mRNA_H-canaliculatus_F_contig10552.533.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10552.533.1
Unique NamemRNA_H-canaliculatus_F_contig10552.533.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10552.533.1 vs. uniprot
Match: D7FU89_ECTSI (Phospholipid-transporting ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU89_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.130e-24
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    7 SEQGLTLIGGTAIEDKLQTGVGDTIEKMVRGGMVVWVITGDKEETAINIGVACQLI 174
            +E+ LTLIGGTAIEDKLQTGVG+TIEKMVRGGMVVWVITGDKEETAINIGVACQL+
Sbjct:  734 AERDLTLIGGTAIEDKLQTGVGETIEKMVRGGMVVWVITGDKEETAINIGVACQLL 789
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BLAST of mRNA_H-canaliculatus_F_contig10552.533.1 vs. uniprot
Match: UPI000462CB0F (phospholipid-transporting ATPase IK-like n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI000462CB0F)

HSP 1 Score: 80.5 bits (197), Expect = 1.210e-16
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   10 EQGLTLIGGTAIEDKLQTGVGDTIEKMVRGGMVVWVITGDKEETAINIGVACQLI 174
            E GL L+G TAIEDKLQ GV +TI+ + RGGM VWV+TGDK+ETA+NIG +CQL+
Sbjct:  168 EHGLQLLGATAIEDKLQDGVPETIDLLKRGGMKVWVLTGDKQETAVNIGFSCQLL 222
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BLAST of mRNA_H-canaliculatus_F_contig10552.533.1 vs. uniprot
Match: A0A8C2VGN6_CHILA (Phospholipid-transporting ATPase n=3 Tax=Chinchilla lanigera TaxID=34839 RepID=A0A8C2VGN6_CHILA)

HSP 1 Score: 80.5 bits (197), Expect = 2.760e-16
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   10 EQGLTLIGGTAIEDKLQTGVGDTIEKMVRGGMVVWVITGDKEETAINIGVACQLI 174
            EQGL L+G TAIEDKLQ GV DTI  + +G M VWV+TGDK+ETA+NIG ACQL+
Sbjct:  645 EQGLQLLGVTAIEDKLQDGVPDTISSLKKGNMKVWVLTGDKQETAVNIGFACQLL 699
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BLAST of mRNA_H-canaliculatus_F_contig10552.533.1 vs. uniprot
Match: A0A6P6EKT3_OCTDE (Phospholipid-transporting ATPase n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P6EKT3_OCTDE)

HSP 1 Score: 80.5 bits (197), Expect = 2.760e-16
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   10 EQGLTLIGGTAIEDKLQTGVGDTIEKMVRGGMVVWVITGDKEETAINIGVACQLI 174
            EQGL L+G TAIEDKLQ GV DTI  + +G M VWV+TGDK+ETA+NIG ACQL+
Sbjct:  645 EQGLQLLGVTAIEDKLQDGVPDTISSLKKGNMKVWVLTGDKQETAVNIGFACQLL 699
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BLAST of mRNA_H-canaliculatus_F_contig10552.533.1 vs. uniprot
Match: A0A1Y2WHL1_9PEZI (Phospholipid-transporting ATPase n=1 Tax=Hypoxylon sp. CI-4A TaxID=1001833 RepID=A0A1Y2WHL1_9PEZI)

HSP 1 Score: 80.5 bits (197), Expect = 2.760e-16
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 DISEQGLTLIGGTAIEDKLQTGVGDTIEKMVRGGMVVWVITGDKEETAINIGVACQLI 174
            D  EQGLTL+GGTAIED+LQ GV DTIE + R G+ +WV+TGDK ETAINIG +C L+
Sbjct:  903 DKIEQGLTLLGGTAIEDRLQDGVPDTIELLGRAGIKLWVLTGDKVETAINIGFSCNLL 960
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BLAST of mRNA_H-canaliculatus_F_contig10552.533.1 vs. uniprot
Match: A0A183JK29_9TREM (Uncharacterized protein n=2 Tax=Schistosoma TaxID=6181 RepID=A0A183JK29_9TREM)

HSP 1 Score: 77.0 bits (188), Expect = 4.460e-16
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   10 EQGLTLIGGTAIEDKLQTGVGDTIEKMVRGGMVVWVITGDKEETAINIGVACQLI 174
            EQ L L+G TAIED+LQTGV  TI  ++R G+ +WV+TGDK+ETAINIG +CQL+
Sbjct:   86 EQNLQLLGATAIEDRLQTGVPHTIANLMRAGISIWVLTGDKQETAINIGYSCQLL 140
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BLAST of mRNA_H-canaliculatus_F_contig10552.533.1 vs. uniprot
Match: A0A836CFX1_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 5.130e-16
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 DISEQGLTLIGGTAIEDKLQTGVGDTIEKMVRGGMVVWVITGDKEETAINIGVACQLI 174
            D+ E GL L+G TAIEDKLQ GV   I  ++  G+ VWV+TGDKEETAINIGVACQLI
Sbjct:  764 DVIEMGLELLGSTAIEDKLQEGVPGAIASIMAAGIKVWVLTGDKEETAINIGVACQLI 821
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BLAST of mRNA_H-canaliculatus_F_contig10552.533.1 vs. uniprot
Match: A0A1J4KCY1_9EUKA (Phospholipid-transporting ATPase n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KCY1_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 7.020e-16
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:   19 LTLIGGTAIEDKLQTGVGDTIEKMVRGGMVVWVITGDKEETAINIGVACQLI 174
            LTLIG TAIEDKLQ GV DTIE ++R G+ +WVITGDK ETAINIG AC L+
Sbjct:  635 LTLIGATAIEDKLQIGVPDTIESLLRAGINIWVITGDKRETAINIGFACSLL 686
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BLAST of mRNA_H-canaliculatus_F_contig10552.533.1 vs. uniprot
Match: UPI001378F46A (phospholipid-transporting ATPase IK n=1 Tax=Thamnophis elegans TaxID=35005 RepID=UPI001378F46A)

