mRNA_H-canaliculatus_F_contig1053.514.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1053.514.1
Unique NamemRNA_H-canaliculatus_F_contig1053.514.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1053.514.1 vs. uniprot
Match: 1433_FUCVE (14-3-3-like protein n=3 Tax=Phaeophyceae TaxID=2870 RepID=1433_FUCVE)

HSP 1 Score: 457 bits (1175), Expect = 1.220e-160
Identity = 239/251 (95.22%), Postives = 243/251 (96.81%), Query Frame = 1 
Query:   28 MTSRDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICDDILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSAEDRKASASDALDAYKSASDLANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLI-MQLLRDNLTLWTSDQGEAEEAPGNPDGTVVEDL 777
            M SRDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDIC DILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSA++RK SASDALDAY+ ASD ANQDLPPTHPIRLGLALNFSVFYYEILNSP+RAC LAKAAFDDAIAELDTLSEESYKDSTLI MQLLRDNLTLWTSDQGEAEEAPGN DGTVVEDL
Sbjct:    1 MASRDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICADILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSADERKTSASDALDAYQLASDHANQDLPPTHPIRLGLALNFSVFYYEILNSPDRACGLAKAAFDDAIAELDTLSEESYKDSTLIIMQLLRDNLTLWTSDQGEAEEAPGNADGTVVEDL 251
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1053.514.1 vs. uniprot
Match: W7TWA9_9STRA (14-3-3-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWA9_9STRA)

HSP 1 Score: 384 bits (986), Expect = 6.840e-132
Identity = 204/251 (81.27%), Postives = 219/251 (87.25%), Query Frame = 1 
Query:   28 MTSRDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICDDILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSAEDRKASASDALDAYKSASDLANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEA-PGNPDGTVVEDL 777
            M SRD LVY AKLAEQAERFDEMVDHMKAVAQQP+ELSVEERNLLSVAYKNVIGSRRASWRVISSIE K    ++LPLIR+YK+KIE EL +IC+DIL IIE ELIPNSTSEEGKVFY+KMKGDYHRYLAEFQ  E R+ S+  AL AYK A+D+A  DLPPTHPIRLGLALNFSVF+YEI NSP+RAC LAK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQ EA+EA   N DG  VEDL
Sbjct:    1 MDSRDSLVYKAKLAEQAERFDEMVDHMKAVAQQPQELSVEERNLLSVAYKNVIGSRRASWRVISSIEQKGE-QERLPLIREYKAKIEDELLEICNDILNIIETELIPNSTSEEGKVFYFKMKGDYHRYLAEFQVGEKRRESSDAALSAYKCATDIAEHDLPPTHPIRLGLALNFSVFFYEIYNSPDRACALAKKAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQNEADEAGANNEDGNRVEDL 250
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1053.514.1 vs. uniprot
Match: A0A7S3IA22_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3IA22_9CILI)

HSP 1 Score: 375 bits (962), Expect = 3.780e-128
Identity = 194/234 (82.91%), Postives = 212/234 (90.60%), Query Frame = 1 
Query:   37 RDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICDDILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSAEDRKASASDALDAYKSASDLANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEE 738
