mRNA_H-canaliculatus_F_contig10626.609.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: D7G7N1_ECTSI (RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N1_ECTSI) HSP 1 Score: 443 bits (1140), Expect = 4.610e-149 Identity = 227/278 (81.65%), Postives = 252/278 (90.65%), Query Frame = 1 Query: 1 VQAQEKEEKKTGRRPPIREVARRSAGLSEAELVVVMQDGMEARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQER 834 ++AQEK EK +GRRP +R+VAR SAGLSE VMQ GMEARQKLVVCNLALVVSL+NKYKRSHFDC CLQTLIQEGTIGLIRAAERY P KGFRFTTYAIWWIEARLRVSVQTEER IHVPMWVKNQYNTV RS+PKLR+SLGREPTS+ELAAQVEIDT+S+VVV+ KRVE+L+TWVSFHRKHESLDVPL++STP+P D +TIE GVKA +PSTESTSELEIQRDFLE CL DLS+IQR ILRMKVGLGG+KGKNRQEISRA K+PFN ++S+ER Sbjct: 439 IEAQEKAEKDSGRRPRLRDVAR-SAGLSEEAFASVMQAGMEARQKLVVCNLALVVSLANKYKRSHFDCGCLQTLIQEGTIGLIRAAERYDPSKGFRFTTYAIWWIEARLRVSVQTEERFIHVPMWVKNQYNTVHRSVPKLRKSLGREPTSEELAAQVEIDTNSKVVVTPKRVEELETWVSFHRKHESLDVPLEVSTPVPADCSTIEDGVKAPDPSTESTSELEIQRDFLESCLCQDLSKIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEER 715
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A835Z811_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z811_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.490e-37 Identity = 98/271 (36.16%), Postives = 149/271 (54.98%), Query Frame = 1 Query: 34 GRRPPIREVARRSAGLSEAELVVVMQDGMEARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRV--EQLQTWVSF--HRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQER 834 GR P + E A + SEA ++ G+ A++ +V CNL LVV+L+ K++ L LIQEG +GL+RAAE+Y P +GFRF+TYA WW+ RL +SV++ R++ VP+ V +Q+ + R++ L LGR PT ELAA+ + + V A + E L + F HR + L L + TP D G A + E E ++ R+ LER + LS+ +R I+RM+VGL + K E++ ++P IL +ER Sbjct: 85 GREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQG---PPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLVTMLDV-TPAAAD-----DGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREER 345
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: Q8S9C9_CYAPA (RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa TaxID=2762 RepID=Q8S9C9_CYAPA) HSP 1 Score: 122 bits (306), Expect = 1.810e-28 Identity = 93/256 (36.33%), Postives = 133/256 (51.95%), Query Frame = 1 Query: 28 KTGRRPPIREVARRSAGLSEAE-LVVVMQDGMEARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSS--RVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEI 786 KTG P E AR +A LS+AE L +++ G AR +LV NL VV+++ KY + S +Q LIQEG IGLIRA E++ P G+RFTTYA WWI + S+Q R I +P + N + R+ L SLGR+PT E+A V +D S + V SA V + SLDVP+ S TI +++ +E E+ R+ + R L+ LS + +LRM+ GL + K ++ Sbjct: 155 KTGVEPTDEEWAR-AAALSDAEELRHMVRVGTLARDRLVRANLRWVVAVAKKYHKQRGTMS-MQDLIQEGNIGLIRAVEKFDPRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTEAEIAEHVGLDPSRMRKFVESAAAVATV-----------SLDVPINESDN---QSATIGDFIRSENEGPADRAERELMRESVARTLAKALSEREYMVLRMRFGLDDGEPKTLNQV 394
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A538DHD2_9ACTN (RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DHD2_9ACTN) HSP 1 Score: 117 bits (293), Expect = 4.710e-27 Identity = 82/243 (33.74%), Postives = 129/243 (53.09%), Query Frame = 1 Query: 124 ARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPD-------FTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQE 831 A+Q +V NL LVVS++ +Y+ LIQEGTIGL+RAAE++ KGF+F+TYA WWI + ++ + R I +P+ V + N ++RS KLR LGREPT+ E+ ++++ SA+ VEQ++ S +P+ + P+ D F T E P E ++E ++RD L++ L LS ++ IL M+ GL G++ + E+ RA + I E Sbjct: 126 AKQSMVEANLRLVVSIAKRYRNQGLP---FLDLIQEGTIGLVRAAEKFDYRKGFKFSTYATWWIRQAVARALADKSRTIRMPVHVVEKLNKIVRSERKLRGELGREPTAVEIGRELDL--------SAEEVEQIR---------RSSQLPVSLEKPVGDDEESEFGHFLTDETA-----PLPEESAEQALRRDALKQILC-SLSPREQRILEMRYGLDGEQPRTLDEVGRAFNVTRERIRQIE 342
