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Homology
BLAST of mRNA_H-canaliculatus_F_contig10536.518.1 vs. uniprot
Match: D8LI76_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI76_ECTSI) HSP 1 Score: 347 bits (891), Expect = 8.460e-108 Identity = 209/281 (74.38%), Postives = 238/281 (84.70%), Query Frame = 1
Query: 1 PQPNS---RSVEPMPDLSEEDEDELASHRFASEASRITANVLARAIRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHVAVRRSKLAWSFCKLMRGRPEVGIDPELETPVYFCSIICNRRPGYLYLTYWHICVVTKVPGFAASVWVMNLQDVDAIEIVKLFVGHGIQVRKSSQGA----GEDGSAALSPAPLSRGPSFSSRPXXXXXXXXXXXXXXXXXXXXXAEKVRPSSITFATTKVATAELRELMVALVRVHREPVTSPTTAERAAA 822
P+PN SV+PMPDL EED EL+SHRF SEASR+ ANVLAR IRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGH+AVRRS++ +F ++M+ RPE GIDP +E PVYFCSIICNRRPGYLYLTYWH+CVVTKVPGFA++V VMNL+D+DA+EIVKLFVG+GIQVRK +GA GE+ +SP P XXXXXXXXXXXXXXXXXXXXXA++VRP+++TFAT KVATAELREL+VALVRVHREPVTSP+ AERAAA
Sbjct: 825 PRPNDILPSSVDPMPDLCEEDRGELSSHRFCSEASRVMANVLARCIRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHMAVRRSRMTAAFSRVMQSRPEAGIDPNVEAPVYFCSIICNRRPGYLYLTYWHVCVVTKVPGFASTVTVMNLEDIDAVEIVKLFVGYGIQVRKGLRGAAAAAGEE--PTVSPFPPXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXAKRVRPATMTFATAKVATAELRELIVALVRVHREPVTSPSAAERAAA 1102
BLAST of mRNA_H-canaliculatus_F_contig10536.518.1 vs. uniprot
Match: A0A836CAL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL5_9STRA) HSP 1 Score: 113 bits (283), Expect = 2.470e-24 Identity = 57/154 (37.01%), Postives = 91/154 (59.09%), Query Frame = 1
Query: 61 ELASHRFASEASRITANVLARAIRYTEKCDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHVAVRRSKLAWSFCK-LMRGRPEVGIDPELETPVYFCSIICNRRPGYLYLTYWHICVVTKVPGFAASVWVMNLQDVDAIEIVKLFVGHG 519
EL+ H F +EA R+ A VLAR Y +CDE+M+ + N Q + R+ ++Y EL QALRD H + + F + ++ E +DP++E P++FCS++ PG +YLTYWH+C+VT + GF +V + L+ V +E +++ G G
Sbjct: 560 ELSRHVFKNEADRVLAFVLARWRSYVGQCDEEMSRAVDTLNHQALDRLLELRMYLCELMQALRDEHASAAAECITKPFHRAIVASGIETSVDPDVEGPIFFCSVLAGSWPGTMYLTYWHLCLVTSLTGFRPNVVEIPLRHVSQVEAHRMWWGRG 713
BLAST of mRNA_H-canaliculatus_F_contig10536.518.1 vs. uniprot
Match: W7TN29_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TN29_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 8.410e-9 Identity = 43/109 (39.45%), Postives = 57/109 (52.29%), Query Frame = 1
Query: 145 CDEQMTARMQRKNRQVMQRISRSQLYQRELFQALRDGHVAVRRSKLAWSFCKLMRGRPEVGIDPELETPVYFCSIICNRRPGYLYLTYWHICVVTKVPGFAASVWVMNL 471