            RD LVYMAKL+EQAERFDEMV+HMKAVAQQP+ELSVEERNLLSVAYKNVIGSRRASWRV+SSIE K   +D+L LI+DYK+KIE EL DIC DILKII  ELIP STSEEGKVFYYKM+GDYHRYLAEFQS EDRK S+S AL AY+SAS +AN DLPPTHPIRLGLALNFSVF+YEI+NSP+RAC LAK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS+Q + +E
Sbjct:   21 RDSLVYMAKLSEQAERFDEMVEHMKAVAQQPQELSVEERNLLSVAYKNVIGSRRASWRVLSSIESKGE-ADKLQLIQDYKNKIERELVDICADILKIITDELIPRSTSEEGKVFYYKMQGDYHRYLAEFQSGEDRKTSSSSALSAYESASGIANSDLPPTHPIRLGLALNFSVFFYEIMNSPDRACQLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSEQEQTDE 253
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1053.514.1 vs. uniprot
Match: A0A835YSI6_9STRA (14-3-3-like protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI6_9STRA)

HSP 1 Score: 370 bits (949), Expect = 2.790e-126
Identity = 194/247 (78.54%), Postives = 216/247 (87.45%), Query Frame = 1 
Query:   37 RDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICDDILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSAEDRKASASDALDAYKSASDLANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNPDGTVVEDL 777
            R  LVY AKLAEQAERFDEMV  MK V+ QP+ELSVEERNLLSVAYKNVIG+RRASWRVISSIE K    ++LPLIRDYK KIETEL +IC +IL IIE ELIPNS++ EGKVFYYKMKGDYHRYL+EFQ+ + RK S+  AL+AY+ A++ ++QDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGE +EA  + DGT VED+
Sbjct:    3 RSALVYQAKLAEQAERFDEMVSFMKQVSVQPQELSVEERNLLSVAYKNVIGARRASWRVISSIEQKGE-PEKLPLIRDYKKKIETELEEICTEILGIIENELIPNSSATEGKVFYYKMKGDYHRYLSEFQAHDARKESSDKALEAYQHATEWSHQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEGDEAGADADGTRVEDM 248
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1053.514.1 vs. uniprot
Match: A0A8J2SJV0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJV0_9STRA)

HSP 1 Score: 364 bits (934), Expect = 5.720e-124
Identity = 191/248 (77.02%), Postives = 214/248 (86.29%), Query Frame = 1 
Query:   34 SRDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICDDILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSAEDRKASASDALDAYKSASDLANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNPDGTVVEDL 777
            +R++LVY+AKLAEQAERFDEMVDHMK+VA   +ELSVEERNLLSVAYKNVIGSRRASWRVISSIE K   S++  LI +YK KIETEL  IC+DIL IIE  LIPNS  +EGKVFYYKMKGDYHRYLAEFQSA+ RK S+S AL++Y+ AS +AN+DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD  +      N DGT V+DL
Sbjct:    6 TRENLVYLAKLAEQAERFDEMVDHMKSVANYSEELSVEERNLLSVAYKNVIGSRRASWRVISSIEQKSD-SEKTALITNYKKKIETELETICEDILGIIEKTLIPNSAGDEGKVFYYKMKGDYHRYLAEFQSADKRKESSSSALESYQQASQIANKDLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDNADNNH-DNNADGTAVQDL 251
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1053.514.1 vs. uniprot
Match: B8BX06_THAPS (14-3-3-like protein n=3 Tax=Thalassiosirales TaxID=33847 RepID=B8BX06_THAPS)

