mRNA_H-canaliculatus_F_contig1051.496.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1051.496.1
Unique NamemRNA_H-canaliculatus_F_contig1051.496.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1051.496.1 vs. uniprot
Match: D7FXB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXB3_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.430e-69
Identity = 149/265 (56.23%), Postives = 175/265 (66.04%), Query Frame = 1 
Query:    1 MGRASPHKVSIFVDAVSSAVGPAIAESTVEASGRRRAGGHGEEGAAVAALHSPV--AATTIARDRKKRGSKDDDLFARSPEISGRAAFRCSRSSERGQERQMQEIRRDGRPPKRDFGRGAFED---KKPEVSKRNKGG--GD--GAAAGGDCDLDKTLLWDAVEHAEARRQMLDPPKVDMAAIATIQAAFARNFPFQKHGEKFADISVRSSLKNLIMSEGPGRLIGLLSHYLYWIMLLPFSLAHKDHDDRLLLETDFYRSPRRKQ 768
            MGRASPHKVS+FVDAVSSA+GPA+ E+T    G  RA      G A A + SP   AATT ARDR     ++ DL  R+ E S R     +R+ E+  +R+       G    R    GA  D   K+  V+ + KGG  GD  G+  GG    D+ +  DAVE A+ RR+MLDPPKVDM+AIAT+QAAFARNF F KHGEKF DISVRSSLKN+IMSEGPGRLIGLLSHYLYWIMLLPF LAHKD DD +LL+ D YR   RKQ
Sbjct:  105 MGRASPHKVSVFVDAVSSAIGPAMMETTTGKDGAHRAD---TAGGAAATMPSPQSKAATTTARDRNAWRRQNGDLAMRNTETS-RGLLTNNRNFEKRAQRER------GHQHGRQANTGASGDGVSKRNPVALQQKGGVGGDVAGSDGGGGGTFDEQVPCDAVEFAQERRKMLDPPKVDMSAIATVQAAFARNFSFHKHGEKFTDISVRSSLKNIIMSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKND-YRLSMRKQ 358
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BLAST of mRNA_H-canaliculatus_F_contig1051.496.1 vs. uniprot
Match: A0A6H5K524_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K524_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.210e-57
Identity = 141/267 (52.81%), Postives = 162/267 (60.67%), Query Frame = 1 
Query:    1 MGRASPHKVSIFVDAVSSAVGPAIAESTVEASGRRRAGGHGEEGAAVAALHSPV--AATTIARDRKKRGSKDDDLFARSPEIS-----GRAAFRCSRSSERGQERQMQEIRRDGRPPKRDFGRGAFEDKKPEVSKRNKG-GGDGAAAG---GDCDLDKTLLWDAVEHAEARRQMLDPPKVDMAAIATIQAAFARNFPFQKHGEKFADISVRSSLKNLIMSEGPGRLIGLLSHYLYWIMLLPFSLAHKDHDDRLLLETDFYRSPRRKQ 768
            MG+ASPHKVS+FVDAVSSA+ P + E+T    G  RA      G A A L SP   AATT ARDR     ++ DL  R+ E S         F      ERG +R        GR               P   +++ G GGD  A G   G    D+ +  DAVE A+ RR+MLDPPKV M+AIAT+QAAFARNF F KHGEKF DISVRSSLKN+I SEGPGRLIGLLSHYLYWIMLLPF LAHKD DD +LL+ D YR   RKQ
Sbjct:  188 MGKASPHKVSVFVDAVSSAILPVMMETTTGKDGAHRAD---TAGGAAATLPSPQSKAATTTARDRNAWRRQNGDLAMRNTETSCVVLTNNRNFDKRTQRERGHQR--------GRQASTGASGDGVSKIFPAALRQSGGVGGDVVAVGDGGGGGTFDEQVPCDAVEFAQERRKMLDPPKVGMSAIATVQAAFARNFAFHKHGEKFKDISVRSSLKNIITSEGPGRLIGLLSHYLYWIMLLPFVLAHKDRDDCVLLKND-YRLSMRKQ 442
