mRNA_H-canaliculatus_F_contig10522.509.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10522.509.1
Unique NamemRNA_H-canaliculatus_F_contig10522.509.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10522.509.1 vs. uniprot
Match: A0A6H5JH84_9PHAE (Mre11_DNA_bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH84_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.890e-17
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   10 IEKRDQVLVRLRVEHSDFPTLNNQRFGSQFMGKVANPSDLLL 135
            IEKR+QVLVRL+VEHSDFPTLNNQRFGSQFMGKVANPSDLLL
Sbjct:  326 IEKRNQVLVRLKVEHSDFPTLNNQRFGSQFMGKVANPSDLLL 367
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10522.509.1 vs. uniprot
Match: A0A7S4DCZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCZ4_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 5.010e-14
Identity = 32/45 (71.11%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    4 YLIEKRDQVLVRLRVEHSDFPTLNNQRFGSQFMGKVANPSDLLLF 138
            + +E R+Q LVRL+VEH+ FP+LNNQRFGSQF+G+VANP+DLLLF
Sbjct:    2 FRVEHREQALVRLKVEHTGFPSLNNQRFGSQFVGRVANPADLLLF 46
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10522.509.1 vs. uniprot
Match: A0A7R9ZG15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZG15_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.180e-14
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   16 KRDQVLVRLRVEHSDFPTLNNQRFGSQFMGKVANPSDLLLFXXXXXXXXXXXXGGS 183
            K DQVLVRL+VEHS F TLNNQRFGS+F+ +VANPSD+LLF            GGS
Sbjct:    1 KPDQVLVRLKVEHSGFGTLNNQRFGSRFVSEVANPSDILLFHRRKQVETVKAGGGS 56
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10522.509.1 vs. uniprot
Match: A0A7S0C7E5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7E5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 8.040e-14
Identity = 30/46 (65.22%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 QYLIEKRDQVLVRLRVEHSDFPTLNNQRFGSQFMGKVANPSDLLLF 138
            +Y ++K ++VLVRL+V+HS F TLNNQRFG++F+G+VANPSD+LLF
Sbjct:   41 RYTLQKPNEVLVRLKVDHSGFSTLNNQRFGAKFVGEVANPSDILLF 86
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10522.509.1 vs. uniprot
Match: A0A7S2UFV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UFV9_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.180e-13
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:   10 IEKRDQVLVRLRVEHSDFPTLNNQRFGSQFMGKVANPSDLLLF 138
            I+K DQVLVRLRVEHS F TLNNQRFG++F+G VANPSD+LLF
Sbjct:  463 IDKPDQVLVRLRVEHSGFSTLNNQRFGAKFVGDVANPSDILLF 505
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10522.509.1 vs. uniprot
Match: B8C3H0_THAPS (Mre11_DNA_bind domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3H0_THAPS)

HSP 1 Score: 71.2 bits (173), Expect = 5.470e-13
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    4 YLIEKRDQVLVRLRVEHSDFPTLNNQRFGSQFMGKVANPSDLLLF 138
            Y ++  +QVLVRL+VEHS F TLNNQRFGS+F+G+VANPSD+LLF
Sbjct:  354 YTLQSPEQVLVRLKVEHSGFTTLNNQRFGSRFVGEVANPSDILLF 398
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10522.509.1 vs. uniprot
Match: K0RA76_THAOC (Mre11_DNA_bind domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RA76_THAOC)

HSP 1 Score: 70.9 bits (172), Expect = 7.510e-13
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 QYLIEKRDQVLVRLRVEHSDFPTLNNQRFGSQFMGKVANPSDLLLF 138
            +Y I   D+VLVRLRVEH+ F TLNNQRFG+QF+G+VANPSD+LLF
Sbjct:   49 RYEIRDPDKVLVRLRVEHTGFSTLNNQRFGAQFVGQVANPSDILLF 94
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10522.509.1 vs. uniprot
Match: A0A7S1Z5E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z5E1_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.410e-12
Identity = 32/45 (71.11%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    4 YLIEKRDQVLVRLRVEHSDFPTLNNQRFGSQFMGKVANPSDLLLF 138
            + I+K DQVLVRL+VEH+ F TLNNQRFG++F+ +VANPSDLLLF
Sbjct:  347 FTIQKPDQVLVRLKVEHTGFSTLNNQRFGARFVSEVANPSDLLLF 391
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10522.509.1 vs. uniprot
Match: A0A7S2S2B7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S2B7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.920e-12
Identity = 30/46 (65.22%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 QYLIEKRDQVLVRLRVEHSDFPTLNNQRFGSQFMGKVANPSDLLLF 138
            +Y I + +QVL+RLRVEH+ F +LNNQR GS+F+G+VANPSD+LLF
Sbjct:   14 KYKIIQPNQVLIRLRVEHAGFASLNNQRIGSRFVGEVANPSDILLF 59
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10522.509.1 vs. uniprot
Match: A0A7S4MXX5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MXX5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.970e-12
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 QYLIEKRDQVLVRLRVEHSDFPTLNNQRFGSQFMGKVANPSDLLLF 138
            +Y + K DQVLVRL+VEHS F TLNNQRFGS+F+  +ANPSD+LLF
Sbjct:  429 KYKLMKPDQVLVRLKVEHSGFGTLNNQRFGSRFVTDIANPSDILLF 474
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10522.509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH84_9PHAE1.890e-1795.24Mre11_DNA_bind domain-containing protein n=2 Tax=E... [more]
A0A7S4DCZ4_HETAK5.010e-1471.11Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9ZG15_9STRA5.180e-1462.50Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S0C7E5_9STRA8.040e-1465.22Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2UFV9_9STRA2.180e-1379.07Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
B8C3H0_THAPS5.470e-1371.11Mre11_DNA_bind domain-containing protein (Fragment... [more]
K0RA76_THAOC7.510e-1371.74Mre11_DNA_bind domain-containing protein n=1 Tax=T... [more]
A0A7S1Z5E1_9STRA1.410e-1271.11Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S2S2B7_9STRA1.920e-1265.22Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S4MXX5_9STRA4.970e-1269.57Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10522contigH-canaliculatus_F_contig10522:3503..4412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog2880.D7FN26
Preferred nameMRE11
KEGG koko:K10865
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
GOsGO:0000228,GO:0000785,GO:0000791,GO:0000793,GO:0000794,GO:0000795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0070013,GO:0099086
EggNOG free text desc.manganese ion binding
EggNOG OGsCOG0420@1,KOG2310@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928704.1365697-CDS-H-canaliculatus_F_contig10522:3502..35771622928704.1365697-CDS-H-canaliculatus_F_contig10522:3502..3577Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10522 3503..3577 -
1696845531.2019715-CDS-H-canaliculatus_F_contig10522:3502..35771696845531.2019715-CDS-H-canaliculatus_F_contig10522:3502..3577Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10522 3503..3577 -
1622928704.150179-CDS-H-canaliculatus_F_contig10522:4304..44121622928704.150179-CDS-H-canaliculatus_F_contig10522:4304..4412Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10522 4305..4412 -
1696845531.2140808-CDS-H-canaliculatus_F_contig10522:4304..44121696845531.2140808-CDS-H-canaliculatus_F_contig10522:4304..4412Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10522 4305..4412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10522.509.1prot_H-canaliculatus_F_contig10522.509.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10522 3503..4412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10522.509.1

