mRNA_H-canaliculatus_F_contig105.486.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig105.486.1
Unique NamemRNA_H-canaliculatus_F_contig105.486.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig105.486.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 370 bits (951), Expect = 3.800e-119
Identity = 187/256 (73.05%), Postives = 206/256 (80.47%), Query Frame = 1 
Query:  136 MVRTALVALA-GLAASANALEVITPTAGLQVFAERTYTVEWTGTTSGRFEIDLYHCGSYCMEDSCGTWTTALCPYGEDGCPDNEGDYDIVIPEPESGHEGSMYKVMVMNADDESDYGCSDPFILMASTDAPDVG-QMGYSLMVTSPSAGDTAMAGEEYTVEWDYDNGLGSKVDRFAIDLYMADGDGDCGTYYTSICDKPSIGCKDSMGDYDVEIPEETPAGMYSIRVGRFEDDELFDCSGVFEVEGSD-MSMSFRF 894
            M RT  VALA  +  +ANALEV+TP+A L V A+RTYTVEWTG  SGRFEIDLYHCGS CMEDSCG W TALCPYGE+GCPDNEGDYDIV+PEP SG   S YKV VM+  DE    CSD F LMAS DAPD G + GY L VTSP+ GD+A AGEEYTVE+DYDNG+GSKVDRF+IDLYMADGDGDCGTY TSICDKPSIGCKDSMGDYDVEIP +T AG Y IRVGRFED+EL+ CSG F + G D  SMS+ F
Sbjct:    1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDESMSYDF 256
[Close]
BLAST of mRNA_H-canaliculatus_F_contig105.486.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 3.300e-116
Identity = 175/255 (68.63%), Postives = 208/255 (81.57%), Query Frame = 1 
Query:  136 MVRTALVALA-GLAASANALEVITPTAGLQVFAERTYTVEWTGTTSGRFEIDLYHCGSYCMEDSCGTWTTALCPYGEDGCPDNEGDYDIVIPEPESGHEGSMYKVMVMNADDESDYGCSDPFILMASTDAPDVGQMGYSLMVTSPSAGDTAMAGEEYTVEWDYDNGLGSKVDRFAIDLYMADGDGDCGTYYTSICDKPSIGCKDSMGDYDVEIPEETPAGMYSIRVGRFEDDELFDCSGVFEVEGSD-MSMSFRF 894
            M RTA  A+A G+ ++ANALEV++P  G+ V A+R YTVEWTGTT+GRFEIDLY+C S+CM+D CG W TALCPYG DGCPD+ GDYDI++PEP SG   S YKVMV NA+DESD GCSD F L+AS DAP+ G+MGYSL VTSPS GDTAMAGE YTVEWDY+NG GS  DRFA+DLY+  G GDCGTY T++CD+PSIGC DS GDYDVEIP +TPAGMYSIRVG F+D+ ++DCS  FEV+ SD M++S RF
Sbjct:    1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGT-SSGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSDDMTISMRF 254
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BLAST of mRNA_H-canaliculatus_F_contig105.486.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 345 bits (886), Expect = 1.540e-109
Identity = 171/254 (67.32%), Postives = 197/254 (77.56%), Query Frame = 1 
Query:  136 MVRTALVALA-GLAASANALEVITPTAGLQVFAERTYTVEWTGTTSGRFEIDLYHCGSYCMEDSCGTWTTALCPYGEDGCPDNEGDYDIVIPEPESGHEGSMYKVMVMNADDESDYGCSDPFILMASTDAPDVGQMGYSLMVTSPSAGDTAMAGEEYTVEWDYDNGLGSKVDRFAIDLYM-ADGDGDCGTYYTSICDKPSIGCKDSMGDYDVEIPEETPAGMYSIRVGRFEDDELFDCSGVFEVEGSDMSMSFR 891
