mRNA_H-canaliculatus_F_contig10510.497.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10510.497.1
Unique NamemRNA_H-canaliculatus_F_contig10510.497.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10510.497.1 vs. uniprot
Match: A0A6H5KXP9_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXP9_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.310e-53
Identity = 92/110 (83.64%), Postives = 96/110 (87.27%), Query Frame = 3 
Query:    3 VPLKDALLLHEVLEDHAEDLEDALGMYSKASSGGAVEMADFARAAKVISGKELSSACVWLVFKMFDKGADGRLEHDELIEATHERLRRLPGQPESIGKFARFVQCVRGDP 332
            +PL+DALLLHEVLEDHA+DLEDALGMYSKASSGGAV   DFARAAKVISGKELS  CVWLVFKMFD GADGRLEHDELIEATH RLR LPG+ E     ARFVQCVRGDP
Sbjct:  120 IPLRDALLLHEVLEDHAQDLEDALGMYSKASSGGAVTATDFARAAKVISGKELSPECVWLVFKMFDSGADGRLEHDELIEATHHRLRSLPGRREFPNSVARFVQCVRGDP 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10510.497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXP9_9PHAE2.310e-5383.64EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10510contigH-canaliculatus_F_contig10510:1340..2923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1167
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10510.497.1prot_H-canaliculatus_F_contig10510.497.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10510 2302..2846 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928702.438676-UTR-H-canaliculatus_F_contig10510:1339..21001622928702.438676-UTR-H-canaliculatus_F_contig10510:1339..2100Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10510 1340..2100 -
1696845530.6088195-UTR-H-canaliculatus_F_contig10510:1339..21001696845530.6088195-UTR-H-canaliculatus_F_contig10510:1339..2100Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10510 1340..2100 -
1622928702.4580982-UTR-H-canaliculatus_F_contig10510:2230..23011622928702.4580982-UTR-H-canaliculatus_F_contig10510:2230..2301Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10510 2231..2301 -
1696845530.6167567-UTR-H-canaliculatus_F_contig10510:2230..23011696845530.6167567-UTR-H-canaliculatus_F_contig10510:2230..2301Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10510 2231..2301 -
1622928702.5034616-UTR-H-canaliculatus_F_contig10510:2846..29231622928702.5034616-UTR-H-canaliculatus_F_contig10510:2846..2923Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10510 2847..2923 -
1696845530.6527143-UTR-H-canaliculatus_F_contig10510:2846..29231696845530.6527143-UTR-H-canaliculatus_F_contig10510:2846..2923Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10510 2847..2923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928702.470612-CDS-H-canaliculatus_F_contig10510:2301..25201622928702.470612-CDS-H-canaliculatus_F_contig10510:2301..2520Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10510 2302..2520 -
1696845530.626505-CDS-H-canaliculatus_F_contig10510:2301..25201696845530.626505-CDS-H-canaliculatus_F_contig10510:2301..2520Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10510 2302..2520 -
1622928702.4854274-CDS-H-canaliculatus_F_contig10510:2807..28461622928702.4854274-CDS-H-canaliculatus_F_contig10510:2807..2846Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10510 2808..2846 -
1696845530.6389275-CDS-H-canaliculatus_F_contig10510:2807..28461696845530.6389275-CDS-H-canaliculatus_F_contig10510:2807..2846Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10510 2808..2846 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10510.497.1