CD +MTA MQRKN Q++ R+ R YQ L + LRD L +F + V D E+ETP+Y+C I RP L++T+ I V+KV GF VW L
Sbjct: 275 CDAEMTACMQRKNLQIVDRMGRCNEYQLFLLETLRDNPFRT-TVPLFHNFKYQIGHDGGVFEDEEVETPLYYCRCIVGSRPATLFITFTQITFVSKVCGF---VWARRL 379
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 924 |
| Cds size | 894 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928705.672835-UTR-H-canaliculatus_F_contig10536:1152..1182 | 1622928705.672835-UTR-H-canaliculatus_F_contig10536:1152..1182 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10536 1153..1182 + |
| 1696845531.9229748-UTR-H-canaliculatus_F_contig10536:1152..1182 | 1696845531.9229748-UTR-H-canaliculatus_F_contig10536:1152..1182 | Hapterophycus canaliculatus Oshoro5f female | UTR | H-canaliculatus_F_contig10536 1153..1182 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622928705.68298-CDS-H-canaliculatus_F_contig10536:1182..1341 | 1622928705.68298-CDS-H-canaliculatus_F_contig10536:1182..1341 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10536 1183..1341 + |
| 1696845531.932475-CDS-H-canaliculatus_F_contig10536:1182..1341 | 1696845531.932475-CDS-H-canaliculatus_F_contig10536:1182..1341 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10536 1183..1341 + |
| 1622928705.697279-CDS-H-canaliculatus_F_contig10536:2122..2197 | 1622928705.697279-CDS-H-canaliculatus_F_contig10536:2122..2197 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10536 2123..2197 + |
| 1696845531.9416986-CDS-H-canaliculatus_F_contig10536:2122..2197 | 1696845531.9416986-CDS-H-canaliculatus_F_contig10536:2122..2197 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10536 2123..2197 + |
| 1622928705.712565-CDS-H-canaliculatus_F_contig10536:2814..2954 | 1622928705.712565-CDS-H-canaliculatus_F_contig10536:2814..2954 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10536 2815..2954 + |
| 1696845531.951223-CDS-H-canaliculatus_F_contig10536:2814..2954 | 1696845531.951223-CDS-H-canaliculatus_F_contig10536:2814..2954 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10536 2815..2954 + |
| 1622928705.7246091-CDS-H-canaliculatus_F_contig10536:3884..4005 | 1622928705.7246091-CDS-H-canaliculatus_F_contig10536:3884..4005 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10536 3885..4005 + |
| 1696845531.9610548-CDS-H-canaliculatus_F_contig10536:3884..4005 | 1696845531.9610548-CDS-H-canaliculatus_F_contig10536:3884..4005 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10536 3885..4005 + |
