Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1248 |
| Cds size | 894 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928717.870103-UTR-H-canaliculatus_F_contig10616:824..991 | 1622928717.870103-UTR-H-canaliculatus_F_contig10616:824..991 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10616 825..991 + |
| 1696845537.616063-UTR-H-canaliculatus_F_contig10616:824..991 | 1696845537.616063-UTR-H-canaliculatus_F_contig10616:824..991 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10616 825..991 + |
| 1622928717.9572074-UTR-H-canaliculatus_F_contig10616:2701..2888 | 1622928717.9572074-UTR-H-canaliculatus_F_contig10616:2701..2888 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10616 2702..2888 + |
| 1696845537.6607752-UTR-H-canaliculatus_F_contig10616:2701..2888 | 1696845537.6607752-UTR-H-canaliculatus_F_contig10616:2701..2888 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10616 2702..2888 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928717.8970416-CDS-H-canaliculatus_F_contig10616:991..1368 | 1622928717.8970416-CDS-H-canaliculatus_F_contig10616:991..1368 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10616 992..1368 + |
| 1696845537.6279542-CDS-H-canaliculatus_F_contig10616:991..1368 | 1696845537.6279542-CDS-H-canaliculatus_F_contig10616:991..1368 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10616 992..1368 + |
| 1622928717.9203172-CDS-H-canaliculatus_F_contig10616:1883..2314 | 1622928717.9203172-CDS-H-canaliculatus_F_contig10616:1883..2314 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10616 1884..2314 + |
| 1696845537.6412196-CDS-H-canaliculatus_F_contig10616:1883..2314 | 1696845537.6412196-CDS-H-canaliculatus_F_contig10616:1883..2314 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10616 1884..2314 + |
| 1622928717.9383345-CDS-H-canaliculatus_F_contig10616:2615..2701 | 1622928717.9383345-CDS-H-canaliculatus_F_contig10616:2615..2701 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10616 2616..2701 + |
| 1696845537.6523356-CDS-H-canaliculatus_F_contig10616:2615..2701 | 1696845537.6523356-CDS-H-canaliculatus_F_contig10616:2615..2701 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10616 2616..2701 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10616.602.1 >prot_H-canaliculatus_F_contig10616.602.1 ID=prot_H-canaliculatus_F_contig10616.602.1|Name=mRNA_H-canaliculatus_F_contig10616.602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=298bp
MPLPLLLLLPSRVTRPCGQRWTMPEPHLPCRHSVVILKRSDGSWRTSSRA