            M RTA  ALA G+  +ANALEV++P AG+ V A+RTYTVEWTGT+  RFEIDLY+CGS+CMED CG W TALCPYG DGCPD +GDYDIV+PEP +G   S YKV+V +++DES  GCS  F L+ASTDAP  G++GYSL VTSPS GDTAMAG  YTVEWDY+NGLGS  DRFAIDLY    G GDCGTY  ++CDKPSIGC DS GDYDVEIP +TPAGMYS+RVG F DD +FDCS  FE+      MS R
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGT-SSGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSMR 253
[Close]
BLAST of mRNA_H-canaliculatus_F_contig105.486.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 1.560e-108
Identity = 172/254 (67.72%), Postives = 199/254 (78.35%), Query Frame = 1 
Query:  136 MVRTALVALA-GLAASANALEVITPTAGLQVFAERTYTVEWTGTTSGRFEIDLYHCGSYCMEDSCGTWTTALCPYGEDGCPDNEGDYDIVIPEPESGHEGSMYKVMVMNADDESDYGCSDPFILMASTDAPDVGQMGYSLMVTSPSAGDTAMAGEEYTVEWDYDNGLGSKVDRFAIDLYMADGDGDCGTYYTSICDKPSIGCKDSMGDYDVEIPEETPAGMYSIRVGRFEDDELFDCSGVFEVEGSDMSMSFRF 894
            M RTA  ALA G+  +ANALEV++P AG  V A+  YTVEWTG TSGR++IDLY+CGS CMED CG W TALCPYG+DGCPD +GDYD+V+PEP  G   S YKVMV ++ DESDYGCS  F L+AST+APD   MG  + VTSPS GDTAMAG EYTVE+DYDNGLGS V+RFAIDLY + G GDCGTY T+ICDKPSIGCKDS GDYDV IP  T +GMYSIRVG FEDD+++ CS  FE+ G + SMS RF
Sbjct:    1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGT-SSGYKVMVTDSSDESDYGCSGDFTLIASTEAPDATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGE-SMSVRF 252
[Close]
BLAST of mRNA_H-canaliculatus_F_contig105.486.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 336 bits (861), Expect = 1.200e-105
Identity = 175/267 (65.54%), Postives = 200/267 (74.91%), Query Frame = 1 
Query:  136 MVRTALVALA-GLAASANALEVITPTAGLQVFAERTYTVEWTGTTS-GRFEIDLYHCGSYCMEDSCGTWTTALCPYGEDGCPDNEGDYDIVIPEPESGHEGSMYKVMVMNADDESDYGCSDPFILMASTDAPDVG-QMGYSLMVTSPSAGDTAMAGEEYTVEWDYDNGLGSKVDRFAIDLYMADGDGDCGTYYTSICDKPSIGCKDSMGDYDVEIPEETPAGMYSIRVGRFEDDELFDCSGVFEVEGSD-----------MSMSFRF 894
            M RT  VALA G+  +ANAL+V TP+ GL V A+RTYTVEWTGT+S  RFEIDLY+CGS CMED CG W TALCPYGEDGCPDNEGDYDIV+PEP  G  GS YKV V +  DE D  CSD F L+AS++AP VG + G +L VTSP++GD A    EYTVE+DYDNG+GS VDRFAIDLY ADG+GDCGTY  SICDKP+IGCKDSMGDYDVEIP +T AG Y IRV RFEDD L+ CSG F +E  D            S+S+RF
Sbjct:    1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267
[Close]
BLAST of mRNA_H-canaliculatus_F_contig105.486.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 1.020e-103
Identity = 171/257 (66.54%), Postives = 194/257 (75.49%), Query Frame = 1 
Query:  136 MVRTALVALA-GLAASANALEVITPTAGLQVFAERTYTVEWTGTTSG-RFEIDLYHCGSYCMEDSCGTWTTALCPYGEDGCPDNEGDYDIVIPEPESGHEGSMYKVMVMNADDESDYGCSDPFILMASTDAPDVGQMGYSLM-VTSPSAGDTAMAGEEYTVEWDYDNGLGSKVDRFAIDLYMADGDGDCGTYYTSICDKPSIGCKDSMGDYDVEIPEETPAGMYSIRVGRFEDDELFDCSGVFEVEGSD-MSMSFRF 894