>prot_H-canaliculatus_F_contig10510.497.1 ID=prot_H-canaliculatus_F_contig10510.497.1|Name=mRNA_H-canaliculatus_F_contig10510.497.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=86bp
MYSKASSGGAVEMADFARAAKVISGKELSSACVWLVFKMFDKGADGRLEH
DELIEATHERLRRLPGQPESIGKFARFVQCVRGDP*
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mRNA from alignment at H-canaliculatus_F_contig10510:1340..2923-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10510.497.1 ID=mRNA_H-canaliculatus_F_contig10510.497.1|Name=mRNA_H-canaliculatus_F_contig10510.497.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1584bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10510:1340..2923- (Hapterophycus canaliculatus Oshoro5f female)
AGGTTCCCCTGAAGGACGCCCTGCTCCTGCACGAGGTCCTCGAAGACCAC
GCGGAGGACTTGGAAGACGCCCTTGGGATGTACAGCAAGGCCTCTTCCGG
CGGCGCGGTTGAGATGGTGGGCGATGGGTGGGGGTGATGGGGGAGGGGGG
GCGGCGAAGAGTAGGAATGGGCGGGGTGGGGTATGGGTCCATGTGGGGGG
AGGGACGAAGAGAACACATGTGGAACCAGTTGTTCCAAAGTGGCACACGG
CGGTCCTTGACACGTTGTACTCGCAAAAGCCTCCCGCGTTATGTGTCCGA
TCTTCGAGGCGCTTGTGGTGCTCTCACCCAAACTCCGTGGAAGCGATTTC
CTCACGCTCATCCACCCCTTCTCCAAACACGCCTCCTCTTCCGCGGACCA
CAGGCGGACTTCGCGCGCGCCGCCAAAGTCATATCCGGCAAGGAGCTCAG
CTCGGCGTGCGTGTGGCTGGTGTTCAAGATGTTCGACAAGGGGGCCGACG
GAAGGCTGGAGCACGACGAGCTGATCGAGGCCACGCACGAGAGGCTGCGC
CGCCTACCGGGGCAGCCAGAGTCCATCGGCAAGTTCGCCCGCTTCGTGCA
GTGCGTGCGTGGCGATCCCTGAAGGAATCGATCGCGTGGCGCGGCTGCCC
GTCGTTAGGACCCTTGAGGCGCGATGGGCAGATGGTACATGCGTGCACGC
GAGCGCGGCCGGTTGGCTAGCTGCGAGGGAAAAGGAAAAAAAGGGGTATG
ACGGGGGTAGGGGAGCTAGATTTTCGGGAGGGGCGGGGGGCATGATCTCG
TGGAGCCATTTGGCCGTCGGCCGCGCGTACCTTTCGATTTGAGCGCTCAA
TGTTCTCCTTGTTGAACCCCCCACCGGTATCTGGGTCGTACAAGCAGAGC
CAGCGCGGAAAAAGCGCAGTGCAGAGTGGCCGAGCACCAAGTCCGCGATT
GTAGCACAATTTCTGCATATGCTCTGGTAGGAATCTCTCTTTCGTCGTCT
CCAGTTACTTTTCTTGAAGCAATTTCTTCAAAATATGAGGCTGATTTTAA
TGCATCAAAACTTTTTCGTCAAGGAGGAAAACCTAGCTGCGGGCGTTGTT
TGCGACTCTAGCAAAGATAGCCTTCGGCGGAGGCACCGCGAATCAATGCA
GTCGCCAACAAAGCAATATTGCGCAAGCTCGTAGAGTTCCCAGTCCAGGC
TCAGGAAGGGCGTATTTTGCTGCCCTTGAGATATCTTTTGTGCGACCAAG
GGCCTCCCGGTCCACGTATCGAATCATCCGTAACATATCAAAGGAGGTCG
CACATGTATACTTCTCATCCGGACCAGCCCCTCTGCGCCAAGATTCTCCG
GCATTTGTGTGTTTCCAGCTTCTACGTGAAGGTTCAACTTTCGACGGGAT
GAATGGTTGCGTCGGGCGGTGGTCCTAGTTTCGAGCCGATGTGTCCACGC
ACGGAAAAGCAAGAGGAGAACAGGGCAGCTTAACTTCTTTGGGGGGCGCA
CAATTATCGTAGGCTAAATTACGCACGTTTTCAGAGGAACGAACGGAACG
CCCGGCACACCCTGCACATAAACGTATTTTCCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10510:1340..2923-

>mRNA_H-canaliculatus_F_contig10510.497.1 ID=mRNA_H-canaliculatus_F_contig10510.497.1|Name=mRNA_H-canaliculatus_F_contig10510.497.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=516bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10510:1340..2923- (Hapterophycus canaliculatus Oshoro5f female)
ATGTACAGCAAGGCCTCTTCCGGCGGCGCGGTTGAGATGATGTACAGCAA
GGCCTCTTCCGGCGGCGCGGTTGAGATGGCGGACTTCGCGCGCGCCGCCA
AAGTCATATCCGGCAAGGAGCTCAGCTCGGCGTGCGTGTGGCTGGTGTTC
AAGATGTTCGACAAGGGGGCCGACGGAAGGCTGGAGCACGACGAGCTGAT
CGAGGCCACGCACGAGAGGCTGCGCCGCCTACCGGGGCAGCCAGAGTCCA
TCGGCAAGTTCGCCCGCTTCGTGCAGTGCGTGCGTGGCGATCCCTGAGCG
GACTTCGCGCGCGCCGCCAAAGTCATATCCGGCAAGGAGCTCAGCTCGGC
GTGCGTGTGGCTGGTGTTCAAGATGTTCGACAAGGGGGCCGACGGAAGGC
TGGAGCACGACGAGCTGATCGAGGCCACGCACGAGAGGCTGCGCCGCCTA
CCGGGGCAGCCAGAGTCCATCGGCAAGTTCGCCCGCTTCGTGCAGTGCGT
GCGTGGCGATCCCTGA
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