Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-27_000575.1 |
| Exons | 2 |
| Model size | 617 |
| Cds size | 582 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928716.5733948-UTR-H-canaliculatus_F_contig1061:28572..28607 | 1622928716.5733948-UTR-H-canaliculatus_F_contig1061:28572..28607 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1061 28573..28607 + |
| 1696845536.6914222-UTR-H-canaliculatus_F_contig1061:28572..28607 | 1696845536.6914222-UTR-H-canaliculatus_F_contig1061:28572..28607 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig1061 28573..28607 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928716.5851243-CDS-H-canaliculatus_F_contig1061:28607..28649 | 1622928716.5851243-CDS-H-canaliculatus_F_contig1061:28607..28649 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1061 28608..28649 + |
| 1696845536.701338-CDS-H-canaliculatus_F_contig1061:28607..28649 | 1696845536.701338-CDS-H-canaliculatus_F_contig1061:28607..28649 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1061 28608..28649 + |
| 1622928716.5958824-CDS-H-canaliculatus_F_contig1061:29825..30365 | 1622928716.5958824-CDS-H-canaliculatus_F_contig1061:29825..30365 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1061 29826..30365 + |
| 1696845536.709294-CDS-H-canaliculatus_F_contig1061:29825..30365 | 1696845536.709294-CDS-H-canaliculatus_F_contig1061:29825..30365 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig1061 29826..30365 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1061.597.1 >prot_H-canaliculatus_F_contig1061.597.1 ID=prot_H-canaliculatus_F_contig1061.597.1|Name=mRNA_H-canaliculatus_F_contig1061.597.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=194bp
MDLNYAKWDRVVEEDSSGDEGGGGARISASARRSSAGASSGCNDPTCCNC
SPDNMFPDFEAMSSMSSMISSGLVPPDGMSEMPSEAASMFSTMFGGSSGN
FAAFAAGMAGAAGGGGGRQRGQGPSADAAAGATSGTEGDSDQDDDCTEPP
PLDPGSSSEDGAGDGGRGGAGGGGKREGTGGGSGGGDGGDGSE* back to topmRNA from alignment at H-canaliculatus_F_contig1061:28573..30365+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig1061.597.1 ID=mRNA_H-canaliculatus_F_contig1061.597.1|Name=mRNA_H-canaliculatus_F_contig1061.597.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1793bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1061:28573..30365+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGCACTCTAAGGGTAGGGGCGTGAACCAGAGGAATGGACCTAAATTAC
GCCAAATGGGATCGAGTGGTGGAGGAGGTGAGTGCTTGGATCCAGGGAGC
GGTGACCGCACGGACACCTTGCCTATGCGATAGGATCGTGAGGGATGACA
TACAACGAGAGGGACCACGAGAGGATGCATGTTCCTACTTGTCGTCCAGG
GAAGCAGCCAGAGTGCCCTCCACACAACAGCCCCCGGCCAGGACGACGCC
ACAGCCATGATGGCTGTTCCCGAAATCATCTGAAAAACAACCCGCGCACG
GCCGGGGTGTCTGTCTGTAGGCACTTTGCCGTTCACGTCCGATAAATTTG
GCGAGAGAGATTCCTCATAACCCCGGGAAAGGAAGGAGCGACAACAGCAA
CAGCAGTGGCGGTCGAATAGAGCTAGTGACAACTCATCCGTCTATATTTC
TCGTTGCTCCCCCTCACGCTCGCGGCGAGCTCTTTGGCGCCCCTTTCTGT
AGTGTGGTGAGGATGGGTTCGTTCGTAGAATGGTTGCGGGGAGTGGGGCT
