mRNA_H-canaliculatus_F_contig1061.594.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1061.594.1 vs. uniprot
Match: D7FIP5_ECTSI (Uncharacterized protein ycf23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP5_ECTSI) HSP 1 Score: 484 bits (1245), Expect = 1.400e-161 Identity = 266/282 (94.33%), Postives = 273/282 (96.81%), Query Frame = 1 Query: 1432 MRSTCFVAAAAALSCADAFCFSPARMSSGDVLAPFHAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPELVRAAKAVSDVPVCVSAVDPELFPACVAAGAEMVELGNFDCFYDQGMTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDEQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISRAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAISSAMGLPKSSAVEEPRSVEKATA 2277
MRSTC +AAAAALSCADAFCFSPARMS GDVLAPF AGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDP+LVRAAKAVS+VPVCVSAVDPELFPACV AGAEMVELGNFDCFYDQG+TFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLD+QVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAIS+AVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAI+SAMGLPK SAVE P S KATA
Sbjct: 1 MRSTCVIAAAAALSCADAFCFSPARMS-GDVLAPFQAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPDLVRAAKAVSNVPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGLTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVEAPVSAGKATA 281
BLAST of mRNA_H-canaliculatus_F_contig1061.594.1 vs. uniprot
Match: A0A835YK10_9STRA (Uncharacterized protein ycf23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK10_9STRA) HSP 1 Score: 307 bits (786), Expect = 1.090e-93 Identity = 165/240 (68.75%), Postives = 198/240 (82.50%), Query Frame = 1 Query: 1513 SGDVLAPFHAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPELVRAAKAVS-DVPVCVSAVDPELFPACVAAGAEMVELGNFDCFYDQGMTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDEQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISRAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAISSAMGLP 2229
SGD +APF A KALK+ISG+ FD++LV KVA AA AGG TH+DIA DPELV+ AK + V +CVSA++PEL CV AGA+MVELGNFD FYDQGM F+A+DV+ MT+ TRALLP TPLSVT+PH L +D+QV LA L+ LGVDVIQTEGK+SLDPS GG+QG IERAAP LAA +AI+RAV IPVM +SG+S+VTA MALAAGA GVGVGSAVNKLN+++ M+AVVRA++ AM LP
Sbjct: 24 SGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDLP 263
BLAST of mRNA_H-canaliculatus_F_contig1061.594.1 vs. uniprot
Match: A0A1Y1HWD8_KLENI (Uncharacterized protein ycf23 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWD8_KLENI) HSP 1 Score: 278 bits (711), Expect = 2.460e-82 Identity = 153/239 (64.02%), Postives = 187/239 (78.24%), Query Frame = 1 Query: 1510 SSGDVLAPFHAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPELVRAAKAVSDVPVCVSAVDPELFPACVAAGAEMVELGNFDCFYDQGMTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDEQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISRAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAISSAMGL 2226
S DVL PF KA KVI+GL F+ + V+++ AA GG TH+DIACDPELV+ A +++ VPVCVSAV+PELF VAAGA MVE+GN+D FY +G TF AE+VL +TR+TR LLPT PLSVTVPHTL L +QV LA LE G D+IQTEG S P++ G+ G IE+A+PTLAAA++ISRAVSIPVM ASG+SDVTA MA+AAGA GVGVGSA+NKLNS I M+A RAI++A+GL