HSP 1 Score: 362 bits (928), Expect = 4.060e-123
Identity = 189/240 (78.75%), Postives = 212/240 (88.33%), Query Frame = 1 
Query:   37 RDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICDDILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSAEDRKASASDALDAYKSASDLANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNPD 756
            RD LVY AKLAEQAERFDEMV  MK VA+QP+EL+VEERNLLSVAYKNVIGSRRASWRV++SIE K   +D++ +I+DYK+KIE EL DIC+DIL IIE  LIPNSTSEE KVFYYKMKGDYHRYL+EFQ  + RKASAS ALDAY+SA+++A+ DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQ    EA G P+
Sbjct:    3 RDSLVYKAKLAEQAERFDEMVSDMKEVARQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGD-ADKMSIIKDYKAKIENELCDICNDILSIIEESLIPNSTSEEAKVFYYKMKGDYHRYLSEFQQGDVRKASASAALDAYQSATEVASSDLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQAADAEA-GEPE 240
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1053.514.1 vs. uniprot
Match: F0YC30_AURAN (14_3_3 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC30_AURAN)

HSP 1 Score: 359 bits (921), Expect = 5.220e-122
Identity = 190/251 (75.70%), Postives = 210/251 (83.67%), Query Frame = 1 
Query:   25 IMTSRDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICDDILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSAEDRKASASDALDAYKSASDLANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNPDGTVVEDL 777
            ++  RDDLVY+AKLAEQAERFDEMV+HMK VA   +ELSVEERNLLSVAYKNVIGSRRASWRVISSIE K   S++  +I  YK KIETEL  IC DILKII  +LIPNS  +EGKVFYYKMKGDYHRYLAEFQ++E R  S+SDALDAY+ AS +AN+DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AK AFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD     EA     G  V D+
Sbjct:    1 MVKERDDLVYLAKLAEQAERFDEMVEHMKTVAGYSEELSVEERNLLSVAYKNVIGSRRASWRVISSIEAKSD-SEKTAMITSYKKKIETELETICADILKIIATQLIPNSVGDEGKVFYYKMKGDYHRYLAEFQASEVRNKSSSDALDAYQEASRIANKDLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDNAVDVEASNAEGGGQVGDV 250
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1053.514.1 vs. uniprot
Match: A0A7S1H1R2_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H1R2_9STRA)

HSP 1 Score: 358 bits (918), Expect = 2.270e-121
Identity = 187/243 (76.95%), Postives = 211/243 (86.83%), Query Frame = 1 
Query:   19 FSIMTSRDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICDDILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSAEDRKASASDALDAYKSASDLANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQG-EAEEAP 744
            F  M  RD LVY AKLAEQAERFDEMV  MK VA+QP+EL+VEERNLLSVAYKNVIG+RRASWRV++SIE K    D+LP I+DYK+KIE EL DIC+DIL IIE  LI NSTSEE KVFYYKMKGDYHRYL+EFQ+ + RK SA+ ALDAY++AS +A+ DLPPTHPIRLGLALNFSVFYYEILNSP++ACN+AK AFDDAIAELDTL+EESYKDSTLIMQLLRDNLTLWTSDQ  +A +AP
