Homology
BLAST of mRNA_H-canaliculatus_F_contig10618.603.1 vs. uniprot
Match: D7G8Y0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y0_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 3.850e-20 Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 Query: 49 FPGGGLFSFMAPGESISTIDRFTEATRGKGISKIFSPGTKPVPSPWAKVETKPVA 213
FPGGGLFSFMAPG SISTID+FTEATRGKG +KIFSPGTKP +PW KV+ KP A
Sbjct: 504 FPGGGLFSFMAPGNSISTIDKFTEATRGKGNAKIFSPGTKPAATPWGKVDKKPTA 558
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 517 |
| Cds size | 513 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928718.005639-CDS-H-canaliculatus_F_contig10618:2818..3004 | 1622928718.005639-CDS-H-canaliculatus_F_contig10618:2818..3004 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10618 2819..3004 - |
| 1696845537.6694992-CDS-H-canaliculatus_F_contig10618:2818..3004 | 1696845537.6694992-CDS-H-canaliculatus_F_contig10618:2818..3004 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10618 2819..3004 - |
| 1622928718.0261307-CDS-H-canaliculatus_F_contig10618:3306..3513 | 1622928718.0261307-CDS-H-canaliculatus_F_contig10618:3306..3513 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10618 3307..3513 - |
| 1696845537.6876433-CDS-H-canaliculatus_F_contig10618:3306..3513 | 1696845537.6876433-CDS-H-canaliculatus_F_contig10618:3306..3513 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10618 3307..3513 - |
| 1622928718.045295-CDS-H-canaliculatus_F_contig10618:4112..4232 | 1622928718.045295-CDS-H-canaliculatus_F_contig10618:4112..4232 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10618 4113..4232 - |
| 1696845537.6968706-CDS-H-canaliculatus_F_contig10618:4112..4232 | 1696845537.6968706-CDS-H-canaliculatus_F_contig10618:4112..4232 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10618 4113..4232 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10618.603.1 >prot_H-canaliculatus_F_contig10618.603.1 ID=prot_H-canaliculatus_F_contig10618.603.1|Name=mRNA_H-canaliculatus_F_contig10618.603.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=171bp
GRAAAVGGAAGAGGGGFPGGGLFSFMAPGESISTIDRFTEATRGKGISKI
FSPGTKPVPSPWAKVETKPVAGDHGGAGAGDGGGGGRGGGPTPALTAAEK
GALLKRMIMGGGGVEGGAAAAGGGTAAAPARQPDIGRSTSGGNGNGGGGS
GGWGGGGAAASTRPRQLQQQP back to topmRNA from alignment at H-canaliculatus_F_contig10618:2817..4232- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10618.603.1 ID=mRNA_H-canaliculatus_F_contig10618.603.1|Name=mRNA_H-canaliculatus_F_contig10618.603.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1416bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10618:2817..4232- (Hapterophycus canaliculatus Oshoro5f female)
GGTCGTGCGGCAGCAGTAGGAGGAGCAGCGGGGGCAGGGGGGGGAGGATT
CCCCGGCGGGGGGCTCTTTTCCTTCATGGCCCCGGGAGAGAGCATCTCGA
CGATCGATAGATTCACGGAGGTGAGGCATGGCCGAACGAAACCTCAAGCG
