identity = 62/114 (54.39%), Postives = 86/114 (75.44%), Query Frame = 1
Query:  250 GLDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVANFGFNLLVTLIFPT----MLDVIGSSWS----FGIFAVIDVYSLYFIKTRVPETKGLSLEQIE 567
            G   QK  I+  +FVYI GYQVGFGP+ WL+ISE+FPL+VRG+A+++AV ANF  N+LV+ +FP     +  ++GS+W     FGIFAV+D+Y+L+FI   VPETKG++LE+IE
Sbjct:  361 GFSAQKGAIVGLIFVYIAGYQVGFGPIAWLLISEVFPLEVRGQAVALAVQANFASNMLVSFLFPVAQTGLKALLGSTWYLTVLFGIFAVLDLYALHFINRNVPETKGMTLEEIE 474          
BLAST of mRNA_H-canaliculatus_F_contig10703.678.1 vs. uniprot
Match: A0A7S2FR46_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FR46_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.280e-31
Identity = 62/120 (51.67%), Postives = 86/120 (71.67%), Query Frame = 1
Query:  241 DVTGLDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVANFGFNLLVTLIFPTMLDVIGSSWS--------FGIFAVIDVYSLYFIKTRVPETKGLSLEQIEAMF 576
            D   LD +   I+  MF YIGGYQ+GFGP+ WL+ISE+FPL+VRG+A++ AV  NF +NL+V+L++P ++D  G+++         FGIFAV+ +Y+L FI   VPETKGLSLE+IE  F
Sbjct:  373 DAVNLDWRTVTIIIGMFAYIGGYQLGFGPIAWLLISEVFPLEVRGQAVAFAVQNNFAWNLVVSLLYPVLIDSFGTAFGDEYKYCAGFGIFAVLTLYALVFIYRNVPETKGLSLEEIERKF 492          
BLAST of mRNA_H-canaliculatus_F_contig10703.678.1 vs. uniprot
Match: A0A7S1UI73_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI73_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.210e-29
Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = 1
Query:  250 GLDTQKACILAAMFVYIGGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVANFGFNLLVTLIFPTMLDVIGSSWSFGIFAVIDVYSLYFIKTRVPETKGLSLEQIEAMFLRRGQRS 597
            GL+ QK  IL  +  YIGGYQVGFGPV W +ISE+FPL+VRG+A+++AV  NF  NL+VT +F   LD IGS+ +F +FA I   S++F+   VPETKGL+LE+IE  F  +   S
Sbjct:  384 GLNAQKIVILTCLLAYIGGYQVGFGPVAWTLISEVFPLEVRGQAVALAVQVNFFLNLVVTFLFLIELDAIGSTLTFAVFAGILAGSVFFVYKYVPETKGLTLEEIETFFFEKNAHS 499          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10703.678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0P8_ECTSI1.330e-10182.44MFS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CC74_9STRA1.070e-6759.28Major facilitator superfamily domain-containing pr... [more]
A0A835ZBD5_9STRA2.140e-6156.57General substrate transporter n=1 Tax=Tribonema mi... [more]
A0A7S0SS38_9STRA3.180e-4151.80Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S2UXZ9_9STRA3.650e-4049.13Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3DPE6_9STRA1.220e-3355.08Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A7S2BYB2_9STRA3.030e-3351.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
F0Y6Q9_AURAN4.990e-3154.39General sugar transporter n=1 Tax=Aureococcus anop... [more]
A0A7S2FR46_9STRA6.280e-3151.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1UI73_9STRA1.210e-2953.45Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10703contigH-canaliculatus_F_contig10703:133..2606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.9