Sbjct:   14 FIKMADRDTLVYKAKLAEQAERFDEMVTDMKEVARQPQELTVEERNLLSVAYKNVIGARRASWRVVTSIEQKGE-PDKLPTIKDYKAKIENELVDICNDILSIIEESLIRNSTSEEAKVFYYKMKGDYHRYLSEFQAGDSRKESATSALDAYQAASRIASSDLPPTHPIRLGLALNFSVFYYEILNSPDKACNIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQAADAGDAP 255
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1053.514.1 vs. uniprot
Match: A0A7S2I2S0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I2S0_9STRA)

HSP 1 Score: 357 bits (916), Expect = 3.000e-121
Identity = 189/243 (77.78%), Postives = 213/243 (87.65%), Query Frame = 1 
Query:   37 RDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICDDILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSAEDRKASASDALDAYKSASDLANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD---QGEA-EEAPGNP 753
            RD LVY AKLAEQAERFDEMV  MK VA+QP+EL+VEERNLLSVAYKNVIGSRRASWRVISSIE K   SD++ +I+DYKSKIE+EL DIC+DIL IIE  L+PNST+EE +VFYYKMKGDYHRYL+EFQ    RKASAS ALDAY++AS +A+ DLPPTHPIRLGLALNFSVFYYEILNSP+RAC++AK AFDDAIAELDTL++ESYKDSTLIMQLLRDNLTLWTSD   +GE  EE P +P
Sbjct:    3 RDSLVYKAKLAEQAERFDEMVSDMKEVARQPQELTVEERNLLSVAYKNVIGSRRASWRVISSIEQKGD-SDKMQIIKDYKSKIESELVDICNDILGIIEECLVPNSTTEEAEVFYYKMKGDYHRYLSEFQQGSARKASASAALDAYQAASGIASSDLPPTHPIRLGLALNFSVFYYEILNSPDRACHIAKQAFDDAIAELDTLNKESYKDSTLIMQLLRDNLTLWTSDTQAEGEGGEETPADP 244
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1053.514.1 vs. uniprot
Match: A0A1E7FAR9_9STRA (14-3-3 protein n=3 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7FAR9_9STRA)

HSP 1 Score: 356 bits (913), Expect = 6.950e-121
Identity = 183/235 (77.87%), Postives = 208/235 (88.51%), Query Frame = 1 
Query:   37 RDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYKNVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICDDILKIIEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSAEDRKASASDALDAYKSASDLANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEA 741
            RD LVY AKLAEQAERFDEMV  MK VA+QP+EL+VEERNLLSVAYKNVIGSRRASWRV++SIE K   SD++ +I+DYKSKIE EL +IC+DIL IIE  LIPNSTSEE KVFYYKMKGDYHRYL+EFQ+ + RK SA  ALDAY++AS +A  DLPPTHPIRLGLALNFSVFYYEILN+P++AC++AK AFDDAIAELDTL+EESYKDSTLIMQLLRDNLTLWTSDQ +A+ A
Sbjct:    3 RDSLVYKAKLAEQAERFDEMVQDMKEVAKQPQELTVEERNLLSVAYKNVIGSRRASWRVVTSIEQKGD-SDKMEIIKDYKSKIECELVEICNDILGIIEESLIPNSTSEEAKVFYYKMKGDYHRYLSEFQTGDTRKESAGAALDAYQAASGIAQSDLPPTHPIRLGLALNFSVFYYEILNAPDKACSIAKQAFDDAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSDQADADGA 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1053.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
1433_FUCVE1.220e-16095.2214-3-3-like protein n=3 Tax=Phaeophyceae TaxID=287... [more]
W7TWA9_9STRA6.840e-13281.2714-3-3-like protein n=2 Tax=Monodopsidaceae TaxID=... [more]
A0A7S3IA22_9CILI3.780e-12882.91Hypothetical protein n=1 Tax=Fabrea salina TaxID=3... [more]