| 1622928705.7484374-CDS-H-canaliculatus_F_contig10536:4300..4699 | 1622928705.7484374-CDS-H-canaliculatus_F_contig10536:4300..4699 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10536 4301..4699 + |
| 1696845531.9717364-CDS-H-canaliculatus_F_contig10536:4300..4699 | 1696845531.9717364-CDS-H-canaliculatus_F_contig10536:4300..4699 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig10536 4301..4699 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig10536.518.1 >prot_H-canaliculatus_F_contig10536.518.1 ID=prot_H-canaliculatus_F_contig10536.518.1|Name=mRNA_H-canaliculatus_F_contig10536.518.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=298bp
MPDLSEEDEDELASHRFASEASRITANVLARAIRYTEKCDEQMTARMQRK NRQVMQRISRSQLYQRELFQALRDGHVAVRRSKLAWSFCKLMRGRPEVGI DPELETPVYFCSIICNRRPGYLYLTYWHICVVTKVPGFAASVWVMNLQDV DAIEIVKLFVGHGIQVRKSSQGAGEDGSAALSPAPLSRGPSFSSRPPPPR RRDAQRDAAATAATAAAAEKVRPSSITFATTKVATAELRELMVALVRVHR EPVTSPTTAERAAARAEAEAAAARASSSSSLSPSPSPSPSPSSPTGL* back to topmRNA from alignment at H-canaliculatus_F_contig10536:1153..4699+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig10536.518.1 ID=mRNA_H-canaliculatus_F_contig10536.518.1|Name=mRNA_H-canaliculatus_F_contig10536.518.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3547bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10536:1153..4699+ (Hapterophycus canaliculatus Oshoro5f female) CCGCAACCGAACTCACGCAGCGTGGAGCCCATGCCGGATCTGTCGGAGGA
GGACGAGGACGAGCTGGCGTCCCACCGCTTCGCCTCCGAGGCGAGTAGGA
TCACGGCCAACGTCCTAGCGCGGGCCATCCGGTACACGGAGAAGTGCGAC
GAGCAGATGACGGCTCGCATGCAGCGCAAGAACCGGCAGGTGGGTGGAGG
TGGTGACGTCGTCCCGTCAAGAAGTGACACGTGAATCGGGGTTTCGCTGC
GTGTCGGCGTTGAGTTTTTCGTTTGGGTGGTTCGATCTGGTGTTTGGATG
GTGGGCTGTGTGTGCGCCGAGGTTTGGGCGTGTGTTTTCGTTCAGGGGTC
GACGCCCCCCGGGGGGGCGCGGGGGGGGTCTGTGCGTGGCGGAATTGTTG
GAAGCACGGACGAATTCGTGGGAAGTAGGCGAAGGCGCGCACGCGTTGGC
GCTCAAGAACCGACGACGCCTGTGGTACGGGCGGGCGGGCACTCTCGATG
AGGCGGAAGTGCGTCCATTTTTTCATGTTTTCGGCCGTTCAAGTTTTTTT
TTTTTATGCGAGTGAATCGCTGCTGTTGCAGGCCCTCCTCCCGAAGAAGC
CCGCGGAGAGCCGTTTTTGCCGGATGGCTGCTTTTCAAGCTAGATGAGTG
GGGCGAGTTTCACAGATGACCTCTTCGACGGGGGACACGCTTCTGCAGCT
CCGTTGGAACGGGTTTTCGCAGCAGATCATCTCCTGCCTGGACGGCATGC
CAACGGAGCCCGATCGAAACGAGTGCTGCTTGCTTTTTGCGCAAGGGATG
AAGCTGTTAAGCTGGATCGCATGAAGCATCACGAATTCGTTCGAGTACAA
AAAAAAAGCTAGCTTAGCGCTGCTGCTATTGCTGCTGAAGATGATGGCTT
TCGCTATCCGCGCCCCGTTCCGTGTTCCCTGGTTTGCTTCGCTTTGTGCC
TGTGTGGCCTACACGCTCAGGTCATGCAACGGATATCGCGGTCGCAGCTG
TACCAGCGGGAGCTCTTCCAGGCTCTTCGCGACGGCCACGTGGCGGTGAG