HSP 1 Score: 79.3 bits (194), Expect = 7.020e-16
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   10 EQGLTLIGGTAIEDKLQTGVGDTIEKMVRGGMVVWVITGDKEETAINIGVACQLI 174
            EQ L L+G TAIEDKLQ GV +TI  + RGG+ VWV+TGDK+ETA+NIG ACQL+
Sbjct:  738 EQNLKLLGATAIEDKLQNGVPETIHLLKRGGIKVWVLTGDKQETAVNIGFACQLL 792
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BLAST of mRNA_H-canaliculatus_F_contig10552.533.1 vs. uniprot
Match: A0A2T2ZVH6_9PEZI (Phospholipid-transporting ATPase n=1 Tax=Coniella lustricola TaxID=2025994 RepID=A0A2T2ZVH6_9PEZI)

HSP 1 Score: 79.3 bits (194), Expect = 7.030e-16
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 DISEQGLTLIGGTAIEDKLQTGVGDTIEKMVRGGMVVWVITGDKEETAINIGVACQLI 174
            D+ EQ LTL+GGTAIED+LQ GV DTI  +  GG+ +WV+TGDK ETAINIG +C L+
Sbjct:  906 DVIEQDLTLLGGTAIEDRLQEGVPDTIALLAEGGIKLWVLTGDKVETAINIGFSCNLL 963
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10552.533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU89_ECTSI1.130e-2491.07Phospholipid-transporting ATPase n=1 Tax=Ectocarpu... [more]
UPI000462CB0F1.210e-1667.27phospholipid-transporting ATPase IK-like n=1 Tax=A... [more]
A0A8C2VGN6_CHILA2.760e-1669.09Phospholipid-transporting ATPase n=3 Tax=Chinchill... [more]
A0A6P6EKT3_OCTDE2.760e-1669.09Phospholipid-transporting ATPase n=1 Tax=Octodon d... [more]
A0A1Y2WHL1_9PEZI2.760e-1667.24Phospholipid-transporting ATPase n=1 Tax=Hypoxylon... [more]
A0A183JK29_9TREM4.460e-1663.64Uncharacterized protein n=2 Tax=Schistosoma TaxID=... [more]
A0A836CFX1_9STRA5.130e-1667.24Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
A0A1J4KCY1_9EUKA7.020e-1673.08Phospholipid-transporting ATPase n=1 Tax=Tritricho... [more]
UPI001378F46A7.020e-1667.27phospholipid-transporting ATPase IK n=1 Tax=Thamno... [more]
A0A2T2ZVH6_9PEZI7.030e-1663.79Phospholipid-transporting ATPase n=1 Tax=Coniella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10552contigH-canaliculatus_F_contig10552:1340..1513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7FU89
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928708.0197473-CDS-H-canaliculatus_F_contig10552:1339..15131622928708.0197473-CDS-H-canaliculatus_F_contig10552:1339..1513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10552 1340..1513 -
1696845532.9808276-CDS-H-canaliculatus_F_contig10552:1339..15131696845532.9808276-CDS-H-canaliculatus_F_contig10552:1339..1513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10552 1340..1513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10552.533.1prot_H-canaliculatus_F_contig10552.533.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10552 1340..1513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10552.533.1

>prot_H-canaliculatus_F_contig10552.533.1 ID=prot_H-canaliculatus_F_contig10552.533.1|Name=mRNA_H-canaliculatus_F_contig10552.533.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
DISEQGLTLIGGTAIEDKLQTGVGDTIEKMVRGGMVVWVITGDKEETAIN
IGVACQLI
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mRNA from alignment at H-canaliculatus_F_contig10552:1340..1513-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10552.533.1 ID=mRNA_H-canaliculatus_F_contig10552.533.1|Name=mRNA_H-canaliculatus_F_contig10552.533.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=174bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10552:1340..1513- (Hapterophycus canaliculatus Oshoro5f female)
GACATCTCCGAGCAGGGCCTCACCCTGATCGGCGGCACGGCCATCGAGGA
CAAGCTGCAGACGGGGGTTGGGGATACGATCGAGAAGATGGTGAGAGGGG
GCATGGTGGTGTGGGTCATCACGGGGGACAAAGAGGAGACCGCCATCAAC
ATCGGAGTGGCGTGCCAGCTGATC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10552:1340..1513-

>mRNA_H-canaliculatus_F_contig10552.533.1 ID=mRNA_H-canaliculatus_F_contig10552.533.1|Name=mRNA_H-canaliculatus_F_contig10552.533.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10552:1340..1513- (Hapterophycus canaliculatus Oshoro5f female)
GACATCTCCGAGCAGGGCCTCACCCTGATCGGCGGCACGGCCATCGAGGA
CAAGCTGCAGACGGGGGTTGGGGATACGATCGAGAAGATGGTGAGAGGGG
GCATGGTGGTGTGGGTCATCACGGGGGACAAAGAGGAGACCGCCATCAAC
ATCGGAGTGGCGTGCCAGCTGATCGACATCTCCGAGCAGGGCCTCACCCT
GATCGGCGGCACGGCCATCGAGGACAAGCTGCAGACGGGGGTTGGGGATA
CGATCGAGAAGATGGTGAGAGGGGGCATGGTGGTGTGGGTCATCACGGGG
GACAAAGAGGAGACCGCCATCAACATCGGAGTGGCGTGCCAGCTGATC
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