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1051.496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXB3_ECTSI1.430e-6956.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K524_9PHAE1.210e-5752.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1051contigH-canaliculatus_F_contig1051:11928..14341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size768
Cds size768
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1051.496.1prot_H-canaliculatus_F_contig1051.496.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1051 11928..14341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928702.2845376-CDS-H-canaliculatus_F_contig1051:11927..120451622928702.2845376-CDS-H-canaliculatus_F_contig1051:11927..12045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1051 11928..12045 -
1696845530.5490646-CDS-H-canaliculatus_F_contig1051:11927..120451696845530.5490646-CDS-H-canaliculatus_F_contig1051:11927..12045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1051 11928..12045 -
1622928702.3028545-CDS-H-canaliculatus_F_contig1051:12956..131021622928702.3028545-CDS-H-canaliculatus_F_contig1051:12956..13102Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1051 12957..13102 -
1696845530.564754-CDS-H-canaliculatus_F_contig1051:12956..131021696845530.564754-CDS-H-canaliculatus_F_contig1051:12956..13102Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1051 12957..13102 -
1622928702.3185804-CDS-H-canaliculatus_F_contig1051:13629..141091622928702.3185804-CDS-H-canaliculatus_F_contig1051:13629..14109Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1051 13630..14109 -
1696845530.5779402-CDS-H-canaliculatus_F_contig1051:13629..141091696845530.5779402-CDS-H-canaliculatus_F_contig1051:13629..14109Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1051 13630..14109 -
1622928702.3322568-CDS-H-canaliculatus_F_contig1051:14317..143411622928702.3322568-CDS-H-canaliculatus_F_contig1051:14317..14341Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1051 14318..14341 -
1696845530.5887601-CDS-H-canaliculatus_F_contig1051:14317..143411696845530.5887601-CDS-H-canaliculatus_F_contig1051:14317..14341Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1051 14318..14341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1051.496.1

>prot_H-canaliculatus_F_contig1051.496.1 ID=prot_H-canaliculatus_F_contig1051.496.1|Name=mRNA_H-canaliculatus_F_contig1051.496.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=256bp
MGRASPHKVSIFVDAVSSAVGPAIAESTVEASGRRRAGGHGEEGAAVAAL
HSPVAATTIARDRKKRGSKDDDLFARSPEISGRAAFRCSRSSERGQERQM