Sbjct: 64 SRQDVLRPFAEKKAFKVIAGLKNFNRENVAEIVAAAEQGGATHVDIACDPELVKLACSLTSVPVCVSAVEPELFVPAVAAGATMVEIGNYDPFYAEGRTFDAEEVLALTRRTRQLLPTIPLSVTVPHTLPLPDQVHLAELLENAGADIIQTEGGVSSAPTQAGVAGMIEKASPTLAAAYSISRAVSIPVMCASGISDVTASMAIAAGAAGVGVGSAINKLNSGIAMIAATRAIANALGL 302
BLAST of mRNA_H-canaliculatus_F_contig1061.594.1 vs. uniprot
Match: U5DGR7_9CHRO (Pyruvate/oxaloacetate carboxyltransferase n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DGR7_9CHRO) HSP 1 Score: 273 bits (698), Expect = 2.080e-81 Identity = 152/239 (63.60%), Postives = 184/239 (76.99%), Query Frame = 1 Query: 1528 APFHAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPELVRAAKAVSDVPVCVSAVDPELFPACVAAGAEMVELGNFDCFYDQGMTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDEQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISRAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAISSAMGLPKSSAV 2244
A F ALK+ISGLN F+ D V+ VARAAAAGG T +DIA PELVR A+ D+P+C SAV+PE F A VAAGA+++E+GNFDCFY QG F AE+VL +TR TRALLP LSVTVPH L LD QV LA +L G DVIQTEG S P+ GG+ GAIE+AAPTLAAAH ISRAV +PV+ ASGL+DVTAP+A+AAGA G+GVGSAVN+LNS++ MVA VR++ +A+ +SSAV
Sbjct: 8 AAFARRNALKIISGLNNFNGDRVAAVARAAAAGGATFVDIAASPELVRRARQACDLPICTSAVEPEAFVAAVAAGADLIEIGNFDCFYAQGRRFEAEEVLALTRATRALLPQVMLSVTVPHVLPLDAQVQLAEDLVRAGADVIQTEGGTSSQPAHGGVLGAIEKAAPTLAAAHCISRAVDVPVLCASGLTDVTAPLAIAAGAAGIGVGSAVNRLNSKVAMVAAVRSLVAAL---ESSAV 243
BLAST of mRNA_H-canaliculatus_F_contig1061.594.1 vs. uniprot
Match: A0A7S0QE85_9CRYP (Uncharacterized protein ycf23 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QE85_9CRYP) HSP 1 Score: 273 bits (699), Expect = 6.170e-81 Identity = 152/245 (62.04%), Postives = 187/245 (76.33%), Query Frame = 1 Query: 1489 CFSPARMSSGDVLAPFHAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPELVRAAKAVSDVPVCVSAVDPELFPACVAAGAEMVELGNFDCFYDQGMTFSAEDVLEMTRKTRALL-PTTPLSVTVPHTLDLDEQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISRAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAISSAM 2220
C S +S VL PF ALK+ISGL F++ VS+V +AA+AGG TH+DIAC ELV A++++D+P+CVS+VDP+ F A V AGA MVE+GN+D FY +G FSAE+VL +TR+TRALL PLSVTVPHTL LD+QV LA+ELE G D+IQTEG + PS GG+QG IE+AAPTLAA AI++AV IP MAASG+S +TAP+ALAAGA GVGVGSA+NKLNS+I MVA VR I AM
Sbjct: 36 CVSQGSVSPNLVLRPFQDKSALKIISGLKNFNSASVSQVVKAASAGGATHVDIACSAELVNLARSLTDLPICVSSVDPKEFVAAVEAGASMVEIGNYDGFYGEGRVFSAEEVLRLTRETRALLGDRIPLSVTVPHTLALDQQVSLAIELEAAGADIIQTEGGMPMKPSTGGLQGLIEKAAPTLAATAAIAKAVRIPTMAASGISYLTAPLALAAGAAGVGVGSAINKLNSDIAMVAAVREIKEAM 280
BLAST of mRNA_H-canaliculatus_F_contig1061.594.1 vs. uniprot
Match: UPI001882BC92 (DUF561 domain-containing protein n=1 Tax=Cyanobacterium stanieri TaxID=102235 RepID=UPI001882BC92) HSP 1 Score: 270 bits (689), Expect = 3.940e-80 Identity = 150/233 (64.38%), Postives = 180/233 (77.25%), Query Frame = 1 Query: 1546 KALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPELVRAAKAVSDVPVCVSAVDPELFPACVAAGAEMVELGNFDCFYDQGMTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDEQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISRAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAISSAMGLPKSSAV 2244
KALKVISGLN FD V V RAA GG T +DIA D E+++A K D+PVCVSAV+P+LF + V AGA+++E+GNFD FY QG+ FSAEDVL +TR+TRALLP LSVTVPHTL LDEQV+LA +LE G D+IQTEG S +P+ GI G IE+A+PTLAAAHAISRAV IPV+ ASGLSDVT PMA+A GA GVGVGSAVNKLN ++ M+AVVR++ A+ S AV
Sbjct: 14 KALKVISGLNNFDVANVVAVCRAAQLGGATFVDIAADVEIIKAVKESIDLPVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLSLTRQTRALLPHVLLSVTVPHTLPLDEQVELAQKLEAEGADIIQTEGGTSSNPNHSGILGLIEKASPTLAAAHAISRAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDQVAMIAVVRSLVEALNRSASQAV 246
BLAST of mRNA_H-canaliculatus_F_contig1061.594.1 vs. uniprot
Match: L1K0A3_GUITC (Uncharacterized protein ycf23 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K0A3_GUITC) HSP 1 Score: 270 bits (689), Expect = 4.070e-80 Identity = 152/239 (63.60%), Postives = 183/239 (76.57%), Query Frame = 1 Query: 1507 MSSGDVLAPFHAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPELVRAAKAVSDVPVCVSAVDPELFPACVAAGAEMVELGNFDCFYDQGMTFSAEDVLEMTRKTRALLPTT-PLSVTVPHTLDLDEQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISRAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAISSAM 2220
MS GDV+ PF +ALK+ISGLN FD V+ V RAA AGG T +DIACDP+LV+ A+++ +VPVCVS+V E F A V AGA MVE+GN+D FY QG FSAE+VL +T +TR +L ++ P+SVTVPHTL LDEQV LA+ LE G +IQTEG + PS GGIQG IE+AAPTLAA AIS+AV IP MAASG+S +TAP+A+AAGA GVGVGSAVNKLNSEI M+A VR I AM
Sbjct: 1 MSKGDVMLPFEQRRALKIISGLNNFDEKSVASVVRAANAGGATLVDIACDPKLVQLARSIGNVPVCVSSVVAEDFLAAVKAGANMVEIGNYDSFYAQGRKFSAEEVLAITERTRDILGSSIPVSVTVPHTLPLDEQVSLALALEAAGASIIQTEGGMPMKPSSGGIQGLIEKAAPTLAATAAISKAVEIPTMAASGISAITAPLAIAAGASGVGVGSAVNKLNSEIAMLAAVREIYEAM 239
BLAST of mRNA_H-canaliculatus_F_contig1061.594.1 vs. uniprot
Match: D8SUW3_SELML (Uncharacterized protein ycf23 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SUW3_SELML) HSP 1 Score: 271 bits (692), Expect = 8.600e-80 Identity = 150/244 (61.48%), Postives = 185/244 (75.82%), Query Frame = 1 Query: 1540 AGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPELVRAAKAVSDVPVCVSAVDPELFPACVAAGAEMVELGNFDCFYDQGMTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDEQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISRAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAISSAMGLPKSSAVEEPRSVEKA 2271
A +A KVI+GLN FD + V+ V AA GG TH+DIACDP+LV A ++ +P+CVSAVDPE F A V AGA M+E+GNFD FYD G FS+++VLE+TR+TR LLP LSVTVPHTL LDEQV LA LE G D+IQTEG + PSK GI G IE+A PTLAAA++ISRA+++PV+ ASGLS VTAPMA+ AGA GVG+GSAVNKLNS++ MVA VR+I+ AMGL S+ R+ +KA
Sbjct: 58 AKRAFKVIAGLNNFDRENVADVVVAAEKGGATHVDIACDPQLVELALGLTSLPICVSAVDPEAFVAAVDAGAHMIEIGNFDSFYDSGRVFSSKEVLELTRRTRELLPHITLSVTVPHTLPLDEQVQLAEALEEEGADIIQTEGGTASTPSKPGITGLIEKATPTLAAAYSISRAITLPVLCASGLSAVTAPMAITAGASGVGIGSAVNKLNSQLAMVATVRSIADAMGLEPSTEKIPERARDKA 301
BLAST of mRNA_H-canaliculatus_F_contig1061.594.1 vs. uniprot