CTASKHCCGSSNNGNKTRRVRQPRRKNSASLKKTRLSRPRLRRPSKPNWP
SFKPLLPRWTRSFLGGSPLEPAANRSTSGHLPSLVNAVIKRGGPTTAPPG
IGATAPTGTGATTLTGTAGIASTGTGDTSEAQHARTAAALPASITAAALP
TAPAAAPINTTAAAPLLIITATPPPLRTGETPLPPFSVDVPPVGAGRFCQ
STAPVLHCGVGVRVPLLAPAGFRRNARPNACADTAAPATAAFVGIPP* back to topmRNA from alignment at H-canaliculatus_F_contig10616:825..2888+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10616.602.1 ID=mRNA_H-canaliculatus_F_contig10616.602.1|Name=mRNA_H-canaliculatus_F_contig10616.602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2064bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10616:825..2888+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGGATCCTACCATGGACAGCTCTTCACTGGTGGACTACGAGAAGGACG
ATGATCCTCTGCTACGAAACACACGGCTTCGCGACAGTCTTTTGCATTCG
GCTTCGGGGTCTCCATCTCCGCTGACATCTCCCAGTACCTTCACGGCAGC
TGCTGCTGCCCCGGCCAATGCCTTTGCCTCTGCTGCTTCTCCTGCCGTCG
CGGGTGACCCGGCCTTGCGGGCAAAGGTGGACCATGCCAGAGCCTCACTT
GCCGTGTCGACACAGCGTCGTCATTCTCAAACGCTCCGACGGCAGTTGGC
GGACGTCAAGCAGGGCTTGCACCGCAAGCAAACACTGTTGCGGTAGCAGC
AACAACGGGAACAAGACGAGGCGCGTGCGGCAGCCCAGGCGGAAGAACAG
CGCCAGCTTGAAGAAGACGCGGCTCAGCAGGCCGCGGCTAAGAAGGCCCT
CGAAGCCGAACTGGCCGAGCTTCAAGCCGCTACTACCGAGGTGGACGCGC
AGCTTTCTGGGCGGATCCCCGCTGGAACCGGCCGCAAATCGCAGGTGAAC
GATCAGGTTTCTTACTCAGACGGTCGACCTTCGTTTTTCGTTACCATGTT
GACTTCCCCCGCCCCCGCTTCAGCAGAAGCCACGTCTATCGACCCAGACG
CATACGTCGAGCCCTCCGCACCTTTTGCTACAGCATCTGCTCCGGTTTTC
TCCAACGCTGCCGACTATGTGCTTGATGATTTGGACAAGTTTTATCAGCA
TGCCCCGTTGAGTCAGCCGGCACATGAAACACCCATCGTCCACCTCGCGG
GTGCCAACGAAGCCTGGTGTGGGTGCCGTACGATTGCGAGGGGTTACTAC
CAGCGCAAAAACACATGACAGTCGGCGATTTGCTCCGCATCCCCTCGAGC
AAATTGTCTCCTGCGGAACATGCTCTTCGTTGCCGACTTGTGGGTATGTT
TCGTACCGGATTTATGGGTCTTTCTTCTGCGCAAGGCTGCTCTTTTGCTG
TTTCTACCCCCCCTCCGGCTCCTCCCGCTCCCCTTCCCGCATCGCCGCAT
CTCGCCCAGCACCAGCGGTCATCTCCCCTCTCTGGTCAACGCCGTGATAA
AGCGGGGAGGACCCACAACCGCACCACCGGGGATCGGAGCAACCGCTCCA
ACGGGGACCGGGGCAACCACCCTAACGGGGACCGCGGGAATCGCTTCAAC
GGGGACCGGGGACACGTCAGAAGCTCAGCACGCGAGGACGGCCGCAGCTC
TCCCCGCTTCCATCACCGCAGCAGCTCTTCCAACAGCACCGGCCGCAGCG
CCAATCAACACGACGGCCGCAGCGCCACTTCTGATCATCACGGCGACACC
ACCACCGCTGCGCACGGGGGAAACACCCCTTCCCCCGTTCTCCGTGGACG
TGCCGCCCGTCGGAGCCGGTCGCTTCTGTCAGTCAACAGCTCCAGTTCTC
CACTGCGGAGTCGGAGTCAGGGTTCCCCTTCTCGCTCCAGGCAAGTCGAT
GGTCATGCTCGTTTTTCCGTTGATGCCGCGAACCCTCCGCCCGCTTATGC
TCGTCGCAATGTGCCTTCCTTGGGTTTTCGTTTAGCTGGTTTGCAAATTA
GCGATCATGCCGACCGCTTGCGGCTTTTCGAGCCGGATGCACCGCCCCAC
CGATCTTCAGTAGCTGTCCAGGCGCCCAGGCCTTCCGTAGACGACGCTCC
GCACCAATCCGTTGCTTCTTCGTCAAACTCGCGTACCGAGCAATTGTTGG
AAGAATTACTGGCTCCTATGCGTGCGCCTCCCCCGCCGCAGCCGGATTTC