ATCAATCGTTTCCCGCTCTGGCGGTTTGTTGAGCCTTTTTTTTTTTTCTT
AAACAGCCTTTTTTTTTCGTTGGTCTTGTGTGCACCGTCTCGTTCCGTTC
CGCTCTCCTCTCGTTTCCGTCACGTGCTTTGGCGACACCTTTGCGCCCAA
CGGAAGGGCGTGTGACCTGATGATGGACGGGTGCGCGACGGCAGCGGTCG
CGGATCGGCGACCCTCGCTCCGAGCAAAGAACAAGCCTGTGCTGCTACCT
TCAGTAGTAATAGTAGCTTTCACTACGAACAAGCGCATTTGCCCTTTGGC
ATGCTCAAGAATCGACCGACCCTCCACCCAACGCTGCCCGGCTCTGTCTC
TGTTTCTCTTTCTCTCTCTCTCTCTCGGTCTCCCGCCTCTCCGCGTAGGG
GTCCCTGTGATACGTCACGAGAACCGAATCAAATGCGACTCTTGCACTCT
CATTCGACGGACGTGCGCCCTTGATTGCTCGACCGCTTCGTGGTCGGGCT
GAAGCTTGGATAATGTCCGTTGTCGATTGATGCCATCTGTCCTTCGGGCA
TCGCCACCCACACCCACCCACCGCCGGTTGACGGATGCATCGATTGGGTG
ATTGGTCGGCAGGTCCGGAGGTCGAAGCTGGCGTGGAGCTTCTGCAAGCT
GATGCGGGGCCGGCCGGAGGTCGGGATCGACCCGGAGCTAGAGACGCCTG
TGTACTTCTGCTCCATCATCTGCAACCGTCGACCGGGCTACTTGTACCTC
ACGTGAGCGGTCGTGTTGATGCTGTCGGTTGATGCGCCCTTCGCGGCCGT
CATGGCAAATGGTCACGGCGCTGTTGCGATTATGTTGTGCTGTGGTCGTT
GGTGGTCGTGGATGGTGAGCGATTGTGATGACGACGATGGACGGACGGTT
AGGAGTTGTGAGAGAAAATGCCCAGCCAGCGAGATCTATCTCGGTTCGGA
GAGGGTGCCATGGCGAGGATGCGTTGAAGGTGTTTCTTGTTGTTAATCAC
GGCATTCGTGCGTCGGTCGCTAATCCATCTCAATCGTTCGAACGGGGTGA
CGGGGAAGGCGGTATTTTTTGTCCCCCTTGCCTATCCTGTGCCCGTGAAC
CTTGTTTTTCTGTTGGCCCTCTCTGTACGCCTTCACTGAGAGCGGAGAGT
CTCCTGTTTCTCTTTCTTACCACCTATTTTTGTGATCGACGGTGTGGTTT
CGGATACGCTTTTTTCCCGTCTGCCTGGCCCAGAGTCAAGTCGTCGTGTT
TGCAAGGGGGCGTGTGTCCGTCGAGGCCCTGTTTTTTAAAGAAAACATAA
CAACACCGTTAGAACACCTCCTGAGGTACGTCCTGTGAGGCGTACCCCAA
GGCCCCTGTTTTATTCCGCAATTGCCCGCCCCTCTGGCGTGTATCCATGC
TTCCCTTTGTCCTCGACCTCCCAGGACCACTCGTTTCATGCGTTTCGAAG
ACTATCGAAGACTAGGTGAATGAGCCCACCCCGCCACCATCTCGGGCCCT
CCAGCGATGCGAGACACCCGCTTAGAACCGTCGCTGTATTTTGCTCTTGC
CCCGGTCCGATCCCGCTCGCTGGCAACGTCGTCACGCTGTGGAGCCTACT
CTACGCCTTGGTGCACCGTATCCGCCTGCTCTGACATCGTGCCCGATTTC
TCCCTTTACGCGACCGACACGACCGATGCCAGGTACTGGCATATCTGCGT
GGTTACTAAGGTACCCGGTTTTGCGGCCTCCGTCTGGGTGATGAATTTGC
AAGACGTCGACGCCATCGAGATCGTCAAACTTTTCGTCGGGCATGGGATC
CAGGTAAGAACGAGATAGACAGGGGTGCGGGGGGGCGGGTGGATGGGAAG
CTCGGGGAGAGGGGGGCACAGAGATGGCAGCAGAAGAGAGACGAGGGAGG
CGTGGCTTTCCACCTGGTGCCCTCATTTCCTAATTTTTAGGAAATGATGC
TGGTCGGACTTCTTTCCTCAGGCACCCTCCCCGTTGCTCGCCGGCCTGCC
CACATCCAGCCTCAGAGCACCCGTCAAGGTCAAGCAACCAGCCGGCCGAT
TCACCGCTCCCCCCACTCACCCACCCACCGCGCGCCGCAAAAAAACAGGT
CCGAAAGAGCTCCCAAGGTGCGGGAGAGGATGGCTCAGCCGCCCTCTCTC
CGGCGCCGCTCTCGCGGGGGCCCTCGTTCTCGTCGCGCCCGCCTCCGCCA
CGCCGCCGCGACGCCCAGAGGGACGCGGCGGCGACGGCGGCGACGGCGGC
GGCCGCAGAAAAGGTGCGGCCATCGAGCATCACGTTCGCCACCACCAAGG
TGGCGACGGCGGAGCTCCGTGAGCTGATGGTGGCCCTGGTCCGCGTTCAC