A0A835YSI6_9STRA2.790e-12678.5414-3-3-like protein n=2 Tax=Tribonema minus TaxID=... [more]
A0A8J2SJV0_9STRA5.720e-12477.02Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
B8BX06_THAPS4.060e-12378.7514-3-3-like protein n=3 Tax=Thalassiosirales TaxID... [more]
F0YC30_AURAN5.220e-12275.7014_3_3 domain-containing protein n=1 Tax=Aureococc... [more]
A0A7S1H1R2_9STRA2.270e-12176.95Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7S2I2S0_9STRA3.000e-12177.78Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A1E7FAR9_9STRA6.950e-12177.8714-3-3 protein n=3 Tax=Bacillariaceae TaxID=33852 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1053contigH-canaliculatus_F_contig1053:27345..30893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score488.0
Seed ortholog evalue2.6e-135
Seed eggNOG ortholog2880.D7FN58
KEGG koko:K06630
KEGG Pathwayko04011,ko04110,ko04114,ko04151,ko04390,ko04391,ko04722,ko05169,ko05203,map04011,map04110,map04114,map04151,map04390,map04391,map04722,map05169,map05203
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0031410,GO:0031982,GO:0042470,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048770,GO:0097708
EggNOG free text desc.protein domain specific binding
EggNOG OGsCOG5040@1,KOG0841@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog description14-3-3-like protein
Ec32 orthologEc-06_008490.1
Exons5
Model size957
Cds size753
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928705.083813-UTR-H-canaliculatus_F_contig1053:27344..273711622928705.083813-UTR-H-canaliculatus_F_contig1053:27344..27371Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1053 27345..27371 +
1696845531.6700885-UTR-H-canaliculatus_F_contig1053:27344..273711696845531.6700885-UTR-H-canaliculatus_F_contig1053:27344..27371Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1053 27345..27371 +
1622928705.188961-UTR-H-canaliculatus_F_contig1053:30716..308931622928705.188961-UTR-H-canaliculatus_F_contig1053:30716..30893Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1053 30717..30893 +
1696845531.729168-UTR-H-canaliculatus_F_contig1053:30716..308931696845531.729168-UTR-H-canaliculatus_F_contig1053:30716..30893Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1053 30717..30893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928705.0969887-CDS-H-canaliculatus_F_contig1053:27371..274271622928705.0969887-CDS-H-canaliculatus_F_contig1053:27371..27427Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1053 27372..27427 +
1696845531.6836603-CDS-H-canaliculatus_F_contig1053:27371..274271696845531.6836603-CDS-H-canaliculatus_F_contig1053:27371..27427Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1053 27372..27427 +