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A538GPW4_9ACTN (RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538GPW4_9ACTN) HSP 1 Score: 117 bits (292), Expect = 6.340e-27 Identity = 87/253 (34.39%), Postives = 130/253 (51.38%), Query Frame = 1 Query: 85 EAELVVVMQDGME-ARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQG---VKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQE 831 E EL ++ G A+Q++V NL LVVS++ +Y+ LIQEGTIGL+RAAE++ KGF+F+TYA WWI + ++ + R I +P+ + + N ++RS KLR LGREPTS E+ VE+ S VEQ++ S P+ + P+ D E G SEP E +E+E+++ L R L LS +R +L ++ GL G+ E+ RA + I E Sbjct: 110 EVELAKRIERGEHRAKQEMVEANLRLVVSIAKRYRNQGLP---FLDLIQEGTIGLVRAAEKFDHRKGFKFSTYATWWIRQAVARALADKGRTIRMPVHIVEKLNKIVRSERKLRAELGREPTSMEIGRDVEL--------SPDEVEQIR---------RSSQAPVSLEKPVG-DEEESEFGHFLTDESEPLPEEAAEVELRKATLMRVLG-TLSLRERRVLELRYGLNGEHPCTLDEVGRAFNVTRERIRQIE 340
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A538F488_9ACTN (RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538F488_9ACTN) HSP 1 Score: 116 bits (290), Expect = 1.870e-26 Identity = 85/253 (33.60%), Postives = 132/253 (52.17%), Query Frame = 1 Query: 85 EAELVVVMQDGM-EARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQG---VKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQE 831 E EL ++ G +A+Q++V NL LVVS++ +Y+ LIQEGTIGL+RAAE++ KGF+F+TYA WWI + ++ + R I +P+ + + N ++RS KLR LGREPT+ E+ VE+ + VEQ++ S P+ + P+ D E G SEP E +E+E+++ L+R L LS +R +L ++ GL G+ E+ RA + I E Sbjct: 138 EVELAKRIERGEHKAKQEMVEANLRLVVSIAKRYRNQGLP---FLDLIQEGTIGLVRAAEKFDHRKGFKFSTYATWWIRQAVARALADKARTIRMPVHIVEKLNKIVRSERKLRAELGREPTAFEIGLDVELGSDE--------VEQIR---------RSSQAPVSLEKPVG-DEEESEFGHFLTDESEPLPEEAAEVEMRKATLQRVLG-TLSLRERRVLELRYGLNGEHPCTLDEVGRAFNVTRERIRQIE 368
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A7W0PH05_9ACTN (RNA polymerase sigma factor n=3 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0PH05_9ACTN) HSP 1 Score: 115 bits (287), Expect = 2.140e-26 Identity = 82/239 (34.31%), Postives = 126/239 (52.72%), Query Frame = 1 Query: 124 ARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPST---ESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQE 831 A+Q +V NL LVVS++ +Y+ LIQEGTIGL+RAAE++ KGF+F+TYA WWI + ++ + R I +P+ V + N ++RS KLR GREPT +E+A VE+ + VEQ++ S P+ + P+ D + E G ++ ST E +E +QR+ L R + LS +R +L ++ GL GQ+ + E+ RA + I E Sbjct: 98 AKQAMVEANLRLVVSIAKRYRNQGLP---FLDLIQEGTIGLVRAAEKFDHRKGFKFSTYATWWIRQAVARAIADKGRTIRMPVHVVEKLNRILRSERKLRSERGREPTMEEVARDVEMTPAE--------VEQIR---------RSAQTPVSLEKPVGDDDES-EFGHFLADDSTPLPEELAETALQREAL-RTILGALSERERRVLELRYGLDGQQPRTLDEVGRAFNVTRERIRQIE 314