            MVRT  VALA G+   A+ALEV+TP AG  V + R YTVEW+GT S  RFEIDLY+C S CMED CG W TALCPYGEDGCPDNEGDYDIV+PEP SG  GS YKV V + DDE    CSD F LMA  DAP     G   + VTSPS GD+A AGEEYTVE+DYDNGLGS V RFAIDLY A G GDCGT+  ++CDKP+IGCKDSMGDYDVEIPE+  AGMY+IRVG FED+ ++ CS  FE+ G+D  SMS+RF
Sbjct:    2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDSSMSYRF 258
[Close]
BLAST of mRNA_H-canaliculatus_F_contig105.486.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 319 bits (817), Expect = 4.820e-99
Identity = 159/236 (67.37%), Postives = 182/236 (77.12%), Query Frame = 1 
Query:  178 SANALEVITPTAGLQVFAERTYTVEWTGTTSG-RFEIDLYHCGSYCMEDSCGTWTTALCPYGEDGCPDNEGDYDIVIPEPESGHEGSMYKVMVMNADDESDYGCSDPFILMASTDAPDVGQMGYSLM-VTSPSAGDTAMAGEEYTVEWDYDNGLGSKVDRFAIDLYMADGDGDCGTYYTSICDKPSIGCKDSMGDYDVEIPEETPAGMYSIRVGRFEDDELFDCSGVFEVEGSDMS 879
            +A+ALEV+TP  G  V A R YTVEWTGT S  R+EIDLY+CGS CMED CG W TALCPYGEDGCPDNEGDYDIV+PEP SG  GS YKV V + DD+    CSD F LMA  +AP  G  G   + VTSPS+GD+A AGEEYTVE+DYDNGLGS V RFAIDLY A G GDCGT+  ++CDKP+IGCKDSMGDYDVEIPE+  AGMY+IRVG FEDD ++ CS  FE+ G+D S
Sbjct:    4 AASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDS 239
[Close]
BLAST of mRNA_H-canaliculatus_F_contig105.486.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 1.320e-85
Identity = 151/235 (64.26%), Postives = 176/235 (74.89%), Query Frame = 1 
Query:  136 MVRTALVALA-GLAASANALEVITPTAGLQVFAERTYTVEWTGTTS-GRFEIDLYHCGSYCMEDSCGTWTTALCPYGEDGCPDNEGDYDIVIPEPESGHEGSMYKVMVMNADDESDYGCSDPFILMASTDAPDVG-QMGYSLMVTSPSAGDTAMAGEEYTVEWDYDNGLGSKVDRFAIDLYMADGDGDCGTYYTSICDKPSIGCKDS----MGDYDVEIPEETPAGMYSIRVGRF 819
            M RT  VALA G+  +ANAL+V TP+ GL V A+RTYTVEWTGT+S  RFEIDLY+CGS CMED CG W TALCPYGEDGCPDNEGDYDIV+PEP SG  GS YKV V +  DE D  CSD F L+AS++AP VG + G +L VTSP++GD A    EYTVE+DYDNG+GS+VDRFAIDLY ADGDGDCGTY  SICDKP+IGCKDS     G + V+       G +S+ V R+
Sbjct:    2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRY 236
[Close]
BLAST of mRNA_H-canaliculatus_F_contig105.486.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 7.400e-84
Identity = 144/254 (56.69%), Postives = 170/254 (66.93%), Query Frame = 1 
Query:  136 MVRTALVALA-GLAASANALEVITPTAGLQVFAERTYTVEWTGTTSGRFEIDLYHCGSYCMEDSCGTWTTALCPYGEDGCPDNEGDYDIVIPEPESGHEGSMYKVMVMNADDESDYGCSDPFILMASTDAPDVGQMGYSLMVTSPSAGDTAMAGEEYTVEWDYDNGLGSKVDRFAIDLYMADGDGDCGTYYTSICDKPSIGCKDSMGDYDVEIPEETPAGMYSIRVGRFEDDELFDCSGVFEVEGSDMSMSFRF 894
            M RTA  ALA G+  + NALEV +P AG  + A  + TVEWTGT+SGRF+IDLY+CGS CMED CG W TALCPYG+DGCPD +GDYD+V+PEP  G   S YKVMV ++ DESD GCS  F L+AS                                 +D+DNG GS V+RF+IDLYM+ G GDCGTY TSICDK SIGCKDS GDYDV IP +T +GMYSIRVG FED ++F CS  FE+ G + SMS RF