1622928705.1145818-CDS-H-canaliculatus_F_contig1053:27957..281171622928705.1145818-CDS-H-canaliculatus_F_contig1053:27957..28117Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1053 27958..28117 +
1696845531.6936443-CDS-H-canaliculatus_F_contig1053:27957..281171696845531.6936443-CDS-H-canaliculatus_F_contig1053:27957..28117Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1053 27958..28117 +
1622928705.13253-CDS-H-canaliculatus_F_contig1053:28551..287151622928705.13253-CDS-H-canaliculatus_F_contig1053:28551..28715Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1053 28552..28715 +
1696845531.70453-CDS-H-canaliculatus_F_contig1053:28551..287151696845531.70453-CDS-H-canaliculatus_F_contig1053:28551..28715Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1053 28552..28715 +
1622928705.1494849-CDS-H-canaliculatus_F_contig1053:30030..302321622928705.1494849-CDS-H-canaliculatus_F_contig1053:30030..30232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1053 30031..30232 +
1696845531.712613-CDS-H-canaliculatus_F_contig1053:30030..302321696845531.712613-CDS-H-canaliculatus_F_contig1053:30030..30232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1053 30031..30232 +
1622928705.1648936-CDS-H-canaliculatus_F_contig1053:30545..307161622928705.1648936-CDS-H-canaliculatus_F_contig1053:30545..30716Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1053 30546..30716 +
1696845531.7208045-CDS-H-canaliculatus_F_contig1053:30545..307161696845531.7208045-CDS-H-canaliculatus_F_contig1053:30545..30716Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1053 30546..30716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1053.514.1prot_H-canaliculatus_F_contig1053.514.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1053 27372..30716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1053.514.1

>prot_H-canaliculatus_F_contig1053.514.1 ID=prot_H-canaliculatus_F_contig1053.514.1|Name=mRNA_H-canaliculatus_F_contig1053.514.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=251bp
MTSRDDLVYMAKLAEQAERFDEMVDHMKAVAQQPKELSVEERNLLSVAYK
NVIGSRRASWRVISSIEGKDTVSDQLPLIRDYKSKIETELTDICDDILKI
IEAELIPNSTSEEGKVFYYKMKGDYHRYLAEFQSAEDRKASASDALDAYK
SASDLANQDLPPTHPIRLGLALNFSVFYYEILNSPERACNLAKAAFDDAI
AELDTLSEESYKDSTLIMQLLRDNLTLWTSDQGEAEEAPGNPDGTVVEDL
*
back to top

mRNA from alignment at H-canaliculatus_F_contig1053:27345..30893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1053.514.1 ID=mRNA_H-canaliculatus_F_contig1053.514.1|Name=mRNA_H-canaliculatus_F_contig1053.514.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3549bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1053:27345..30893+ (Hapterophycus canaliculatus Oshoro5f female)
CCCCATCCGAAACCAACTTTCAGCATCATGACTTCCCGCGACGACCTCGT