GCAGAAATGCTCGCCCTAATGCGTGCGCAGACACAGCCGCACCCGCAACA
GCAGCATTCGTCGGTATCCCACCCTGAGCCACCACCAGCAAGTTCTCCGA
CGTCCTGCCAACCGTGGACTCGGCAACCGCCTGCAGCGCCGGCAACAGAC
CAGCACACGACTACACTACCCTCTCCGGTGGTGCACCCTTCGGAGGACGA
CAACCTCGACCAACCGCTGTCGTCTACCGGTGCCCGGAAGAGACAGGCTG
CTGCGGACGCTGCG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10616:825..2888+ >mRNA_H-canaliculatus_F_contig10616.602.1 ID=mRNA_H-canaliculatus_F_contig10616.602.1|Name=mRNA_H-canaliculatus_F_contig10616.602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1788bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10616:825..2888+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTTTGCCTCTGCTGCTTCTCCTGCCGTCGCGGGTGACCCGGCCTTG
CGGGCAAAGGTGGACCATGCCAGAGCCTCACTTGCCGTGTCGACACAGCG
TCGTCATTCTCAAACGCTCCGACGGCAGTTGGCGGACGTCAAGCAGGGCT
TGCACCGCAAGCAAACACTGTTGCGGTAGCAGCAACAACGGGAACAAGAC
GAGGCGCGTGCGGCAGCCCAGGCGGAAGAACAGCGCCAGCTTGAAGAAGA
CGCGGCTCAGCAGGCCGCGGCTAAGAAGGCCCTCGAAGCCGAACTGGCCG
AGCTTCAAGCCGCTACTACCGAGGTGGACGCGCAGCTTTCTGGGCGGATC
CCCGCTGGAACCGGCCGCAAATCGCAGATGCCTTTGCCTCTGCTGCTTCT
CCTGCCGTCGCGGGTGACCCGGCCTTGCGGGCAAAGGTGGACCATGCCAG
AGCCTCACTTGCCGTGTCGACACAGCGTCGTCATTCTCAAACGCTCCGAC
GGCAGTTGGCGGACGTCAAGCAGGGCTTGCACCGCAAGCAAACACTGTTG
CGGTAGCAGCAACAACGGGAACAAGACGAGGCGCGTGCGGCAGCCCAGGC
GGAAGAACAGCGCCAGCTTGAAGAAGACGCGGCTCAGCAGGCCGCGGCTA
AGAAGGCCCTCGAAGCCGAACTGGCCGAGCTTCAAGCCGCTACTACCGAG
GTGGACGCGCAGCTTTCTGGGCGGATCCCCGCTGGAACCGGCCGCAAATC
GCAGCACCAGCGGTCATCTCCCCTCTCTGGTCAACGCCGTGATAAAGCGG
GGAGGACCCACAACCGCACCACCGGGGATCGGAGCAACCGCTCCAACGGG
GACCGGGGCAACCACCCTAACGGGGACCGCGGGAATCGCTTCAACGGGGA
CCGGGGACACGTCAGAAGCTCAGCACGCGAGGACGGCCGCAGCTCTCCCC
GCTTCCATCACCGCAGCAGCTCTTCCAACAGCACCGGCCGCAGCGCCAAT
CAACACGACGGCCGCAGCGCCACTTCTGATCATCACGGCGACACCACCAC
CGCTGCGCACGGGGGAAACACCCCTTCCCCCGTTCTCCGTGGACGTGCCG
CCCGTCGGAGCCGGTCGCTTCTGTCAGTCAACAGCTCCAGTTCTCCACTG
CGGAGTCGGAGTCAGGGTTCCCCTTCTCGCTCCAGCACCAGCGGTCATCT
CCCCTCTCTGGTCAACGCCGTGATAAAGCGGGGAGGACCCACAACCGCAC
CACCGGGGATCGGAGCAACCGCTCCAACGGGGACCGGGGCAACCACCCTA
ACGGGGACCGCGGGAATCGCTTCAACGGGGACCGGGGACACGTCAGAAGC
TCAGCACGCGAGGACGGCCGCAGCTCTCCCCGCTTCCATCACCGCAGCAG
CTCTTCCAACAGCACCGGCCGCAGCGCCAATCAACACGACGGCCGCAGCG
CCACTTCTGATCATCACGGCGACACCACCACCGCTGCGCACGGGGGAAAC
ACCCCTTCCCCCGTTCTCCGTGGACGTGCCGCCCGTCGGAGCCGGTCGCT
TCTGTCAGTCAACAGCTCCAGTTCTCCACTGCGGAGTCGGAGTCAGGGTT
CCCCTTCTCGCTCCAGCCGGATTTCGCAGAAATGCTCGCCCTAATGCGTG
CGCAGACACAGCCGCACCCGCAACAGCAGCATTCGTCGGTATCCCACCCT
GACCGGATTTCGCAGAAATGCTCGCCCTAATGCGTGCGCAGACACAGCCG
CACCCGCAACAGCAGCATTCGTCGGTATCCCACCCTGA back to top
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