mRNA_H-canaliculatus_F_contig10627.610.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10627.610.1 vs. uniprot
Match: A0A6H5K9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B3_9PHAE) HSP 1 Score: 147 bits (372), Expect = 3.720e-33 Identity = 288/745 (38.66%), Postives = 323/745 (43.36%), Query Frame = 1 Query: 82 VLEWLRRNRPEGWTLRGGAQAAARNGELAALSYLLLGGKGNAVQDFDDGGGG-----------------FGALDARLSGHGMRXXXXXXXXXXXXDGSRGCGAGCSPV-----------------------SDPIDGLRLAGGGGIAPAWRVTLDLDEAAAEGRLAVLEWARRATIRGDVVEISYCSSPSCCDS----------SSSTPLP------RSAGEGNGPRA----------------VPGVEPSEACSFKSSHEFCSFLCCGCGCXXXCGGGR-RENGPSGEGKCGEEKRGRDKNLPLDRCFARDDG---------GDEKKEEEDRDGRKEDVADSLRTSDAPGRDYGYGDAEKKADTEKEQAEPDERGGEKEEEAKECAHCPPRCXXXXRCGRRSGTGAAGRRLRRGNERDDSVLLPSATSPAPSTRAAATXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------CCKRARRAAEDDSTGATDGNGWRGRRRVCHSRERE-RAVRGGGVS-EGVFRGEGPRRGGAHGRVASGAGTNRFRVAFTTAAVDGAAAKGHLEVIRWLYHHRREGGTXXXXXXXXXXXXXXXXXXXTRNMPPGPSDENEAPREK-RSILYPSXXXXXXXXXXXXXXXXFHRRDALKGYMYTAAAADDFTYRLMXXXXXXXXXXXXXXLCEHRREGCSWNAFDGAAXXXXTHVLDWLRGSYHGVGPSAVAF 1962
LEWLRRNR EGWTL GGAQ AAR G+LAALSYLLLG + ++ FDDG G GA A G G+ DG GA +D IDGL LAGG G+A VTLDLDEAAAEGRLAVL+WARRAT+ G SP C + S PLP R AG GN R+ P P C + CC CG G + GP G+ E+ NLP C G+E+K +ED G E AE+K D+ P XXXX + R SV L +T+ TRA XXXXXXXXXXXXXXXXXXXXXXX CC+ RA S D +GWRGR+ C S R GGGV+ E R E GGA G +A GAG NRFRV +T AVD AA GHLEV+RWLY HR EGGT XXXXXXXXXXXX RN P + + S+L PS XXXXXXXXXXXX A G + D FTYRLMXXXXXXXXXXXXXXL +HR EGCSWN XXXX YH VGPSAVAF
Sbjct: 659 TLEWLRRNRAEGWTLGGGAQRAARCGQLAALSYLLLGDRDSSAAVFDDGFGAPXXXXXLLSPLEAALFAAGAAGAETGGAGV----VDAHVHGGDDGDDMAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVIDGLLLAGGEGVAAV--VTLDLDEAAAEGRLAVLQWARRATMDG-------APSPPSCGARHRFSLDTRLSKMPPLPPPPRLLRPAGLGNLSRSSAQXXXXXXXXXXXXXFPRDAPGGGC----------YCCCDCGEEGRIGSAEEKRRGPEYSGEAEEDF---SYNLPFLPCGGXXXXXXXXXXXPWGEEEKTQEDAGGYGEXXXXXXXXXXXX-----XXGAEEKRDS------------------------FPXXXXXXXXXXXXXXXXXXXXXXXVHGRSGSVTLAYSTAAMERTRAVVASXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSVPFRSPGGNDAAAAATAGRCDHCRCCCCEVDTRATPSSSV---DDSGWRGRQHRCPSSTRRFYGDHGGGVAAEHRRRPEARGAGGAAG-LAVGAGRNRFRVTMSTDAVDRAAGNGHLEVVRWLYLHRAEGGTAGAITAXXXXXXXXXXXXLARNTPLMATTTGRVSFFRGTSVLNPSALDRXXXXXXXXXXXXXXXXYANNG---RRSGEDGFTYRLMXXXXXXXXXXXXXXLRQHRSEGCSWNXXXXXXXXXXXXXXXXXXXXYHAVGPSAVAF 1341
BLAST of mRNA_H-canaliculatus_F_contig10627.610.1 vs. uniprot
Match: D7FZJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ2_ECTSI) HSP 1 Score: 100 bits (250), Expect = 2.210e-18 Identity = 208/571 (36.43%), Postives = 233/571 (40.81%), Query Frame = 1 Query: 316 DGSRGCGAGCSPVSDPIDGLRLAGGGGIAPAWRVTLDLDEAAAEGRLAVLEWARRATIRGDVVEISYCSSP---SCCDSSSSTPLP--------RSAGEGNGPRAVPGVEPSEACSFKSSHEFCSFLCCGCGCXXX-CGGGRR----ENGPSGEGKCGEEKRGRDKNLPLDRCFARDDGGDEKKEEEDRDGRKEDVADSLRTSDAPGRDYGYGDAEKKADTEKEQAEPDERGGEKEEEAKECAHCPPRCXXXXRCGRRSGTGAAGRRLRRGNERDDSVLLPSATSPAPSTRAAATXXXXXXXXXXXXXXXXXXXXXXXXCCKRARRAAEDDSTGATDGNGWRGRRRVCHSRERERAVRGGGVSEGVFRGEGPRR------GGAHGRVASGAGTNRFRVAFTTAAVDGAAAKGHLEVIRWLYHHRREGGTXXXXXXXXXXXXXXXXXXXTRNMPPGPSDENEAPREK-RSILYPSXXXXXXXXXXXXXXXXFHRRDALKGYMYTAAAADDFTYRLMXXXXXXXXXXXXXXLCEHRREGCSWNAFDGAAXXXXTHVLDWLRGSYHGVGPSAVA 1959