CGGGAGCCCGTGACGTCCCCGACCACCGCCGAGAGGGCCGCGGCGAGGGC
GGAGGCCGAGGCGGCGGCCGCGCGTGCGTCCTCGTCGTCGTCGCTGTCGC
CGTCCCCGTCCCCTTCCCCGTCCCCATCATCGCCCACGGGGTTGTGA back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig10536:1153..4699+ >mRNA_H-canaliculatus_F_contig10536.518.1 ID=mRNA_H-canaliculatus_F_contig10536.518.1|Name=mRNA_H-canaliculatus_F_contig10536.518.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1788bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10536:1153..4699+ (Hapterophycus canaliculatus Oshoro5f female) ATGCCGGATCTGTCGGAGGAGGACGAGGACGAGCTGGCGTCCCACCGCTT CGCCTCCGAGGCGAGTAGGATCACGGCCAACGTCCTAGCGCGGGCCATCC GGTACACGGAGAAGTGCGACGAGCAGATGACGGCTCGCATGCAGCGCAAG AACCGGCAGATGCCGGATCTGTCGGAGGAGGACGAGGACGAGCTGGCGTC CCACCGCTTCGCCTCCGAGGCGAGTAGGATCACGGCCAACGTCCTAGCGC GGGCCATCCGGTACACGGAGAAGTGCGACGAGCAGATGACGGCTCGCATG CAGCGCAAGAACCGGCAGGTCATGCAACGGATATCGCGGTCGCAGCTGTA CCAGCGGGAGCTCTTCCAGGCTCTTCGCGACGGCCACGTGGCGGTCATGC AACGGATATCGCGGTCGCAGCTGTACCAGCGGGAGCTCTTCCAGGCTCTT CGCGACGGCCACGTGGCGGTCCGGAGGTCGAAGCTGGCGTGGAGCTTCTG CAAGCTGATGCGGGGCCGGCCGGAGGTCGGGATCGACCCGGAGCTAGAGA CGCCTGTGTACTTCTGCTCCATCATCTGCAACCGTCGACCGGGCTACTTG TACCTCACGTCCGGAGGTCGAAGCTGGCGTGGAGCTTCTGCAAGCTGATG CGGGGCCGGCCGGAGGTCGGGATCGACCCGGAGCTAGAGACGCCTGTGTA CTTCTGCTCCATCATCTGCAACCGTCGACCGGGCTACTTGTACCTCACGT ACTGGCATATCTGCGTGGTTACTAAGGTACCCGGTTTTGCGGCCTCCGTC TGGGTGATGAATTTGCAAGACGTCGACGCCATCGAGATCGTCAAACTTTT CGTCGGGCATGGGATCCAGGTACTGGCATATCTGCGTGGTTACTAAGGTA CCCGGTTTTGCGGCCTCCGTCTGGGTGATGAATTTGCAAGACGTCGACGC CATCGAGATCGTCAAACTTTTCGTCGGGCATGGGATCCAGGTCCGAAAGA GCTCCCAAGGTGCGGGAGAGGATGGCTCAGCCGCCCTCTCTCCGGCGCCG CTCTCGCGGGGGCCCTCGTTCTCGTCGCGCCCGCCTCCGCCACGCCGCCG CGACGCCCAGAGGGACGCGGCGGCGACGGCGGCGACGGCGGCGGCCGCAG AAAAGGTGCGGCCATCGAGCATCACGTTCGCCACCACCAAGGTGGCGACG GCGGAGCTCCGTGAGCTGATGGTGGCCCTGGTCCGCGTTCACCGGGAGCC CGTGACGTCCCCGACCACCGCCGAGAGGGCCGCGGCGAGGGCGGAGGCCG AGGCGGCGGCCGCGCGTGCGTCCTCGTCGTCGTCGCTGTCGCCGTCCCCG TCCCCTTCCCCGTCCCCATCATCGCCCACGGGGTTGTGAGTCCGAAAGAG CTCCCAAGGTGCGGGAGAGGATGGCTCAGCCGCCCTCTCTCCGGCGCCGC TCTCGCGGGGGCCCTCGTTCTCGTCGCGCCCGCCTCCGCCACGCCGCCGC GACGCCCAGAGGGACGCGGCGGCGACGGCGGCGACGGCGGCGGCCGCAGA AAAGGTGCGGCCATCGAGCATCACGTTCGCCACCACCAAGGTGGCGACGG CGGAGCTCCGTGAGCTGATGGTGGCCCTGGTCCGCGTTCACCGGGAGCCC GTGACGTCCCCGACCACCGCCGAGAGGGCCGCGGCGAGGGCGGAGGCCGA GGCGGCGGCCGCGCGTGCGTCCTCGTCGTCGTCGCTGTCGCCGTCCCCGT CCCCTTCCCCGTCCCCATCATCGCCCACGGGGTTGTGA back to top
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