Sbjct:    1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGT-SSGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGESSMSVRF 253
[Close]
BLAST of mRNA_H-canaliculatus_F_contig105.486.1 vs. uniprot
Match: A0A6H5KR87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 6.490e-79
Identity = 127/194 (65.46%), Postives = 146/194 (75.26%), Query Frame = 1 
Query:  313 MEDSCGTWTTALCPYGEDGCPDNEGDYDIVIPEPESGHEGSMYKVMVMNADDESDYGCSDPFILMASTDAPDVGQMGYSLMVTSPSAGDTAMAGEEYTVEWDYDNGLGSKVDRFAIDLYM-ADGDGDCGTYYTSICDKPSIGCKDSMGDYDVEIPEETPAGMYSIRVGRFEDDELFDCSGVFEVEGSDMSMSFR 891
            MED CG W TALCPYG DGCPD +GDYDIV+PEP  G   S YK+MV +++DES  GCS  F L+ASTDAP  G++GYSL V SPS GD AMAGE YTVEWDY+NGLGS  DRFAIDLY    G GDCGTY  ++CDKP+IGC DS GDYDVEIP +TPAGMYS+RVG F D+ +FDCS  FE+      +S R
Sbjct:    1 MEDDCGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGT-SSGYKIMVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLYTYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIVNDSTDLSMR 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig105.486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FYL2_ECTSI3.800e-11973.05EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JY62_9PHAE3.300e-11668.63GPI-anchored domain-containing protein n=2 Tax=Ect... [more]
D7G3F0_ECTSI1.540e-10967.32EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI1.560e-10867.72Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JRG9_9PHAE1.200e-10565.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFT9_9PHAE1.020e-10366.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI4.820e-9967.37EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FH21_ECTSI1.320e-8564.26Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KP11_9PHAE7.400e-8456.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR87_9PHAE6.490e-7965.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig105contigH-canaliculatus_F_contig105:43665..50172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons6
Model size2603
Cds size762
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig105.486.1prot_H-canaliculatus_F_contig105.486.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig105 43800..48466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928700.3647504-UTR-H-canaliculatus_F_contig105:43664..437991622928700.3647504-UTR-H-canaliculatus_F_contig105:43664..43799Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig105 43665..43799 +