D G GA D IDGL LAGGGG+ A VTLDLDEAAAEGRLAVL+WARRAT+ G C + S S P R AG G R+ XXX CGG R E SG G GEE++ LPL C GG K ED DG +G+ ++ P+E GG +C +D D NGWRGR+ C S R GGV+ PRR G A G +A GAG NRFRVA +T AVD AA GHLEV+RWLY HR EGGT XXXXXXXXXXXX RN P ++ A + S+L PS XXXXXXXXXXXXX + D FTYRLMXXXXXXXXXXXXXXL +HR EGCSWNA XXXX YH VGPSAVA
Sbjct: 276 DDMAGAGAXXXXXXDAIDGLLLAGGGGVTAA--VTLDLDEAAAEGRLAVLQWARRATMDGAPSPPPSCGARHRLSLDTRLSKMPXXXXXXXXXLRPAGHGKISRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDCGGEGRIRSAEEKTSGSGDAGEEEKDAVYYLPLLPC-----GGGGKGCGEDEDGP-------------------WGEEDRT---------PEEAGG----------YC------------------------------------------------------------------------------------EDEKERWDDNGWRGRQHRCPSLTRRFNGDRGGVAASAH----PRRPESRGAGDAEG-LAVGAGRNRFRVAMSTDAVDRAAGNGHLEVVRWLYLHRAEGGTAGAITAXXXXXXXXXXXXLARNTPLMVTNTRRANFFRGTSVLNPSALDXXXXXXXXXXXXXXXXXXPKNR---RRSGEDGFTYRLMXXXXXXXXXXXXXXLRQHRSEGCSWNAXXXXXXXXXXXXXXXXDRHYHAVGPSAVA 709
BLAST of mRNA_H-canaliculatus_F_contig10627.610.1 vs. uniprot
Match: A0A3R6YAI4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YAI4_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 2.170e-5 Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 1 VKWLHANRNEGCSSLAMDGAAEHGRLEVLEWLRRNRP-EGWTLRGGAQAAARNGELAALSYL 183
+++LHANR+EGC+ LA+ A EHG LEV WL +R EG+T +AA N +A + +L
Sbjct: 24 LRFLHANRSEGCTELAIALACEHGHLEVARWLNEHRSWEGFTEYAFDKAAGNN-HMAVVEFL 84 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10627.610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10627.610.1 >prot_H-canaliculatus_F_contig10627.610.1 ID=prot_H-canaliculatus_F_contig10627.610.1|Name=mRNA_H-canaliculatus_F_contig10627.610.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=656bp VKWLHANRNEGCSSLAMDGAAEHGRLEVLEWLRRNRPEGWTLRGGAQAAAback to top mRNA from alignment at H-canaliculatus_F_contig10627:404..4172+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10627.610.1 ID=mRNA_H-canaliculatus_F_contig10627.610.1|Name=mRNA_H-canaliculatus_F_contig10627.610.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3769bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10627:404..4172+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10627:404..4172+ >mRNA_H-canaliculatus_F_contig10627.610.1 ID=mRNA_H-canaliculatus_F_contig10627.610.1|Name=mRNA_H-canaliculatus_F_contig10627.610.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3936bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10627:404..4172+ (Hapterophycus canaliculatus Oshoro5f female)back to top |