GACCTTCAAACGAACCCTCGAACATCTCAAACGAACCCTCAGGAGAGGAA
GCGCATCGGAGCGGGGGGGGGGGGCGGAGTGAGGGGCAGAGGCGGCACTA
CTGTCGCAACGTTCTTGTCCCGTTCGAGTTTTGTTGCCTGCGGGCTGGTG
CGTGTTTGGCCCACCCGTGCTCCGAAAGTCGATGGCAGCGAGTGCCGAAA
GGCGGGCGTAACGGCGAGCCAGGTGGCATGTGCTCTCCTCGCCTGCTCTC
CGTCTCGTCCGAGCCACGATTGTTCCCGAGTCACGATTGTCTCAACTGCG
TTATCATAGTAGCGATTCGTTGTTTGCGATACTGTAGGCGTGTTGAGGAT
GCTTCCAGGCCCCGCTCCTCCCGTCTCCGATAAATGAGCAGGCAGGCAAA
GACCAAGCCAAGCCTAGGCCATTGCAGGACAGAAAGCACCCTCGCAGCCC
CCGCAACGCAGAGCTTCCCGGGTAGGCCATGCCATGCTCAATCGCGAACG
CCAAAAACAAACTATCATAGACGTTGTTGTTGTTGTTGTTGTGTCGTCTT
GTCTCGTCTTGTCTCGTAGGCAACTCGTGGGAAAGGGATTTCCAAGATCT
TCTCCCCCGGCACCAAACCGGTTCCCTCCCCCTGGGCGAAAGTCGAAACC
AAGCCTGTTGCCGGAGATCACGGTGGCGCCGGCGCCGGTGATGGTGGTGG
TGGTGGCAGAGGAGGTGGGCCGACACCGGCGTTGACGGCGGCGGAGAAGG
GCGCTCTGCTGAAGCGCATGATCATGGTGGGCCTCGATTTCCTCCTCGCT
CGTCCCTGTTTTCGTATTTTCTCGTCGTTTTCGGTTGGTTGGTTGCGACT
GTACTGCTGGGCTTGTTTAGAGAGCCGTCGACCCCCCGGGAGCTACGTGC
ATTCAGCGCTTAAAGGCACACTCACAATATCCGTCGATGACAAAAGCACG
ATTTCACTCCTTGAGGACGATACCATCTCTTGACGGCCATACCATCTTTC
TTGATGGCCGTATCATGTCTTGATGACGACATCGTATGACGTTTGTTATT
ATTTCATCATCTCTTGTCCTGCACCCAGGGAGGAGGGGGGGTGGAAGGCG
GAGCGGCCGCGGCGGGAGGAGGAACAGCGGCCGCTCCCGCTAGACAGCCC
GACATCGGTAGATCTACGTCGGGCGGCAACGGAAACGGTGGTGGAGGGAG
TGGTGGCTGGGGCGGTGGTGGAGCTGCAGCAAGCACCAGGCCACGGCAAC
TGCAGCAACAGCCACC back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10618:2817..4232- >mRNA_H-canaliculatus_F_contig10618.603.1 ID=mRNA_H-canaliculatus_F_contig10618.603.1|Name=mRNA_H-canaliculatus_F_contig10618.603.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1026bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10618:2817..4232- (Hapterophycus canaliculatus Oshoro5f female)
GGTCGTGCGGCAGCAGTAGGAGGAGCAGCGGGGGCAGGGGGGGGAGGATT
CCCCGGCGGGGGGCTCTTTTCCTTCATGGCCCCGGGAGAGAGCATCTCGA
CGATCGATAGATTCACGGAGGGTCGTGCGGCAGCAGTAGGAGGAGCAGCG
GGGGCAGGGGGGGGAGGATTCCCCGGCGGGGGGCTCTTTTCCTTCATGGC
CCCGGGAGAGAGCATCTCGACGATCGATAGATTCACGGAGGCAACTCGTG
GGAAAGGGATTTCCAAGATCTTCTCCCCCGGCACCAAACCGGTTCCCTCC
CCCTGGGCGAAAGTCGAAACCAAGCCTGTTGCCGGAGATCACGGTGGCGC
CGGCGCCGGTGATGGTGGTGGTGGTGGCAGAGGAGGTGGGCCGACACCGG
CGTTGACGGCGGCGGAGAAGGGCGCTCTGCTGAAGCGCATGATCATGGCA
ACTCGTGGGAAAGGGATTTCCAAGATCTTCTCCCCCGGCACCAAACCGGT
TCCCTCCCCCTGGGCGAAAGTCGAAACCAAGCCTGTTGCCGGAGATCACG
GTGGCGCCGGCGCCGGTGATGGTGGTGGTGGTGGCAGAGGAGGTGGGCCG
ACACCGGCGTTGACGGCGGCGGAGAAGGGCGCTCTGCTGAAGCGCATGAT
CATGGGAGGAGGGGGGGTGGAAGGCGGAGCGGCCGCGGCGGGAGGAGGAA
CAGCGGCCGCTCCCGCTAGACAGCCCGACATCGGTAGATCTACGTCGGGC
GGCAACGGAAACGGTGGTGGAGGGAGTGGTGGCTGGGGCGGTGGTGGAGC
TGCAGCAAGCACCAGGCCACGGCAACTGCAGCAACAGCCAGGAGGAGGGG
GGGTGGAAGGCGGAGCGGCCGCGGCGGGAGGAGGAACAGCGGCCGCTCCC
GCTAGACAGCCCGACATCGGTAGATCTACGTCGGGCGGCAACGGAAACGG
TGGTGGAGGGAGTGGTGGCTGGGGCGGTGGTGGAGCTGCAGCAAGCACCA
GGCCACGGCAACTGCAGCAACAGCCA back to top
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