1696845529.602698-UTR-H-canaliculatus_F_contig105:43664..437991696845529.602698-UTR-H-canaliculatus_F_contig105:43664..43799Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig105 43665..43799 +
1622928700.4962537-UTR-H-canaliculatus_F_contig105:48466..501721622928700.4962537-UTR-H-canaliculatus_F_contig105:48466..50172Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig105 48467..50172 +
1696845529.673839-UTR-H-canaliculatus_F_contig105:48466..501721696845529.673839-UTR-H-canaliculatus_F_contig105:48466..50172Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig105 48467..50172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928700.3815088-CDS-H-canaliculatus_F_contig105:43799..439001622928700.3815088-CDS-H-canaliculatus_F_contig105:43799..43900Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 43800..43900 +
1696845529.6112144-CDS-H-canaliculatus_F_contig105:43799..439001696845529.6112144-CDS-H-canaliculatus_F_contig105:43799..43900Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 43800..43900 +
1622928700.3964598-CDS-H-canaliculatus_F_contig105:46260..463421622928700.3964598-CDS-H-canaliculatus_F_contig105:46260..46342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 46261..46342 +
1696845529.6234035-CDS-H-canaliculatus_F_contig105:46260..463421696845529.6234035-CDS-H-canaliculatus_F_contig105:46260..46342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 46261..46342 +
1622928700.4121528-CDS-H-canaliculatus_F_contig105:46842..469681622928700.4121528-CDS-H-canaliculatus_F_contig105:46842..46968Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 46843..46968 +
1696845529.6376753-CDS-H-canaliculatus_F_contig105:46842..469681696845529.6376753-CDS-H-canaliculatus_F_contig105:46842..46968Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 46843..46968 +
1622928700.4270794-CDS-H-canaliculatus_F_contig105:47349..475171622928700.4270794-CDS-H-canaliculatus_F_contig105:47349..47517Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 47350..47517 +
1696845529.648764-CDS-H-canaliculatus_F_contig105:47349..475171696845529.648764-CDS-H-canaliculatus_F_contig105:47349..47517Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 47350..47517 +
1622928700.4392946-CDS-H-canaliculatus_F_contig105:47925..480611622928700.4392946-CDS-H-canaliculatus_F_contig105:47925..48061Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 47926..48061 +
1696845529.657251-CDS-H-canaliculatus_F_contig105:47925..480611696845529.657251-CDS-H-canaliculatus_F_contig105:47925..48061Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 47926..48061 +