>prot_H-canaliculatus_F_contig10522.509.1 ID=prot_H-canaliculatus_F_contig10522.509.1|Name=mRNA_H-canaliculatus_F_contig10522.509.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=61bp
QYLIEKRDQVLVRLRVEHSDFPTLNNQRFGSQFMGKVANPSDLLLFYRRR
NMGGGGAAGGS
back to top

mRNA from alignment at H-canaliculatus_F_contig10522:3503..4412-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10522.509.1 ID=mRNA_H-canaliculatus_F_contig10522.509.1|Name=mRNA_H-canaliculatus_F_contig10522.509.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=910bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10522:3503..4412- (Hapterophycus canaliculatus Oshoro5f female)
CAGTACCTGATCGAGAAGAGGGACCAGGTGCTGGTGAGATTGAGGGTGGA
GCACTCGGACTTCCCGACGCTCAACAACCAGCGCTTCGGCAGCCAGTTCA
TGGGGAAGGTGGGCGCTGATGTCGTGCCATGTGGTATCTTCGCAGGCTTG
TTTTTATCGTGGCGGGATCGGATGTATTCTAGCGGAATGGGATGGGATCG
GATGGGATCGGATGGGACGGGATCGGATCGAATATATTGTAGTGGGATGG
GACAGGATGGGACGGGATGGGATGGGATGTGGTACGGGATTCACTCCTGC
CGCCGGCGGTGTGGTTTGGAGAACGAGTATCCAAGTCTTCATTTCGCGCT
CGTGAAAATGGTTGCATCATTGCGCGCATTCCCCGGAGTCGAGGCACATC
ACGCTCAAAGGCAGGCAACGAACCCCCTCCGACTGAGAGAAAAAGGAAGA
GGAAGTGTTAAGTGCGACAAAAAACAGAGGGAGAGACGACGCAGCACTAC
CTCCACCATTAGCACCACCATTAGCACCAGCATCAGCACCAGCACCAGCA
TTAGCATCAGCACCAGCAGCAGCACCACCACAACCATCAGCATCAGCACC
AGCACCAGCATCAGCATCAGCATCAGCATCAGCATCAGTATCGGCATCAG
CACCGGCATCGGCAGCCGTAACCCCCCTCTCTCCCCCTCAGTACATCGTC
CCCTACCCCCCCAATCTCTCCGTTCTCCCTACTCCCCCCCTTCCCCTTTC
ACGACACCGTGGACAACGTACCCACCGCGTACACACTCCACGCACAAGAA
CGCCTCTTTTTCTCATCGATGCCTCCTCGCCACAGGTGGCCAACCCCTCC
GACCTCCTGCTCTTCTACCGGCGGCGCAACATGGGCGGGGGGGGCGCCGC
GGGTGGATCT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10522:3503..4412-

>mRNA_H-canaliculatus_F_contig10522.509.1 ID=mRNA_H-canaliculatus_F_contig10522.509.1|Name=mRNA_H-canaliculatus_F_contig10522.509.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10522:3503..4412- (Hapterophycus canaliculatus Oshoro5f female)
CAGTACCTGATCGAGAAGAGGGACCAGGTGCTGGTGAGATTGAGGGTGGA
GCACTCGGACTTCCCGACGCTCAACAACCAGCGCTTCGGCAGCCAGTTCA
TGGGGAAGCAGTACCTGATCGAGAAGAGGGACCAGGTGCTGGTGAGATTG
AGGGTGGAGCACTCGGACTTCCCGACGCTCAACAACCAGCGCTTCGGCAG
CCAGTTCATGGGGAAGGTGGCCAACCCCTCCGACCTCCTGCTCTTCTACC
GGCGGCGCAACATGGGCGGGGGGGGCGCCGCGGGTGGATCTGTGGCCAAC
CCCTCCGACCTCCTGCTCTTCTACCGGCGGCGCAACATGGGCGGGGGGGG
CGCCGCGGGTGGATCT
back to top