QEIRRDGRPPKRDFGRGAFEDKKPEVSKRNKGGGDGAAAGGDCDLDKTLL
WDAVEHAEARRQMLDPPKVDMAAIATIQAAFARNFPFQKHGEKFADISVR
SSLKNLIMSEGPGRLIGLLSHYLYWIMLLPFSLAHKDHDDRLLLETDFYR
SPRRKQ
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mRNA from alignment at H-canaliculatus_F_contig1051:11928..14341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1051.496.1 ID=mRNA_H-canaliculatus_F_contig1051.496.1|Name=mRNA_H-canaliculatus_F_contig1051.496.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1051:11928..14341- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAAGAGCGAGTCCTCACAAGGTTCCGCGGCGTATCACACGGTTTAG
ATCGTACTGGGCACTGTTGCACGGATACTGTAACTACACGCTCGTTCGGC
AGATGGAGTGTTTAGAACCGACAAGATCTACAGTCAGCGCGATCTGCTCC
AGATCTGCAAAACATTGCACACCCCCGATCCCCGTGTCTCCAATGCAACC
ATACCCGTAGCCGCGACTACGCAAACAAACAGGTGAGCATTTTCGTGGAC
GCCGTTTCGTCAGCCGTGGGCCCGGCCATAGCGGAATCAACAGTTGAAGC
TTCGGGAAGGCGTCGTGCTGGCGGTCATGGAGAGGAGGGGGCGGCGGTGG
CGGCTCTTCATTCGCCGGTAGCAGCCACCACCATCGCCCGTGACAGGAAG
AAGCGAGGGAGCAAAGATGACGATCTGTTTGCAAGGAGCCCTGAAATCAG
CGGCAGGGCGGCTTTTAGGTGCAGCAGAAGCAGCGAAAGGGGGCAGGAGC
GGCAGATGCAGGAGATACGGCGCGACGGACGCCCGCCAAAGAGAGATTTC
GGGCGCGGAGCTTTCGAAGACAAGAAGCCGGAGGTATCAAAGAGGAACAA
GGGCGGAGGAGATGGGGCTGCTGCAGGGGGCGACTGCGATCTGGACAAAA
CCCTGCTCTGGGATGCGGTCGAGCACGCGGAGGCAAGAAGACAGATGCTT
GACCCCCCCAAGGTGAACAGAAATGCCTGTTGATTTTGTTGCTGTACGTC
TCTTCTGACCATTACGCGCGTGCACGAGGCGGTGACATGTCTACGAAGTA
ATGTTGTCGATCAGTTGGTGGGGGGAGTCTGTAGTATGAAGGGTTGACAA
AGATTCAAGATGCCGCTGTTTTGCAACGGCCATGAAGCAAATATTCGTCA
ATACGCAGGGTGGTTGTTTGAAGGGAGCCATAGCTTCGCAAAGGTGCATG
AGGTTTTCCATGGTTCTTTGCAGGGTTGTACAAAAGCGCTTTCTGGATCT
GGGCACTGCTCGTTCTCTGACTCACAGATGTGACTCCATGTGGTTGTCTT
GCCGACGATGATTCAGGTAAGCCCGATGCCACCATGATGCACTCGGACAC
ATCGACAGGACGGGCTACTCTTCATGCACACTCGAAAGATCTCGCACTAG
CTCCGTTCATGCACAGTTTCCGAGTATTTCGAACTCATGCTGAGAGGGTG
GGTGCTTGCCTTTTCAAATTGCTTCGCCCACGCCTCTAGGTGGATATGGC
CGCCATCGCGACGATTCAAGCTGCCTTCGCTAGGAATTTTCCATTTCAGA
AGCACGGGGAAAAGTTCGCTGATATTTCCGTGCGATCGTCTCTCAAGAAT
CTCATCATGTCGGAGGGGCCCGGCAGACTAATTGGGTAAGCGGCGAAAGG
CCGGAGCAGAAAAACTTCCGGATTCATTTGGCTGTTTATCTTTCGTTATG
ATCGTCTGAAAGTAAGTTACCCCCTAGTTCCCTTGCCCATATGGTGGCGA
TGTGTTGTAGTATTTTTGTTTGCGGCTCGTCCGTTTCGCGATGTGTAAGG
CAGATATGGGTCGCTTTTCGGAGTTGAGCTTGATGTCGCTTTTATCGAGC
AGCGGTGTTCTATCTTTGTGGCAAAGCGAATACAGCGAGCCCCAGAGTTG
TAACGCTTGAGTGCAAACCTTGCGTCACCGCCTTTCGGCTTCGTCCCGCC
CAAGGGTCATTCGGAACTCTTCGGCGAGTCGGGGTATGGAAACCCGATGT
GTGGCTGCCTATGCTTGGTCCATCACCATGACGCAAGAGGCGCCTTCTCC
CGTCGAGAAGTGGGAGCCTTCAATTCGGCAAACCCCGCTTTTTTGTGCGT
CGCTGATGTGTGCATGCCGCGCGAGCTCCGAGTGTTCGTGTGGCTGACGC