1622928700.455287-CDS-H-canaliculatus_F_contig105:48317..484661622928700.455287-CDS-H-canaliculatus_F_contig105:48317..48466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 48318..48466 +
1696845529.6655724-CDS-H-canaliculatus_F_contig105:48317..484661696845529.6655724-CDS-H-canaliculatus_F_contig105:48317..48466Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig105 48318..48466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig105.486.1

>prot_H-canaliculatus_F_contig105.486.1 ID=prot_H-canaliculatus_F_contig105.486.1|Name=mRNA_H-canaliculatus_F_contig105.486.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=254bp
MVRTALVALAGLAASANALEVITPTAGLQVFAERTYTVEWTGTTSGRFEI
DLYHCGSYCMEDSCGTWTTALCPYGEDGCPDNEGDYDIVIPEPESGHEGS
MYKVMVMNADDESDYGCSDPFILMASTDAPDVGQMGYSLMVTSPSAGDTA
MAGEEYTVEWDYDNGLGSKVDRFAIDLYMADGDGDCGTYYTSICDKPSIG
CKDSMGDYDVEIPEETPAGMYSIRVGRFEDDELFDCSGVFEVEGSDMSMS
FRF*
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mRNA from alignment at H-canaliculatus_F_contig105:43665..50172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig105.486.1 ID=mRNA_H-canaliculatus_F_contig105.486.1|Name=mRNA_H-canaliculatus_F_contig105.486.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6508bp|location=Sequence derived from alignment at H-canaliculatus_F_contig105:43665..50172+ (Hapterophycus canaliculatus Oshoro5f female)
TGTTCCTGCCACCGCCCACTCGGCTCACTCTCGCCACTTGCCACTCTATC
TTCTGCCAACCAAACGAGAAAGACGCAACGCACAGTCAAGCGCTAGACAC
TTTGAAGCAGCCCCAGCTCTTTCATCCCCGAAAAGATGGTTCGCACTGCT
CTCGTTGCTCTGGCCGGGCTGGCGGCTTCCGCCAACGCCCTCGAGGTGAT
CACCCCCACCGCGGGACTTCAGGTTTTCGCTGAGAGGTGAGAGGACAAAA
AACGGGGATGCACCGCTGTAGCAGACGAGAGTCGGAGGAGAGTGTGTACT
GAGGCACCTGAGTCCTGAGCCCTCGGTGAGCCACCGCCCGCTATGCCGCT
CATAGACAGCCGGTGCTCGTGTCCCACTGTCCACGCGGGAGCTCGTACTC
GGGGAACTCTGTTGTGTTCTGGGAATTGTGGGACCCGATGGTCGGGTTCT
TTTCCCGCCTACGGCAGCAGCATCTAGCCAGACGAATCTCTCTCTCCGCA
ACAAACGGCGCGACCAGCTTTGTATAACCAGAGGTTGATGGAAAGCGAAG
ACGGACGCGGCCAAACGTCCCGCCCCCCCCACCCGACGCGCTTGGGAGGA
GCACGCGACCGGCTCACGCTCCTCGTGCCTCGCGTGTCGGGCCGGACCGT
AGCTTTTGTCGAAACAGGATGCGGATGCTCTTGCGGCTACCGTTGCGGGA
TTCGATTCGGTTTTCGTGTGGATTTTTTTGCTCCTGTTTCTTTTTTTTAG
GCTCTTTCCCGACTCACTTTCAAAAACGATTTGGCGGCTTGGCAGCCTGT
CCTCGCGCCGTATTTTGAGGGTATGGCACGTTGCCCTCCCGTTCCTGCGC
TTCGCGCCTCGGCGTGAACTCTCTGTACATCGTCGGGTGGGGCTCCTTCC
CTCTAACCTTGGGGCAGTGCCGAGGGGAGCTGTCGGAAGGAGTTCGTTCT
TAATTCCGATTTCGGCATAGAAAGATAGAAAGCCCGCCTACGGATAAACG
GAGGGCGCGAGCTCGCCCTTTCAGCGGCGAGTTGCTCGACTCCGGACGTT
CACACCCTACTGGCTCCAGTTGCATCCTCTGGGCTCGCTCGCCTCGACGG