ATACATGGCCAAGCTCGCTGAGCAAGCCGAGCGGTGAGTAGATTTGCCTT
CCTTACGTGCACTCCCGGTTATGCGCGAGAATCAGTTTGTCTTCCGGGAC
AAGTAGAAAAATGACGGAATTCCTCTACCGTCATGGTCGGCATTCCGTCA
TCGCCATGCCCGTCTGGTTGCCCTGCGACCCTTCGTCCTATCCTTCCTCC
CTTGCCTCTTCGCTCGCCCACGTGCGCGCGTAGGGTACGGAGTATCATGA
GTTGAGTTAGCGGCTAGTCGGTTCGATTGCATTCCGAGATTGCATCCACG
TGGGCTTCCGGTACCGTTGTGTCCTCGCCTTTCTTCTTCGAGGGACAGAG
GGCGAGAAATTCGTTGAGTTTTCAGGAATCCAGATTTGTAGGATGAGACG
CGGGCGTCACACGCCCCGTGGGGAGGAGAGACCAGAGACCTGCCGGTCGC
TCCCAGACCTTGCACGTCACACCAGGGGTGTATTTGGCCTCACGCCTCAC
GCTGAAGTCTTCTCCGCTACGTGTTGGTCGGTGCATTTCCCGCTGCTTCT
CTCATCCGTGCAGTTTCGACGAGATGGTGGACCACATGAAGGCTGTCGCC
CAGCAGCCGAAGGAACTGTCGGTTGAGGAGCGCAACCTCCTCTCCGTCGC
CTACAAGAACGTGATCGGCTCTCGCCGAGCATCATGGAGGGTTATCAGCT
CCATCGAGGGGAAGGACACCGTGGTGAGGGCTGTGGTGGCGATATGCGCC
GCGTTTAACACAAGATGCTCGCCTCGGTTGCAGTTTCCTCCCTCAGTCGT
GTGTCGATGCGTCAAAACCGAATTTTCGCTATTATTTTTTAGCACTCTGT
TTTATCAAGAGCAAAGTGAGAGGCGAAGAGACGCCGGGAAAATCTGGATG
CTACTTTGTTTTTGCACTTCCGTCTCGCCGACCGAATGCGCCCTGATCGA
GTCCTGCCCTGGCTCCAAGCTGCAGGGTGATCATTAGCATGTCAGCATCG
CTCGACGGGAGAAACCTCGAGGCCACCCGTTTCAAACGGGTACAAATCTC
CGATCACAATCTTACGTTTTCCTCGACACGGATTTTCCCCGCGTGACATT
TTTTCCTTTTTCCCCGCCGACCGCCCGCACCTCTCCTTGGGACGTACCGA
ACAAAAGAGCGACCAGCTCCCCCTGATCCGTGACTACAAGTCCAAGATAG
AGACCGAGCTCACGGACATCTGCGACGACATCTTGAAGATCATCGAAGCA
GAGCTGATCCCAAACTCCACTTCCGAGGAGGGCAAGGTCTTCTACTACAA
GATGAAGGGCGACTACCACCGGTGAGATGAGCATCTGCTGTCTCCTGCAT
GTTGCGTTTTTTTGCGGAATTTGTCGGCGCGCGGTCCAGAGACGCGCGTT
TATCACGCCCGAGAATTACGTGGTTTTACTCTACGAGTGCGGAGCCGGGG
CTGCAAATCTACCCGCCTGGGAACCCAACCCGGGTGGTACACTTGCCGCC
GTCCCGAAAGCTTGTCGAAGGAGCCCTATCGATCACCACGCTCGCCGGCC
GTTTGGAATAGTGAGAAATCCATGTATTCCCGACAGTTCATTTGAGCCAA
ACGATAATTCACATGAGGCCACCGTGCCCACATATCTTCTTCTAACCTAA
TTTCTTTTAAGGTAGCTTTTCGTCTGACGCCTCCGGCTCTTTGCCCATTT
ACAACTAGACTGAAGTCGAAATTGGGTCGGATGGGATGGGAACCAAGCCG
AATCGCGTCCACGAAGCTATTAAAGGAAGAGGCAGCGGTTGGACTGGTCT
AAAATACCTGGTAATCTATCTCGGCATGAAATCACAAATTCAAGTTGAAA
TCGAACTGTTGGTCAACGAAGTCCCCTGCTTCAACACAGCCGTGCGTATC
CTACGCGTCTTCGCCACCTTTGAAGCTCAAGAGCATCTAGCCCACGTGCT
GATCAGCTGATCATTTCATGTCGGGCACATCACCAAGCCGCTTTTCGCTT
CAGTTTTCGGTGGTACAAGACGTCAGTGGTTGATCTGTCTTATTCCGTGG
ATTATTTTGTTGCGCAGTCGTCGCGGTGATCGTGAAGCATGCCGAAACGT
TCGCCAACTTATCTCTTTGAAGGTGCGTATTTCATTTGTCGTACCCCTTC
AACATCTCACTTTCACCATCCTTGTGATACTACAGGAAAGAGGGCCAACT
TTTATTTTCATAGCGAAGTCGAATGGGCACTCGGAGCGCGTTGGTGGTAC
TGCTTTCTTCCCTTCGTGGCAGCCGGCTTGGTCCGCACCTCTGCCAATTT
CTTTTTCCGAGAAAAAAATATCGAGTGAACGATTTACCTGTGGTTTTCGC
CTTCTGAAGATATCCATAACCTCCAAAAGACGAACGCGGCACAGACATGG
CGGCAAAGCTTTGGCCGTGGGTCTTTCGAGAAGAACCCTCTCGACCACAC
CACCGTTCACACTCCTTCGGTTTATCCAGACTGCTGACTCCAGGGCGTGG
ATCTTCGATTTTTGTTCTCTTTCATAATGGCGTTGTAGAGTAAGGCCGCA
AATACGACCGCTTGAAATGTGAATCTCAAATCCCGCGGGCGGCTCGCTCC
GTTCACCCGAAATTCTGCGTCGACGGTCATCTGCAGGTATCTTGCTGAAT