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: K9XMI4_STAC7 (RNA polymerase, sigma 70 subunit, RpoD subfamily n=3 Tax=Pleurocapsales TaxID=52604 RepID=K9XMI4_STAC7) HSP 1 Score: 114 bits (286), Expect = 2.630e-26 Identity = 88/274 (32.12%), Postives = 151/274 (55.11%), Query Frame = 1 Query: 13 EKEEKKTGRRPPIREVARRSAGLSEAELVVVMQDGMEARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQER 834 EK E K G+ ++E A + LSEAEL ++ G A++K++ NL LVV+++ KY++ + + LIQEG++GL R E+Y P KG++F+TYA WWI + ++ + R I +P+ + + N + ++ +L + LGR T E+A ++E+DT+ Q++ +++ R+ SLDV + + ++G P +T EL +++D L L DL+ QR ++ ++ GL + GK E+S A KI LS+ER Sbjct: 56 EKLEHKLGKELSLKEWANQ-VNLSEAELDRAIKQGQRAKRKMIEANLRLVVAIAKKYQKRNME---FLDLIQEGSLGLERGVEKYDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAQELELDTA-----------QIREYLNVARQPISLDVRVGDNQDTELSELLEDEGTS---PDNYATQEL-LRQDLLH--LMADLTPQQREVIALRFGL--EDGK---ELSLA-KIGQRMNLSRER 302
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A7S2XSD2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSD2_9STRA) HSP 1 Score: 114 bits (286), Expect = 3.130e-26 Identity = 78/234 (33.33%), Postives = 121/234 (51.71%), Query Frame = 1 Query: 82 SEAELVVVMQDGMEARQKLVVCNLALVVSLSNKY----KRSHFD------CSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGL 753 S EL VM DG EAR KLV CN LV ++ ++ KRS+ D +Q LIQEG +GL+ AAER+ P KGFRF+TYA WW+ R+ S+ R+I +P+ V + ++ ++ + +GR+P+ ELA V I +++LQ + R SL+VP+ T T+ + + P+ E +EL+ R + R + +L +R +L + GL Sbjct: 35 SVMELRQVMHDGREARSKLVACNAGLVTQIAKRHYWTLKRSNQDGRGVGTILTMQDLIQEGNLGLMEAAERFDPSKGFRFSTYATWWVRQRVLRSIADYSRVIRLPVHVHTMLKNISKARKEMTKQIGRDPSMPELAHHVGIS-----------IDKLQLYTDSSRSVLSLEVPIA-GTDKVDQKRTLGDKIASKNPTPEEDAELDSLRTDI-RAVVDELGDRERDVLVTRFGL 255
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: UPI0016891690 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI0016891690) HSP 1 Score: 114 bits (284), Expect = 4.330e-26 Identity = 72/194 (37.11%), Postives = 109/194 (56.19%), Query Frame = 1 Query: 34 GRRPPIREVARRSAGLSEAELVVVMQDGMEARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSS-RVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTT 612 GR P ++E A R A LS AEL V+ +G A++K+V NL LVVS++ KY + + D L LIQEGTIG+ R E++ P KG+RF+TYA WWI + ++ + R I +P+ + + N + ++ +L + LGR T+ ELA ++E+ T R + RV + L L+ + P P DF T Sbjct: 54 GREPELQEWAER-ANLSVAELQQVIDEGEFAKRKMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQKLGRAATASELAEELELTTKQVREYLERARVPLSLDLKVGDNQDTELGELLEDTNPSPEDFAT 243 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10626.609.1 >prot_H-canaliculatus_F_contig10626.609.1 ID=prot_H-canaliculatus_F_contig10626.609.1|Name=mRNA_H-canaliculatus_F_contig10626.609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=278bp VQAQEKEEKKTGRRPPIREVARRSAGLSEAELVVVMQDGMEARQKLVVCNback to top mRNA from alignment at H-canaliculatus_F_contig10626:2..4300- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10626.609.1 ID=mRNA_H-canaliculatus_F_contig10626.609.1|Name=mRNA_H-canaliculatus_F_contig10626.609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4299bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10626:2..4300- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10626:2..4300- >mRNA_H-canaliculatus_F_contig10626.609.1 ID=mRNA_H-canaliculatus_F_contig10626.609.1|Name=mRNA_H-canaliculatus_F_contig10626.609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1668bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10626:2..4300- (Hapterophycus canaliculatus Oshoro5f female)back to top |