TTACCACCGCACGCGGCGGGTGGGCAGCTAGGCCGATGAAGCAGGCGACC
CTTGCACCCCACGTAGAGTCGTTGATTGCCTGACGTGTTGGCAAGCTGAG
CGCCGACGGTAGTCGTTGCAACGTAGGGAGGAATTGCTGCCTGCTTTTCG
GGGACGAGACAACCTTGTTCCGATGCAATCTCGCGGATGAACTTGAGCGT
ATTTGCGCCTAATTTTAAAATTGTTTCTCATTTTTTTTGCAGTGTCGAGA
TATATAGATCACGTGGGGAAGGGCACGAGCGTCTGCGACGCAGCGCCGCG
CCCTAACCCGACGCGCCAATGGCGCGACATGGCGCGACATAAGTGGTTCC
GCCCCGGATGACGATGAGACCGGACGCGTCTGGCCGCCTCTGACCTCACT
TTCACGTAGCTTCTTTTATGAAAGCAGTGTTCCGGGATCAGTGAGCAACG
GCTTTTTATCTCTTCGTGTGCCCTCTTCGAACAAGAGAAATCCAAACAAA
GGAACGAGCTCCTTTTTTCTGGCCTTGCACATCTATCTGCATCCCCAGCG
ACCGACAGAGACCACCAGTTGCTTCTCCTTTCCGCCCTCCTTCTCCCCAC
GAGACCGCCACCACCGGCCGTCAGAGATGGCACTAGAGCCGCGCCCCGGA
CCCTCCGCATCCTTCGTCCCTGTCCGTGTAGTTGACTAGGCCGAAAGCGT
CCAACTACTTGTAACCAGTTCTGCCTTTACTACAACCTCTCCAACGCGCT
TTAAACCCGAATTTTCTTCCCCGCATGATGCTCCAAACCCTGAGAAGCGA
TGCCTCGGGTCCGTCTTTCTTCGTACGGCTACGTCACCAGCAGGCAGACT
AGCCGTGGGGGTAGGGTTGGTACCATGATCTTCCTCTCCTCTCCAGTACG
CCGATGCCACCGCACAGGGAGCGCAAGCCCGTGTTGCTCCCGGATCATGC
ATGTGATATCCACGTGGGGCAGATGTGCATCTTCACTTCCACTTGTTCCG
AAACTTGTCACGTTCACTATCTGCACATATCCTACACGGGCATCCCCTCG
AAGTTATGCTTGACTTTCTTTCTGGATCCACGCGGGGTGAGGAGGGTGTC
CAGCGGTGGCCACGACGTCAGGTGCATCAACTGGAAAAAGCGGGTGGCGG
GAAGAGGCTGAAAAAAAACTTCCGAGATGAACAGAGAAGAAGGAGAAACG
AATCCACTTCCTGTTTGGTCCGTCCTCTCGTGCACGCTCGCTTTGCGGCG
ATTGCTTGCGCCACAAACGAAAGGACCTTTTCGGCGGGAAGACGGCAGTC
CGTTGCTTGCGCTCACGGCAGTCCGCAGACGTTGTCCGTAAAAGGCACGC
GACAAACGAACGCGATTTCAACCCCTACCACGAAAATGATGTCAGGCCCG
GACGAAAACGTAGCGCTGATGTGGTACCCGCACTCCAAATCTTTTCTTTA
CACCTTCTCACTCTCCACCGCGTCCGCGTGTCCACCCCCACTTCAGGACG
TACACCGTTGAGTGGACTGGAACCACCAGCGGCCGCTTCGAGATCGACCT
CTACCACTGCGGCTCCTACTGTATGGAGGTACGTACGAAACACGTCCTCT
CTCATCTTGCCTTTTTTTCCCCGCTGTTGATGATGTGTGGTGTGCATATG
CGGAAGCTTCAACTAGATACCCACCGGGTGTAGTGGCACGAACTACCGTT
GTGCGGGTGCCGGAAAACTGGAAGGCGGAGAGTGAAAGTGGTGGCCGTCA
AAAGAACACGGTGTGCATTTCGCTGCTCGGCTACCGCAGTCAGAGGCCTA
CCTTCAACCAGCGTGTCGTGTTTCTTCCATCCTGGGGCATGAACACGGGA
CAGTCTCGTTGCTACTGGGAGATGTTCTGATTTGATGGGTGCAGGAGGTT
CCATGTCCACAAGCCACAGACGAACAGCTACACCAGCACACGGCCACAAA
GCAGGATCACCCCAACTGCCCTCCTTCCATCCAACCGAAGAGGAGCATCA
CAAGGCACCGCTGCTGCGGCCCTAAGCCTCGTTCTCCCCGCCGCCCCCCC
AACCGCCGCGAAATCTTTCCAACAACAGGACTCGTGCGGCACCTGGACCA
CCGCCCTGTGCCCCTACGGCGAGGACGGCTGCCCCGACAACGAGGGCGAC
TATGACATCGTCATCCCCGAGCCCGAGTCGGGCCACGAGGGCTCCATGTA
CAAGGTGGGTCCCCAACCCCCCCGCTCAACCCGACGGGATCGGGACGAAC
GCTCCTTGCAAACCGCGGGGTTACCACCTACGCCGGCGCGCGCTCGAGGA
GGAGAGTTGGGAGGCTTTCTGACCGCGGGCGCGTTTCCCGCGAGCCCTTT
GTCCGCCACACTCTCCCATGCGTTGCGTAGTTCAGGTAGCATGGCACCGT
AGTTTCGTTTCGATCCTGTCTGGGGGAGGAGGGTCCGCAGTCCCAACCGT