TCCAGTCTGCGGAGGACCGAAAGGCGAGCGCATCCGACGCACTCGACGCC
TACAAGTCCGCATCAGACTTGGCAAACCAGGACCTGCCCCCCACCCACCC
GATCCGCCTGGGCCTCGCTCTCAACTTCTCCGTCTTCTACTATGAAATCC
TCAACTCGCCGGAGCGCGCGTGCAACTTGGCCAAGGCGGTGAGTCTTGTG
AAACAAACATAAAACGATGAAACGCATAAACAGATCCAAAAGAAGCTTGC
GCCTGCCGAGTTTTAATACCACATACGGGACCGGTTTGCGGTGCGTTTTC
GCTCCGCTCAGGTCGTTACGATGGTATCACGGGCAACTGTCGCTCGTTCA
ACTCTTCTTCAAAAGTAGGCCAAAGGGAACTTTGCTGGTGGTTGCAGAGA
TAGGTTGCGTGCACGTGGAGGTTCCCTGCAGTTTTCTCCCTTTCTTCACA
CCTTCCGCTTACATTCGTGATGCCAAATTTGTCATTTGAACCATCTCTCA
GGCCTTCGACGACGCGATCGCAGAGCTCGACACCCTCTCGGAGGAGTCCT
ACAAAGACTCGACCCTCATCATGCAGCTCCTCCGCGACAACCTTACTCTG
TGGACATCGGACCAGGGAGAAGCAGAAGAGGCACCCGGAAACCCCGACGG
GACTGTTGTGGAAGACCTCTAACTAACACCCATCCGTTTCACCTCAATCG
ATCGCGTGACTCGGAACACTTAGCATTGGTGTACCGCGTTGATTCTTCTT
GTACGGGTTTTGGTGAGGAGATGAGCGTTCTTGCGCCAGCCGATAGGGGT
GAAAGGACACATGTATACACTGAAGCCGCATCACCGTTGGCAGGCTTTC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1053:27345..30893+

>mRNA_H-canaliculatus_F_contig1053.514.1 ID=mRNA_H-canaliculatus_F_contig1053.514.1|Name=mRNA_H-canaliculatus_F_contig1053.514.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1053:27345..30893+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACTTCCCGCGACGACCTCGTATACATGGCCAAGCTCGCTGAGCAAGC
CGAGCGATGACTTCCCGCGACGACCTCGTATACATGGCCAAGCTCGCTGA
GCAAGCCGAGCGTTTCGACGAGATGGTGGACCACATGAAGGCTGTCGCCC
AGCAGCCGAAGGAACTGTCGGTTGAGGAGCGCAACCTCCTCTCCGTCGCC
TACAAGAACGTGATCGGCTCTCGCCGAGCATCATGGAGGGTTATCAGCTC
CATCGAGGGGAAGGACACCGTGTTTCGACGAGATGGTGGACCACATGAAG
GCTGTCGCCCAGCAGCCGAAGGAACTGTCGGTTGAGGAGCGCAACCTCCT
CTCCGTCGCCTACAAGAACGTGATCGGCTCTCGCCGAGCATCATGGAGGG
TTATCAGCTCCATCGAGGGGAAGGACACCGTGAGCGACCAGCTCCCCCTG
ATCCGTGACTACAAGTCCAAGATAGAGACCGAGCTCACGGACATCTGCGA
CGACATCTTGAAGATCATCGAAGCAGAGCTGATCCCAAACTCCACTTCCG
AGGAGGGCAAGGTCTTCTACTACAAGATGAAGGGCGACTACCACCGAGCG
ACCAGCTCCCCCTGATCCGTGACTACAAGTCCAAGATAGAGACCGAGCTC
ACGGACATCTGCGACGACATCTTGAAGATCATCGAAGCAGAGCTGATCCC
AAACTCCACTTCCGAGGAGGGCAAGGTCTTCTACTACAAGATGAAGGGCG
ACTACCACCGGTATCTTGCTGAATTCCAGTCTGCGGAGGACCGAAAGGCG
AGCGCATCCGACGCACTCGACGCCTACAAGTCCGCATCAGACTTGGCAAA
CCAGGACCTGCCCCCCACCCACCCGATCCGCCTGGGCCTCGCTCTCAACT
TCTCCGTCTTCTACTATGAAATCCTCAACTCGCCGGAGCGCGCGTGCAAC
TTGGCCAAGGCGGTATCTTGCTGAATTCCAGTCTGCGGAGGACCGAAAGG
CGAGCGCATCCGACGCACTCGACGCCTACAAGTCCGCATCAGACTTGGCA
AACCAGGACCTGCCCCCCACCCACCCGATCCGCCTGGGCCTCGCTCTCAA
CTTCTCCGTCTTCTACTATGAAATCCTCAACTCGCCGGAGCGCGCGTGCA
ACTTGGCCAAGGCGGCCTTCGACGACGCGATCGCAGAGCTCGACACCCTC
TCGGAGGAGTCCTACAAAGACTCGACCCTCATCATGCAGCTCCTCCGCGA
CAACCTTACTCTGTGGACATCGGACCAGGGAGAAGCAGAAGAGGCACCCG
GAAACCCCGACGGGACTGTTGTGGAAGACCTCTAAGCCTTCGACGACGCG
ATCGCAGAGCTCGACACCCTCTCGGAGGAGTCCTACAAAGACTCGACCCT
CATCATGCAGCTCCTCCGCGACAACCTTACTCTGTGGACATCGGACCAGG
GAGAAGCAGAAGAGGCACCCGGAAACCCCGACGGGACTGTTGTGGAAGAC
CTCTAA
back to top