Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 708 |
| Cds size | 567 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928717.4947927-UTR-H-canaliculatus_F_contig10612:4017..4050 | 1622928717.4947927-UTR-H-canaliculatus_F_contig10612:4017..4050 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10612 4018..4050 + |
| 1696845537.4742591-UTR-H-canaliculatus_F_contig10612:4017..4050 | 1696845537.4742591-UTR-H-canaliculatus_F_contig10612:4017..4050 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10612 4018..4050 + |
| 1622928717.5430696-UTR-H-canaliculatus_F_contig10612:4617..4725 | 1622928717.5430696-UTR-H-canaliculatus_F_contig10612:4617..4725 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10612 4618..4725 + |
| 1696845537.4943006-UTR-H-canaliculatus_F_contig10612:4617..4725 | 1696845537.4943006-UTR-H-canaliculatus_F_contig10612:4617..4725 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10612 4618..4725 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928717.5148482-CDS-H-canaliculatus_F_contig10612:4050..4617 | 1622928717.5148482-CDS-H-canaliculatus_F_contig10612:4050..4617 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10612 4051..4617 + |
| 1696845537.4861786-CDS-H-canaliculatus_F_contig10612:4050..4617 | 1696845537.4861786-CDS-H-canaliculatus_F_contig10612:4050..4617 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10612 4051..4617 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10612.599.1 >prot_H-canaliculatus_F_contig10612.599.1 ID=prot_H-canaliculatus_F_contig10612.599.1|Name=mRNA_H-canaliculatus_F_contig10612.599.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=189bp
MATTRAASAANAAGEAVSVTPVVLENDTKAPYYGVKYSETAARAFYTRVV
EYEKRVKHANTGGAMQRELAPMAQLIPNPVQRVLARVFKYDYPLSPENLL
VAVRKHAGHEAGANVDLSAASTAVAKAVAMDRQGTTMLERVEPILSGLET
FFEENPNFEALYRSPEGSYIKGPAEIITKALVGGRTVA* back to topmRNA from alignment at H-canaliculatus_F_contig10612:4018..4725+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10612.599.1 ID=mRNA_H-canaliculatus_F_contig10612.599.1|Name=mRNA_H-canaliculatus_F_contig10612.599.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10612:4018..4725+ (Hapterophycus canaliculatus Oshoro5f female)
CGAAGTCGGGCGCGTTGTAGAGTGATTGCCGCGATGGCGACCACTCGAGC
AGCATCAGCTGCTAACGCCGCTGGTGAGGCGGTAAGCGTGACGCCCGTCG
TTTTGGAGAACGACACCAAAGCCCCCTATTATGGGGTGAAGTACTCTGAG
ACTGCGGCGCGAGCTTTCTACACTCGCGTCGTGGAGTACGAAAAGCGCGT
GAAGCATGCTAATACGGGGGGCGCTATGCAGCGCGAGTTGGCGCCGATGG
CGCAACTTATTCCAAATCCCGTGCAGCGAGTTTTGGCCCGTGTCTTCAAA
TACGATTATCCCCTCTCACCGGAGAATCTTCTCGTTGCGGTGAGGAAACA
TGCGGGCCATGAAGCGGGCGCCAACGTGGATTTATCCGCGGCGTCTACCG
CCGTGGCGAAGGCTGTCGCCATGGATAGACAGGGGACGACGATGCTGGAA
AGGGTGGAGCCCATTTTGTCTGGTTTGGAAACTTTCTTCGAAGAAAATCC
GAATTTCGAGGCGCTTTATCGCTCCCCTGAAGGCTCGTATATCAAGGGCC
CGGCTGAGATCATTACAAAGGCGTTGGTTGGTGGAAGGACTGTCGCCTGA
AAAGTTCAAACAAGATGTTATGTTGAAGCTGAGGCACACGGGTGGTTGGA
AGAACGACCCTGACCTCGTCATGGATACCATCGTGGATGCTGCCAAGGAG
TGGCGGAA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10612:4018..4725+ >mRNA_H-canaliculatus_F_contig10612.599.1 ID=mRNA_H-canaliculatus_F_contig10612.599.1|Name=mRNA_H-canaliculatus_F_contig10612.599.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1134bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10612:4018..4725+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGACCACTCGAGCAGCATCAGCTGCTAACGCCGCTGGTGAGGCGGT
AAGCGTGACGCCCGTCGTTTTGGAGAACGACACCAAAGCCCCCTATTATG
GGGTGAAGTACTCTGAGACTGCGGCGCGAGCTTTCTACACTCGCGTCGTG
GAGTACGAAAAGCGCGTGAAGCATGCTAATACGGGGGGCGCTATGCAGCG
CGAGTTGGCGCCGATGGCGCAACTTATTCCAAATCCCGTGCAGCGAGTTT
TGGCCCGTGTCTTCAAATACGATTATCCCCTCTCACCGGAGAATCTTCTC
GTTGCGGTGAGGAAACATGCGGGCCATGAAGCGGGCGCCAACGTGGATTT
ATCCGCGGCGTCTACCGCCGTGGCGAAGGCTGTCGCCATGGATAGACAGG
GGACGACGATGCTGGAAAGGGTGGAGCCCATTTTGTCTGGTTTGGAAACT
TTCTTCGAAGAAAATCCGAATTTCGAGGCGCTTTATCGCTCCCCTGAAGG
CTCGTATATCAAGGGCCCGGCTGAGATCATTACAAAGGCGTTGGTTGGTG
GAAGGACTGTCGCCTGAATGGCGACCACTCGAGCAGCATCAGCTGCTAAC
GCCGCTGGTGAGGCGGTAAGCGTGACGCCCGTCGTTTTGGAGAACGACAC
CAAAGCCCCCTATTATGGGGTGAAGTACTCTGAGACTGCGGCGCGAGCTT
TCTACACTCGCGTCGTGGAGTACGAAAAGCGCGTGAAGCATGCTAATACG
GGGGGCGCTATGCAGCGCGAGTTGGCGCCGATGGCGCAACTTATTCCAAA
TCCCGTGCAGCGAGTTTTGGCCCGTGTCTTCAAATACGATTATCCCCTCT
CACCGGAGAATCTTCTCGTTGCGGTGAGGAAACATGCGGGCCATGAAGCG
GGCGCCAACGTGGATTTATCCGCGGCGTCTACCGCCGTGGCGAAGGCTGT
CGCCATGGATAGACAGGGGACGACGATGCTGGAAAGGGTGGAGCCCATTT
TGTCTGGTTTGGAAACTTTCTTCGAAGAAAATCCGAATTTCGAGGCGCTT
TATCGCTCCCCTGAAGGCTCGTATATCAAGGGCCCGGCTGAGATCATTAC
AAAGGCGTTGGTTGGTGGAAGGACTGTCGCCTGA back to top
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