Seed ortholog evalue5.5e-83
Seed eggNOG ortholog2880.D7G0P8
Preferred nameVGT1
GOsGO:0000325,GO:0003674,GO:0005215,GO:0005351,GO:0005353,GO:0005355,GO:0005402,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006810,GO:0006811,GO:0006812,GO:0007275,GO:0008150,GO:0008324,GO:0008643,GO:0008645,GO:0009507,GO:0009526,GO:0009536,GO:0009605,GO:0009607,GO:0009624,GO:0009705,GO:0009791,GO:0009845,GO:0009909,GO:0009911,GO:0009941,GO:0015075,GO:0015077,GO:0015078,GO:0015144,GO:0015145,GO:0015149,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015749,GO:0015755,GO:0016020,GO:0022804,GO:0022857,GO:0022890,GO:0031090,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0034219,GO:0034220,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046323,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051119,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0055085,GO:0065007,GO:0071702,GO:0090351,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098805,GO:1902600,GO:1904659,GO:2000026,GO:2000241,GO:2000243
EggNOG free text desc.glucose import
EggNOG OGsKOG0254@1,KOG0254@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons5
Model size618
Cds size618
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10703.678.1prot_H-canaliculatus_F_contig10703.678.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10703 133..2606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928733.2752917-CDS-H-canaliculatus_F_contig10703:132..2841622928733.2752917-CDS-H-canaliculatus_F_contig10703:132..284Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10703 133..284 +
1696845543.2899656-CDS-H-canaliculatus_F_contig10703:132..2841696845543.2899656-CDS-H-canaliculatus_F_contig10703:132..284Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10703 133..284 +
1622928733.2877493-CDS-H-canaliculatus_F_contig10703:817..9771622928733.2877493-CDS-H-canaliculatus_F_contig10703:817..977Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10703 818..977 +
1696845543.3016467-CDS-H-canaliculatus_F_contig10703:817..9771696845543.3016467-CDS-H-canaliculatus_F_contig10703:817..977Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10703 818..977 +
1622928733.299169-CDS-H-canaliculatus_F_contig10703:1462..15211622928733.299169-CDS-H-canaliculatus_F_contig10703:1462..1521Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10703 1463..1521 +
1696845543.3104908-CDS-H-canaliculatus_F_contig10703:1462..15211696845543.3104908-CDS-H-canaliculatus_F_contig10703:1462..1521Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10703 1463..1521 +
1622928733.3170006-CDS-H-canaliculatus_F_contig10703:2206..23631622928733.3170006-CDS-H-canaliculatus_F_contig10703:2206..2363Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10703 2207..2363 +