GCTGCTGGAGAAGCCTAGCACTAGTCATGGACGCGCTCTCCGCTGCCGCA
CGCGCGTGCATTGGATCATGTGTGGCAGGGACTCTTTAGTTTCAAAGATC
CATCCCCTGTGTTCCTTTATTTTTTATTTTCTCGCCATGGACTGCAGCAT
CATACAAGCCGTCTCGTTTTTTTGTTTTTTGGGGCACCGAACCTTTGCAA
ACCCTCGGTCGGTCTGTGTACAAAACTCACCTCGAGCGCTTCGGATGGAA
CACGCACGCATCGCACAGGTACTGTTTTCGCGAAAGCAGTTACCGCGCCT
TACCAGGCTGGGATATTACTGCGTACCGCAACTGATTTAACGAGCATTTT
GAATCTTGTGTTTTTTTCCCGCCATCCGATCAAGCGTTGAGCCTTCCGTT
TTTGAGTCGTCCTACATGAGGACCGCATCCATCCATCCCCCATCCTTCCA
AGTCTACAAGTAGCTGTGAAGAGTATGCTGCGCACGTCCAGCTAAGGGAC
CAAAACCTTGCCAGCCCACACTCAAGCCTTCCTCTCGTCCTCCTTGTTGA
AAACTTGGGTTGCGTACAAATACGTTTGCACAAACGCACAGCAAGTACTA
CTAATTTACCATGTACCAGGTAATTTCAGGCCGTATTTCCCCGACATAGG
AAGAAGTACAAAAACACCCCGCCCCAACCCTTTGCCCCCAACCACCGGCA
CAGGATTCAAGCGGGGACGAGGGCGGCGGAGGGGCCAGGATTAGCGCCTC
CGCGAGGCGCTCGTCCGCCGGCGCCAGCAGTGGCTGCAACGACCCCACTT
GCTGCAACTGCTCGCCGGACAATATGTTCCCCGACTTCGAAGCGATGTCC
TCAATGTCTTCCATGATATCGAGCGGCCTCGTCCCCCCCGACGGAATGTC
CGAGATGCCCTCCGAGGCGGCCAGCATGTTCTCCACGATGTTCGGAGGCT
CTTCGGGCAATTTCGCCGCTTTCGCCGCGGGCATGGCCGGCGCTGCCGGC
GGTGGAGGCGGGAGGCAGCGTGGACAGGGGCCCTCGGCGGACGCAGCGGC
CGGGGCGACAAGCGGGACGGAGGGCGACTCCGATCAAGACGATGACTGTA
CGGAGCCGCCGCCACTTGACCCTGGCAGCTCTTCGGAGGACGGAGCCGGT
GATGGTGGACGGGGGGGAGCGGGGGGCGGAGGGAAGAGGGAAGGAACTGG
CGGGGGTAGCGGGGGCGGGGATGGAGGCGACGGAAGTGAGTGA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig1061:28573..30365+ >mRNA_H-canaliculatus_F_contig1061.597.1 ID=mRNA_H-canaliculatus_F_contig1061.597.1|Name=mRNA_H-canaliculatus_F_contig1061.597.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1164bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1061:28573..30365+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACCTAAATTACGCCAAATGGGATCGAGTGGTGGAGGAGATGGACCT
AAATTACGCCAAATGGGATCGAGTGGTGGAGGAGGATTCAAGCGGGGACG
AGGGCGGCGGAGGGGCCAGGATTAGCGCCTCCGCGAGGCGCTCGTCCGCC
GGCGCCAGCAGTGGCTGCAACGACCCCACTTGCTGCAACTGCTCGCCGGA
CAATATGTTCCCCGACTTCGAAGCGATGTCCTCAATGTCTTCCATGATAT
CGAGCGGCCTCGTCCCCCCCGACGGAATGTCCGAGATGCCCTCCGAGGCG
GCCAGCATGTTCTCCACGATGTTCGGAGGCTCTTCGGGCAATTTCGCCGC
TTTCGCCGCGGGCATGGCCGGCGCTGCCGGCGGTGGAGGCGGGAGGCAGC
GTGGACAGGGGCCCTCGGCGGACGCAGCGGCCGGGGCGACAAGCGGGACG
GAGGGCGACTCCGATCAAGACGATGACTGTACGGAGCCGCCGCCACTTGA
CCCTGGCAGCTCTTCGGAGGACGGAGCCGGTGATGGTGGACGGGGGGGAG
CGGGGGGCGGAGGGAAGAGGGAAGGAACTGGCGGGGGTAGCGGGGGCGGG
GATGGAGGCGACGGAAGTGAGTGAGATTCAAGCGGGGACGAGGGCGGCGG
AGGGGCCAGGATTAGCGCCTCCGCGAGGCGCTCGTCCGCCGGCGCCAGCA
GTGGCTGCAACGACCCCACTTGCTGCAACTGCTCGCCGGACAATATGTTC
CCCGACTTCGAAGCGATGTCCTCAATGTCTTCCATGATATCGAGCGGCCT
CGTCCCCCCCGACGGAATGTCCGAGATGCCCTCCGAGGCGGCCAGCATGT
TCTCCACGATGTTCGGAGGCTCTTCGGGCAATTTCGCCGCTTTCGCCGCG
GGCATGGCCGGCGCTGCCGGCGGTGGAGGCGGGAGGCAGCGTGGACAGGG
GCCCTCGGCGGACGCAGCGGCCGGGGCGACAAGCGGGACGGAGGGCGACT
CCGATCAAGACGATGACTGTACGGAGCCGCCGCCACTTGACCCTGGCAGC
TCTTCGGAGGACGGAGCCGGTGATGGTGGACGGGGGGGAGCGGGGGGCGG
AGGGAAGAGGGAAGGAACTGGCGGGGGTAGCGGGGGCGGGGATGGAGGCG
ACGGAAGTGAGTGA back to top
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