Match: D8RYP1_SELML (Uncharacterized protein ycf23 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RYP1_SELML) HSP 1 Score: 270 bits (689), Expect = 2.310e-79 Identity = 149/244 (61.07%), Postives = 185/244 (75.82%), Query Frame = 1 Query: 1540 AGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPELVRAAKAVSDVPVCVSAVDPELFPACVAAGAEMVELGNFDCFYDQGMTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDEQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISRAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAISSAMGLPKSSAVEEPRSVEKA 2271
A +A KVI+GLN FD + V+ V AA GG TH+DIACDP++V A ++ +P+CVSAVDPE F A V AGA M+E+GNFD FYD G FS+++VLE+TR+TR LLP LSVTVPHTL LDEQV LA LE G D+IQTEG + PSK GI G IE+A PTLAAA++ISRA+++PV+ ASGLS VTAPMA+ AGA GVG+GSAVNKLNS++ MVA VR+I+ AMGL S+ R+ +KA
Sbjct: 58 AKRAFKVIAGLNNFDRENVADVVVAAEKGGATHVDIACDPQVVELALGLTSLPICVSAVDPEAFVAAVDAGAHMIEIGNFDSFYDSGRVFSSKEVLELTRRTRELLPHITLSVTVPHTLPLDEQVQLAEALEEEGADIIQTEGGTASTPSKPGITGLIEKATPTLAAAYSISRAITLPVLCASGLSAVTAPMAITAGASGVGIGSAVNKLNSQLAMVATVRSIADAMGLEPSTEKIPERARDKA 301
BLAST of mRNA_H-canaliculatus_F_contig1061.594.1 vs. uniprot
Match: A0A3M9ZCT6_9CYAN (DUF561 domain-containing protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A3M9ZCT6_9CYAN) HSP 1 Score: 264 bits (675), Expect = 3.990e-78 Identity = 146/231 (63.20%), Postives = 179/231 (77.49%), Query Frame = 1 Query: 1549 ALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPELVRAAKAVSDVPVCVSAVDPELFPACVAAGAEMVELGNFDCFYDQGMTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDEQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISRAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAISSAMGLPKSSA 2241
ALKVISGL FDA V+ V RAA GG T +DIA DP+LVR +K ++ +PVCVSAV+P+ F A VAAGA+++E+GNFD FY QG F A +VLE+TR+TRALLP LSVTVPH L+LD+QV LA EL G D+IQTEG S P+ G G IE+AAPTLAAAHAISRAVS+PV+ ASGLSDVTAPMA+AAGA G+GVGSA+N+LN E+ MVAVVR++ A+ + +A
Sbjct: 16 ALKVISGLTNFDAVRVAAVVRAADRGGATFVDIAADPDLVRLSKQLTQLPVCVSAVEPQQFVAAVAAGADLIEIGNFDAFYAQGKRFEAAEVLELTRQTRALLPNIMLSVTVPHILELDQQVQLAEELVQAGADLIQTEGGTSSQPTHAGTLGLIEKAAPTLAAAHAISRAVSVPVLCASGLSDVTAPMAIAAGAAGIGVGSAINRLNDELAMVAVVRSLVEALAISVKTA 246 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1061.594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1061.594.1 >prot_H-canaliculatus_F_contig1061.594.1 ID=prot_H-canaliculatus_F_contig1061.594.1|Name=mRNA_H-canaliculatus_F_contig1061.594.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=329bp MHELHPTHSRLLLNLHCYLPLTSCSYLPSVTAAAASIAIARKKSNIMRSTback to top mRNA from alignment at H-canaliculatus_F_contig1061:9528..15701- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1061.594.1 ID=mRNA_H-canaliculatus_F_contig1061.594.1|Name=mRNA_H-canaliculatus_F_contig1061.594.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6174bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1061:9528..15701- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1061:9528..15701- >mRNA_H-canaliculatus_F_contig1061.594.1 ID=mRNA_H-canaliculatus_F_contig1061.594.1|Name=mRNA_H-canaliculatus_F_contig1061.594.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1974bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1061:9528..15701- (Hapterophycus canaliculatus Oshoro5f female)back to top |