mRNA_H-canaliculatus_F_contig10547.527.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10547.527.1
Unique NamemRNA_H-canaliculatus_F_contig10547.527.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10547.527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10547contigH-canaliculatus_F_contig10547:1474..2313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size261
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10547.527.1prot_H-canaliculatus_F_contig10547.527.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10547 1476..2313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928706.9228501-CDS-H-canaliculatus_F_contig10547:1475..15111622928706.9228501-CDS-H-canaliculatus_F_contig10547:1475..1511Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10547 1476..1511 -
1696845532.3956122-CDS-H-canaliculatus_F_contig10547:1475..15111696845532.3956122-CDS-H-canaliculatus_F_contig10547:1475..1511Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10547 1476..1511 -
1622928706.9354713-CDS-H-canaliculatus_F_contig10547:1822..19071622928706.9354713-CDS-H-canaliculatus_F_contig10547:1822..1907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10547 1823..1907 -
1696845532.4049418-CDS-H-canaliculatus_F_contig10547:1822..19071696845532.4049418-CDS-H-canaliculatus_F_contig10547:1822..1907Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10547 1823..1907 -
1622928706.9471867-CDS-H-canaliculatus_F_contig10547:2176..23131622928706.9471867-CDS-H-canaliculatus_F_contig10547:2176..2313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10547 2177..2313 -
1696845532.4149623-CDS-H-canaliculatus_F_contig10547:2176..23131696845532.4149623-CDS-H-canaliculatus_F_contig10547:2176..2313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10547 2177..2313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10547.527.1

>prot_H-canaliculatus_F_contig10547.527.1 ID=prot_H-canaliculatus_F_contig10547.527.1|Name=mRNA_H-canaliculatus_F_contig10547.527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=86bp
RLLPRHTEALACVSPQRQRERRGQLQCSAHTTVAAGTVASGSGSCSSPWV
LGRSQKRYEEDGESQPLSARKASECEGKTATAGRRR
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mRNA from alignment at H-canaliculatus_F_contig10547:1474..2313-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10547.527.1 ID=mRNA_H-canaliculatus_F_contig10547.527.1|Name=mRNA_H-canaliculatus_F_contig10547.527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10547:1474..2313- (Hapterophycus canaliculatus Oshoro5f female)
CGTCTTTTGCCACGACATACAGAGGCGCTTGCCTGTGTGTCCCCGCAGCG
ACAGAGAGAAAGGCGTGGCCAGCTGCAATGCTCGGCACATACTACTGTGG
CAGCAGGGACCGTAGCGTCTGGGAGTGGAAGCTGTTCGTGAGAGCGGGAT
GGGAATGGCACGATCCTGGCACGACGTGTAGATCAAAAGCCTGATTGCTG
CTGTAGACTACTCGTATTGGATTTTGAAAGATGCGTGAGAGGAGGGCAGC
GACAATGAGCCGCGAGCCGCGTGGCATACGCACACTGGAGCCTGCCACAA
CACAAGTAAGCAAGCAGCAGGATCAAAGGCGGGGTGAGACGCTCACCTCA
GTCGCCCTAGCCCCGAGCAGTGTCCGGCGCCGCTTCCGTTGTTGTGGTGT
GTTCAGATCTCCGTGGGTCCTGGGAAGGAGCCAAAAGAGATATGAGGAGG
ATGGAGAAAGCCAGCCGCTCTCTGCCAGGAAGGCATCCGAGGTGAGTGAG
ACCAACAAGCGTTCCAGAGCATAGGGTACGGTCCTTGTGGACAGCGGCAG
CTCGAGCTTGTACTTTTCAAGCACCTGTGCGTTTCTGCAGGCTGCAGCAG
GGGTGTTCGTTGTGGAGATGTTTGGGCGCGTGATCCTTCGCGGCAAGATA
CCCCCCACCCCCCCGAACTCTCGTGTATTTGTGCTTGCCCGGTACTGTCC
CCCTCCTCTCGTAACCCCTCGCACAACCGCCTCTCACCAACCCCGGCCCT
CGCACAAACCCTCAAACGCCTTTCTCTCTCGCGCGCTGTGTCGCTCCATC
AGTGCGAAGGAAAGACTGCGACCGCCGGCCGTAGACGAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10547:1474..2313-

>mRNA_H-canaliculatus_F_contig10547.527.1 ID=mRNA_H-canaliculatus_F_contig10547.527.1|Name=mRNA_H-canaliculatus_F_contig10547.527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=516bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10547:1474..2313- (Hapterophycus canaliculatus Oshoro5f female)
CGTCTTTTGCCACGACATACAGAGGCGCTTGCCTGTGTGTCCCCGCAGCG
ACAGAGAGAAAGGCGTGGCCAGCTGCAATGCTCGGCACATACTACTGTGG
CAGCAGGGACCGTAGCGTCTGGGAGTGGAAGCTGTTCCGTCTTTTGCCAC
GACATACAGAGGCGCTTGCCTGTGTGTCCCCGCAGCGACAGAGAGAAAGG
CGTGGCCAGCTGCAATGCTCGGCACATACTACTGTGGCAGCAGGGACCGT
AGCGTCTGGGAGTGGAAGCTGTTCATCTCCGTGGGTCCTGGGAAGGAGCC
AAAAGAGATATGAGGAGGATGGAGAAAGCCAGCCGCTCTCTGCCAGGAAG
GCATCCGAGATCTCCGTGGGTCCTGGGAAGGAGCCAAAAGAGATATGAGG
AGGATGGAGAAAGCCAGCCGCTCTCTGCCAGGAAGGCATCCGAGTGCGAA
GGAAAGACTGCGACCGCCGGCCGTAGACGATGCGAAGGAAAGACTGCGAC
CGCCGGCCGTAGACGA
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