TCTACCGATCGATACTTTAGACCAGATCGGCCAATACGGTGGCCTCGGTG
CATCGCACTCTCTCAGTTTGAGCCACCTCCTACACACGGATGAGTCTCCG
TCCCGCCGCCATGATGTGAATCGTTGGACTCCTACCCGACGTCCGGAGCC
ACACATAATTTACGAGGGCCCGATGCCTGGCGTTTTTCCCGTCTGGGAGG
CCAGGCTGTGGAAGTTTCCACGCTGAACTTATAGTTACCCCTTGCAGCAG
ATTTCCTACTCGTTCTAGCTCACGGGCCAAAGATCACCCTGCCTTCCCGC
GTTTCAAGTTTGAAGCTTCGAGGGTGTGATGAAGTCTCCCCCAAACCTGC
CTCGTCTACTTTGTATTCTTTGTTGCTGCTTTTGCGGGGCGACAAGGTTG
CTGTCCCATTATCTGTACTGGATCATGTTGCTGCCCTTTTCGCTGGCGCA
CAAAGACCACGACGACCGCTTGCTACTGGAGACGGACTTCTATCGTTCGC
CAAGAAGGAAACAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1051:11928..14341-

>mRNA_H-canaliculatus_F_contig1051.496.1 ID=mRNA_H-canaliculatus_F_contig1051.496.1|Name=mRNA_H-canaliculatus_F_contig1051.496.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1536bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1051:11928..14341- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAAGAGCGAGTCCTCACAAGATGGGAAGAGCGAGTCCTCACAAGGT
GAGCATTTTCGTGGACGCCGTTTCGTCAGCCGTGGGCCCGGCCATAGCGG
AATCAACAGTTGAAGCTTCGGGAAGGCGTCGTGCTGGCGGTCATGGAGAG
GAGGGGGCGGCGGTGGCGGCTCTTCATTCGCCGGTAGCAGCCACCACCAT
CGCCCGTGACAGGAAGAAGCGAGGGAGCAAAGATGACGATCTGTTTGCAA
GGAGCCCTGAAATCAGCGGCAGGGCGGCTTTTAGGTGCAGCAGAAGCAGC
GAAAGGGGGCAGGAGCGGCAGATGCAGGAGATACGGCGCGACGGACGCCC
GCCAAAGAGAGATTTCGGGCGCGGAGCTTTCGAAGACAAGAAGCCGGAGG
TATCAAAGAGGAACAAGGGCGGAGGAGATGGGGCTGCTGCAGGGGGCGAC
TGCGATCTGGACAAAACCCTGCTCTGGGATGCGGTCGAGCACGCGGAGGC
AAGAAGACAGATGCTTGACCCCCCCAAGGTGAGCATTTTCGTGGACGCCG
TTTCGTCAGCCGTGGGCCCGGCCATAGCGGAATCAACAGTTGAAGCTTCG
GGAAGGCGTCGTGCTGGCGGTCATGGAGAGGAGGGGGCGGCGGTGGCGGC
TCTTCATTCGCCGGTAGCAGCCACCACCATCGCCCGTGACAGGAAGAAGC
GAGGGAGCAAAGATGACGATCTGTTTGCAAGGAGCCCTGAAATCAGCGGC
AGGGCGGCTTTTAGGTGCAGCAGAAGCAGCGAAAGGGGGCAGGAGCGGCA
GATGCAGGAGATACGGCGCGACGGACGCCCGCCAAAGAGAGATTTCGGGC
GCGGAGCTTTCGAAGACAAGAAGCCGGAGGTATCAAAGAGGAACAAGGGC
GGAGGAGATGGGGCTGCTGCAGGGGGCGACTGCGATCTGGACAAAACCCT
GCTCTGGGATGCGGTCGAGCACGCGGAGGCAAGAAGACAGATGCTTGACC
CCCCCAAGGTGGATATGGCCGCCATCGCGACGATTCAAGCTGCCTTCGCT
AGGAATTTTCCATTTCAGAAGCACGGGGAAAAGTTCGCTGATATTTCCGT
GCGATCGTCTCTCAAGAATCTCATCATGTCGGAGGGGCCCGGCAGACTAA
TTGGGTGGATATGGCCGCCATCGCGACGATTCAAGCTGCCTTCGCTAGGA
ATTTTCCATTTCAGAAGCACGGGGAAAAGTTCGCTGATATTTCCGTGCGA
TCGTCTCTCAAGAATCTCATCATGTCGGAGGGGCCCGGCAGACTAATTGG
GTTGCTGTCCCATTATCTGTACTGGATCATGTTGCTGCCCTTTTCGCTGG
CGCACAAAGACCACGACGACCGCTTGCTACTGGAGACGGACTTCTATCGT
TCGCCAAGAAGGAAACAGGTTGCTGTCCCATTATCTGTACTGGATCATGT
TGCTGCCCTTTTCGCTGGCGCACAAAGACCACGACGACCGCTTGCTACTG
GAGACGGACTTCTATCGTTCGCCAAGAAGGAAACAG
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