mRNA_H-canaliculatus_F_contig10543.525.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10543.525.1
Unique NamemRNA_H-canaliculatus_F_contig10543.525.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10543.525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10543contigH-canaliculatus_F_contig10543:318..595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size187
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10543.525.1prot_H-canaliculatus_F_contig10543.525.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10543 318..578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928706.802939-CDS-H-canaliculatus_F_contig10543:317..4041622928706.802939-CDS-H-canaliculatus_F_contig10543:317..404Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10543 318..404 -
1696845532.3286736-CDS-H-canaliculatus_F_contig10543:317..4041696845532.3286736-CDS-H-canaliculatus_F_contig10543:317..404Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10543 318..404 -
1622928706.8172743-CDS-H-canaliculatus_F_contig10543:497..5781622928706.8172743-CDS-H-canaliculatus_F_contig10543:497..578Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10543 498..578 -
1696845532.336996-CDS-H-canaliculatus_F_contig10543:497..5781696845532.336996-CDS-H-canaliculatus_F_contig10543:497..578Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10543 498..578 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928706.8315492-UTR-H-canaliculatus_F_contig10543:578..5951622928706.8315492-UTR-H-canaliculatus_F_contig10543:578..595Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10543 579..595 -
1696845532.3452978-UTR-H-canaliculatus_F_contig10543:578..5951696845532.3452978-UTR-H-canaliculatus_F_contig10543:578..595Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10543 579..595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10543.525.1

>prot_H-canaliculatus_F_contig10543.525.1 ID=prot_H-canaliculatus_F_contig10543.525.1|Name=mRNA_H-canaliculatus_F_contig10543.525.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=56bp
MLRRTKWQERVESLRVWHTLLSKTSGMRLEREWNELRQGDNEDVMDYLRR
GQTIQM
back to top

mRNA from alignment at H-canaliculatus_F_contig10543:318..595-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10543.525.1 ID=mRNA_H-canaliculatus_F_contig10543.525.1|Name=mRNA_H-canaliculatus_F_contig10543.525.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=278bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10543:318..595- (Hapterophycus canaliculatus Oshoro5f female)
CGGACATTGATTTTGACATGCTCAGAAGAACTAAATGGCAAGAACGAGTT
GAGTCATTGCGTGTCTGGCATACACTTCTTTCTAAAACCTCTGGAATGGT
GCAAGATGTGATCCTCTCGACTGGTAGTCCTCAGCAAGGATGGAGGGCCT
TCGTCTCCCAGCACAGAGAAAACTTTGACAGGGAAGGAGAGCGATTAGAG
AGAGAGTGGAATGAGTTAAGGCAGGGAGATAACGAGGATGTGATGGATTA
CCTCCGGAGGGGGCAAACTATTCAAATG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10543:318..595-

>mRNA_H-canaliculatus_F_contig10543.525.1 ID=mRNA_H-canaliculatus_F_contig10543.525.1|Name=mRNA_H-canaliculatus_F_contig10543.525.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10543:318..595- (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCAGAAGAACTAAATGGCAAGAACGAGTTGAGTCATTGCGTGTCTG
GCATACACTTCTTTCTAAAACCTCTGGAATGATGCTCAGAAGAACTAAAT
GGCAAGAACGAGTTGAGTCATTGCGTGTCTGGCATACACTTCTTTCTAAA
ACCTCTGGAATGCGATTAGAGAGAGAGTGGAATGAGTTAAGGCAGGGAGA
TAACGAGGATGTGATGGATTACCTCCGGAGGGGGCAAACTATTCAAATGC
GATTAGAGAGAGAGTGGAATGAGTTAAGGCAGGGAGATAACGAGGATGTG
ATGGATTACCTCCGGAGGGGGCAAACTATTCAAATG
back to top