mRNA_H-canaliculatus_F_contig10621.605.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: D7G8Y9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Y9_ECTSI) HSP 1 Score: 214 bits (546), Expect = 3.680e-62 Identity = 101/115 (87.83%), Postives = 106/115 (92.17%), Query Frame = 1 Query: 28 RAAAELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTVSKAGDGQRPIYDNDCMGQRDSRQSSCFGTPVRGESNSGSTLPPWVIPN 372
R AAELGSSV LTDSVGQRVEV LENRLG+GGQRNVTVYCPVWMVNTSHYRLRYRQDGQ+QMPAGTVSKAGDGQRPIY+NDC G RDS+QSSCF TP RGE SGS+LPPWVIPN
Sbjct: 4900 RPAAELGSSVALTDSVGQRVEVYLENRLGDGGQRNVTVYCPVWMVNTSHYRLRYRQDGQRQMPAGTVSKAGDGQRPIYENDCPGPRDSQQSSCFNTPARGEGGSGSSLPPWVIPN 5014
BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: A0A835ZCW3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCW3_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 8.950e-19 Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 Query: 40 ELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDG 201
E S +TLTD+VGQR+ + +ENR G GGQR+VTVY P WMVNTSHYR+R+RQDG
Sbjct: 90 ECASGITLTDAVGQRIALRVENRRGGGGQRHVTVYAPYWMVNTSHYRMRFRQDG 143
BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: A0A482SP39_9ARCH (SHR-BD domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP39_9ARCH) HSP 1 Score: 75.1 bits (183), Expect = 4.940e-15 Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1 Query: 52 SVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTVS 231
S+ LTD+VGQ++ + +EN G GGQR+V VYCP W+VNTS Y R R++G+ + AG+V+
Sbjct: 53 SIVLTDTVGQKLRLNVENTQGGGGQRHVVVYCPYWVVNTSQYAFRVREEGEMEQTAGSVT 112
BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: K0SGL5_THAOC (PDZ domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SGL5_THAOC) HSP 1 Score: 77.0 bits (188), Expect = 6.400e-14 Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 40 ELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTV-------SKAGDGQRPIY 261
++ S +T+ DS GQ++ +LL+N G GGQR V+VYCP W+VNT+ + L+Y+Q+ P+GTV SK DG IY
Sbjct: 2258 DVASELTVVDSQGQKLTLLLDNESGRGGQRRVSVYCPFWIVNTTEHSLKYKQEKATSFPSGTVIENHRDGSKPVDGSNRIY 2338
BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: B8CBY6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBY6_THAPS) HSP 1 Score: 75.9 bits (185), Expect = 1.650e-13 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 1 Query: 34 AAELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTVSKAG-DGQRPI 258
A ++ S + DS+GQR+ +L++N +G GGQR V++YCP W+VNT+ + L+YRQ+ + +GTVS DG +P+
Sbjct: 3307 AEDVASETNVVDSLGQRLTLLIDNVIGGGGQRRVSLYCPYWIVNTTEHSLKYRQENFQSFVSGTVSSPERDGSKPV 3382
BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: A0A7S2UDP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDP5_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 2.880e-13 Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 31 AAAELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTV-SKAGDGQRPI 258
+A ++ + T+ DS+GQR+ + ++N LG GGQR ++++CP W+VNT+ + RY+QD +GTV S A DG RP+
Sbjct: 157 SAEDVATETTVVDSLGQRLVLRIDNALGGGGQRKISLFCPFWIVNTTEHSFRYKQDKGSTYVSGTVLSPARDGSRPV 233
BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: A0A7R9UEG4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEG4_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 4.970e-12 Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1 Query: 55 VTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTVSK 234
+ L D GQ++ + +EN LG GGQR V VYCP WMVNT+ +RY ++G MPAGT +
Sbjct: 1380 IVLRDIQGQKLHLAIENTLGGGGQRQVVVYCPYWMVNTTGMDIRYHEEGVSAMPAGTAPR 1439
BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Match: A0A7S4MN01_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MN01_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 9.710e-10 Identity = 28/74 (37.84%), Postives = 48/74 (64.86%), Query Frame = 1 Query: 40 ELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPVWMVNTSHYRLRYRQDGQKQMPAGTV-SKAGDGQRPI 258
++ + + DS+GQR+ + +EN LG GGQR +T++ P W++NT+ + LRY+Q+ +GTV DG +P+
Sbjct: 937 DIATETAVVDSLGQRLNLGIENILGGGGQRKITLFSPYWILNTTEHSLRYKQEKTSAYVSGTVIDSKRDGSKPV 1010 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10621.605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10621.605.1 >prot_H-canaliculatus_F_contig10621.605.1 ID=prot_H-canaliculatus_F_contig10621.605.1|Name=mRNA_H-canaliculatus_F_contig10621.605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp GGGGGSGGGRAAAELGSSVTLTDSVGQRVEVLLENRLGEGGQRNVTVYCPback to top mRNA from alignment at H-canaliculatus_F_contig10621:1781..2942- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig10621.605.1 ID=mRNA_H-canaliculatus_F_contig10621.605.1|Name=mRNA_H-canaliculatus_F_contig10621.605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1162bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10621:1781..2942- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10621:1781..2942- >mRNA_H-canaliculatus_F_contig10621.605.1 ID=mRNA_H-canaliculatus_F_contig10621.605.1|Name=mRNA_H-canaliculatus_F_contig10621.605.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10621:1781..2942- (Hapterophycus canaliculatus Oshoro5f female)back to top |