mRNA_H-canaliculatus_F_contig10622.606.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: A0A6H5J936_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J936_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 9.580e-8 Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 Query: 196 GMASASGE------RRASCDFCSRRKRKCDGVNPCQNCRKLKLVCHFSVKQKSG 339
G ASGE RR++CD CS +K KCDG+ PCQ CRK + CHFSVK+ +G
Sbjct: 73 GATGASGEDGEGTRRRSACDSCSLKKIKCDGLKPCQACRKRGVTCHFSVKRPTG 126
BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: D7FM09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM09_ECTSI) HSP 1 Score: 57.4 bits (137), Expect = 6.110e-7 Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1 Query: 295 KLKLVCHFSVKQKSGRKRKPREGENPPLEAPTPPP 399
KLKLVCHFSVKQKSGRKRKPREGE P L+ P+ PP
Sbjct: 2 KLKLVCHFSVKQKSGRKRKPREGEAPTLDTPSRPP 36
BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: A0A6H5JV62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV62_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 3.930e-6 Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 1 Query: 298 LKLVCHFSVKQKSGRKRKPREGENPPLEAPTPPP 399
LKLVCHFSVKQKSGRKRKPREGE P L P+ PP
Sbjct: 2 LKLVCHFSVKQKSGRKRKPREGEAPTLHTPSRPP 35
BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: A0A177VSR3_9BASI (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VSR3_9BASI) HSP 1 Score: 54.3 bits (129), Expect = 7.300e-6 Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 Query: 220 RRASCDFCSRRKRKCDGVNPCQNCRKLKLVCHFSVKQKSGRKRK 351
RRASC+FC RRK +CDG +PC C + K+VC F V+ GR R+
Sbjct: 31 RRASCEFCRRRKIRCDGQDPCAACTQRKIVCVFKVESPKGRPRR 74
BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI) HSP 1 Score: 53.1 bits (126), Expect = 1.780e-5 Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 Query: 223 RASCDFCSRRKRKCDGVNPCQNCRKLKLVCHFSVKQKSG 339
R++CD C R KRKCDG+ PC CR+ C +S KQKSG
Sbjct: 208 RSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSG 246
BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 1.830e-5 Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 Query: 223 RASCDFCSRRKRKCDGVNPCQNCRKLKLVCHFSVKQKSG 339
R++CD C R KRKCDG+ PC CR+ C +S KQKSG
Sbjct: 184 RSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSG 222 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10622.606.1 >prot_H-canaliculatus_F_contig10622.606.1 ID=prot_H-canaliculatus_F_contig10622.606.1|Name=mRNA_H-canaliculatus_F_contig10622.606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=133bp MGNSDEDDASSHPLSAPRGTYRRQGPDFGPGPEGSRGSGGGVGGAGVGERback to top mRNA from alignment at H-canaliculatus_F_contig10622:1513..4508+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10622.606.1 ID=mRNA_H-canaliculatus_F_contig10622.606.1|Name=mRNA_H-canaliculatus_F_contig10622.606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2996bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10622:1513..4508+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10622:1513..4508+ >mRNA_H-canaliculatus_F_contig10622.606.1 ID=mRNA_H-canaliculatus_F_contig10622.606.1|Name=mRNA_H-canaliculatus_F_contig10622.606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10622:1513..4508+ (Hapterophycus canaliculatus Oshoro5f female)back to top |