1696845543.3204353-CDS-H-canaliculatus_F_contig10703:2206..23631696845543.3204353-CDS-H-canaliculatus_F_contig10703:2206..2363Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10703 2207..2363 +
1622928733.341946-CDS-H-canaliculatus_F_contig10703:2516..26061622928733.341946-CDS-H-canaliculatus_F_contig10703:2516..2606Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10703 2517..2606 +
1696845543.3288052-CDS-H-canaliculatus_F_contig10703:2516..26061696845543.3288052-CDS-H-canaliculatus_F_contig10703:2516..2606Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10703 2517..2606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10703.678.1

>prot_H-canaliculatus_F_contig10703.678.1 ID=prot_H-canaliculatus_F_contig10703.678.1|Name=mRNA_H-canaliculatus_F_contig10703.678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=206bp
RVKLLKIGCALMLAGLIALTVAFMFDYVSEDDCNAYTTDETCTDYSDKCE
WDTSCSCGSSTSSGSTSSSTTSSSSDCTCCDVTGLDTQKACILAAMFVYI
GGYQVGFGPVVWLIISEIFPLDVRGKAISVAVVANFGFNLLVTLIFPTML
DVIGSSWSFGIFAVIDVYSLYFIKTRVPETKGLSLEQIEAMFLRRGQRST
REALA*
back to top

mRNA from alignment at H-canaliculatus_F_contig10703:133..2606+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10703.678.1 ID=mRNA_H-canaliculatus_F_contig10703.678.1|Name=mRNA_H-canaliculatus_F_contig10703.678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2474bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10703:133..2606+ (Hapterophycus canaliculatus Oshoro5f female)
AGGGTGAAGCTGCTGAAGATCGGGTGCGCGCTGATGCTCGCCGGCCTGAT CGCGTTGACGGTGGCCTTCATGTTCGACTACGTTAGCGAGGACGACTGCA ACGCGTACACGACCGACGAGACTTGCACCGACTACTCGGACAAGTGTGAA TGGTGAGAAGTGGAAACCGCGATCCGGCTGCTGCTGCTACTACTGCTCTT GTCGTCGACATCGAACGATGATGATGTTGGTGTCCATGGTGCAATGCCGA TGTCACTAGCACGTGTCGTCATCGCTGACGTGAACGCAATTCCAGGCGAG AGAAAGCGATCCCGGTCACTGCAAACAGAAACAAGGGACCGACAGACCCA AAATCCTATGACGCCAAAACGAAAAAATAGGACTCTGGCGGAAGAGAGCT CCGAATTCATGTGTCCTCGAATACCGTCCGTCGAATCCTTTCGAGTGTGT CGATCGGTCCTAGAAACGTCTCACCGGAACTCCAATAGTTCGTGGTGCCC CCCGCCCCCTTAAATCTAGACCGTTTTTCGAGTTTTTCTCAAATCTACGA ATAGGGCGGTGACCGCACCAGGGAACCCGGCAAACCAGTCTCGCATGCTC CACTTGCACCAGATCGAAACGCCTCGTTTGATCTTCCTTCTTCGACGTGT AATCCCCCCATCCAACGCTTCCTCTCCTCCCGCAGGGACACGAGTTGCTC GTGCGGCAGCAGCACCTCGAGCGGCTCGACGTCTTCGTCCACGACCTCGT CATCGAGCGACTGCACCTGCTGCGACGTGACTGGTCTGGACACGCAGAAG GCTTGCATCCTCGCCGCCATGTTCGTCTACATCGGCGGGTACCAGGTGCG TTCGTACTTCGTCGTCGTCGCCGCCGTCGCCGCTTTGAGTTTTTCTTTCC AGCTCTGCCGGCGTCTTTTGCAGTAGCTGCTGCTGCCGCCGCTCCTGCTG CTGCTGCTGCTGCTGTTTTTGTCTTCGTGTGCAACCGCCAAGTCGCCAGG TCCAGCGCAACTTACGTACCAACGGGACGCCGCCCGAGGTGTTCGGGCTT CCGTCCCCCTTTTCGACACGCATGGTTTCTCTCTTCCTTCGAATTGCTGC TGTTTGCAGGGGGGAGGGAGGGGGGGGGAGTGTGGTTGAGGTCCACACTT GTCGCCGCTGTTTTGGTGTCGCGTTCAGCTTTGTCGCGAACTGCCTCGTG TTCGTGTTCGCCGGGCCGTATCGCACGCTTTTCTTGCCCTCTGCCATCGC GTTCGTCTATGAACGCCCCAAACAGTGTCCCTGTTCGATCCGGATTGCCG CGGTTTCTCGGCGCCTTCCCCCCGTCGCAGGTCGGGTTCGGACCGGTGGT GTGGCTCATCATCTCCGAGATCTTCCCCTTGGACGTCAGGTGAGCAGCAG CGCAAGGGCACAGCGGGTGGACGGGGGCTCTCTTGAGCCAGAGGCGGAGC GCCTCGAGCATTCATTCTCATTCTCGACGGCTGTCGCCTGCCTGGATCCC CCGCTTGTTTTCCCCTCGAGGGATTCATGCACCATCCAGGGTGGAAAGGT CCTTCAGGCGTCTCACTTCCGACCAGGGGGAGGGGAGCTCCTTTCCGCCT GTGATAGCTGAAGCAGTGGCAACGCCAGCAGCAGCAACAGGAGAAGCAGT AGCGGTGGTGGCGGCAGCGGTGTCAGTATCACCAAGCACGCCTGAGCGAC CAACACAACAAGACGAACAAGAGGAATGGCGTCGTCGACCGCAGCAGGCA GGATCACGATGACATGAAGTGAAGAAGAGGGGGCCCAGCAGAGTGAACCA CGGCCTTTTCGGGGATTGGTCCACACGAACACGAACGGTGTTGCTGTTTC CCGTTGGAATTCTCTGCATTCGGGGGAGTGATGCTACGGCCGATACGGGG GAAGTTTTTCACCGTGACCAATTCTGTGCCACCCCGCCTGCCTGCTTCTC AACGATCTATTTGTCGGAATCGACAACTAGATTCCGGCCTCCTCCCACCC CTTGATTTTCGACACCGCACCACTCTGCGCCCTCCTCCGCCACATTGTCT GCTGCCCATCGTGCGACGCATCAGGGGTAAGGCCATCTCCGTGGCGGTGG TGGCGAACTTCGGCTTCAACCTCCTGGTGACGCTGATCTTCCCGACGATG CTCGACGTGATCGGCTCCTCCTGGAGCTTCGGCATCTTCGCTGTCATAGA CGTGTACTCGCTGTACTTCATCAAAACCAGGGTAAGATTTCCGTACACTC CAAATCGACCGTCGATCAAGCGAAACCCCTTCCGCATGCTTTCCCCACCC GCGACCGTCCCTCCCGAGACATCGCTTTGATTCTCCTTGCTGAAAACATC GCTTCCCTGCGAACCGTTCCGGGCGACTGTGCAGGTTCCCGAGACCAAGG GGCTCTCCCTGGAGCAGATCGAAGCCATGTTCCTCAGGAGAGGGCAGCGG AGCACGAGGGAGGCGCTCGCATGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10703:133..2606+

>mRNA_H-canaliculatus_F_contig10703.678.1 ID=mRNA_H-canaliculatus_F_contig10703.678.1|Name=mRNA_H-canaliculatus_F_contig10703.678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10703:133..2606+ (Hapterophycus canaliculatus Oshoro5f female)
AGGGTGAAGCTGCTGAAGATCGGGTGCGCGCTGATGCTCGCCGGCCTGAT
CGCGTTGACGGTGGCCTTCATGTTCGACTACGTTAGCGAGGACGACTGCA
ACGCGTACACGACCGACGAGACTTGCACCGACTACTCGGACAAGTGTGAA
TGAGGGTGAAGCTGCTGAAGATCGGGTGCGCGCTGATGCTCGCCGGCCTG
ATCGCGTTGACGGTGGCCTTCATGTTCGACTACGTTAGCGAGGACGACTG
CAACGCGTACACGACCGACGAGACTTGCACCGACTACTCGGACAAGTGTG
AATGGGACACGAGTTGCTCGTGCGGCAGCAGCACCTCGAGCGGCTCGACG
TCTTCGTCCACGACCTCGTCATCGAGCGACTGCACCTGCTGCGACGTGAC
TGGTCTGGACACGCAGAAGGCTTGCATCCTCGCCGCCATGTTCGTCTACA
TCGGCGGGTACCAGGGACACGAGTTGCTCGTGCGGCAGCAGCACCTCGAG
CGGCTCGACGTCTTCGTCCACGACCTCGTCATCGAGCGACTGCACCTGCT
GCGACGTGACTGGTCTGGACACGCAGAAGGCTTGCATCCTCGCCGCCATG
TTCGTCTACATCGGCGGGTACCAGGTCGGGTTCGGACCGGTGGTGTGGCT
CATCATCTCCGAGATCTTCCCCTTGGACGTCAGGTCGGGTTCGGACCGGT
GGTGTGGCTCATCATCTCCGAGATCTTCCCCTTGGACGTCAGGGGTAAGG
CCATCTCCGTGGCGGTGGTGGCGAACTTCGGCTTCAACCTCCTGGTGACG
CTGATCTTCCCGACGATGCTCGACGTGATCGGCTCCTCCTGGAGCTTCGG
CATCTTCGCTGTCATAGACGTGTACTCGCTGTACTTCATCAAAACCAGGG
GGTAAGGCCATCTCCGTGGCGGTGGTGGCGAACTTCGGCTTCAACCTCCT
GGTGACGCTGATCTTCCCGACGATGCTCGACGTGATCGGCTCCTCCTGGA
GCTTCGGCATCTTCGCTGTCATAGACGTGTACTCGCTGTACTTCATCAAA
ACCAGGGTTCCCGAGACCAAGGGGCTCTCCCTGGAGCAGATCGAAGCCAT
GTTCCTCAGGAGAGGGCAGCGGAGCACGAGGGAGGCGCTCGCATGAGTTC
CCGAGACCAAGGGGCTCTCCCTGGAGCAGATCGAAGCCATGTTCCTCAGG
AGAGGGCAGCGGAGCACGAGGGAGGCGCTCGCATGA
back to top