CGGAGCAGAAGAGGCTCGGATTCCTCGGAATCCTTGGTCCATGGCCCTGG
CCGCCCCGCGCCGACCGCCTTGGTTTCTTGCTCCGTGTCCGCTCCGTGTC
GCGTTTTTTGTCGACCCTCGACGGAAATGTCTCAGGTGATGGTGATGAAC
GCCGACGACGAGTCCGACTACGGATGCTCGGACCCCTTCATCCTTATGGC
CTCCACCGACGCACCCGACGTGGGACAGATGGGCTACTCGCTCATGGTCA
CCTCTCCCTCGGCGGGCGACACCGCCATGGCCGGAGAGGAGTACACCGTC
GAGGTCAGTCGTGTATAGGAAGGCAGCCTTCCCCCCGCTCGGAGAGACTC
GGAGAGAGATAACGTTTTTATTGTTCTGGACTGCTGGATGGTCCAAGTGG
TGAATGCACGCGCTTCCTACAGTACACTTTCGGGAGGAAAAGCAGAGCCC
GCTACCCGGGTGTGTTGCCTGGGAGCGAGCGCTGCTGGGGGTCATCGTGG
GGCGGGAGGGACATGCTTGCGTTCTGCCCCTGGCCCGTTCCGTGTCTCCA
CTCCAATCCCCGGACAAATGCCTTCCGGCTGAAGACGGGAGCACTCTCAG
TGGCGCAGCTCTAGGAGTTCGGCTGGCTCACTCCCCCTCACCCCGCCCCC
GTCGTTCTCCCTCCAACCGTCACACGTCGAAACGCACGACTGGTGATGCT
CTTGGGAACAGTGGGACTACGACAACGGCCTCGGCTCCAAGGTGGACCGC
TTCGCGATCGACCTCTACATGGCGGACGGAGACGGCGACTGCGGCACCTA
CTACACCTCGATCTGCGACAAGCCCTCCATCGGCTGCAAGGACTCGAGTA
AGTTCATGGCGTGGAGTGTGTCGATCCCTCTCGCCCGTTGGCGTGCGGTG
TAAAACTGAAACGACGGCGTCTCTTTCCGCCGCTGACGACCGATTCGAAT
GGCCAACCCAGCTAACCACACTTGCCAAAGTAGTGGATATCGCCGCAAAG
CATGAGGGGTTCCCAGGACTGCTGGTCGACGAATGAAGAAATTCCCTACT
GACGCCCTCAACTTGACCCCTCCACGTGGCCCCTCCCGCCTCTCGTTTTT
CAGTGGGCGACTACGACGTTGAGATCCCCGAGGAGACCCCGGCGGGCATG
TACTCGATCCGCGTCGGCCGCTTCGAGGACGACGAGCTGTTCGACTGCTC
CGGCGTATTCGAGGTGGAAGGATCGGACATGAGCATGTCTTTCCGCTTCT
AAATGAGAACGAAACTCATTGCATGACACACGTCTCCCCCGGACGGGCGA
CTCCTTACGAAGGCCCCTAACAGGAGGAGGCGGAGGGGCGAAGAAGTGAT
TTTCGTCTAGATGACCCTGTCGTTGTTGGTTTCTTTTGGTTTTTCCTCCC
TCTGGTGCAATACGACGACAGACGGATCGTGCGCGAGTGTCGAAACGCAT
TCATCAGCTCAAAATAATCGGTTTGTGTCTTGGTTCTCCTGCTTCCACTG
CTGAATTGGAGAGAGGGAAAACAGCGGCGGGTGAGAGTTGGGGCTGGTTT
GCTCGGCGAGGACGGCCTAGCTCTTTCTTCGAAAACTCGGCTCTCTGCTC
ATGTTGGTATTTAGCGTATTTAGCATGTTCGTGTTATGTGTCGGTGTAGG
GAAGGTGCTCCATTAGGCGGGTTGTTGGTTTGAACAATGGACTGACGTCG
GGAAAGAAAAATGGGGAGGTTTGACACGTCGGAGGAGGACTCGGAGCACA
CCTGCTCCCCGCCCCTTTGCTCCTCGCGTCCTTTTTCTTGGTCGTACACG
GTCCTTCCGCCCTCGCTGCTGTATACTCTTGCCTTCGTGTTTTTGTCCTG
CCTCATCGTGGTGGGTCACCTGACGCCGAAGGATTACTCTCGGTCTCGGG
GTGCGCCGTTCGATCGCGTGGTGACGTTAGCATGCGCAAGTGCAGCGGGT
CCGAACGACCCTCGTCACGTTTTGATATGACTGTTGTAGTGGCCGTCTAG
TGAGTCGTCGGGCAACTTCCGCAGTTGGATGAAGACGGCCTCGATAATGG
AGAGAAAATGGAAAGGGCCGCCTACATTCGCTAGGCGAGCAAGACAGATA
CTTTTGAGTCAACCTTCCCTCCGCCGCTCTATCGCGATTTGTGTAACACT
AGTTCTTGTTTCACGTCTTGTGAGAAATTTTGGGCGGGGGATAGGGCCAG
GGTAGACATCATCAATAATTTGTATTGTTACACAGCATGCACGAAAACTC
TGTCGGGCAAGGACATGCCGCCCACCGTCATGCGCGGCGGGTTGTGTTGT
TTGTCTGATTGATTCCGGTGTCTTCGTTGTGCCTGGCGCCTTAATCCCGT
CCGGTCTCGGGGGCCCTGTCGACGTCGTAAGCTCTCCCGAAGCTTGTGTC
GATTTCTGGTTCCCGCGTACATTTGGAGGCCGGTCGGCAGCCCTTTCGTC
GTCCGGGTGCCTTTTCTTACCCTTCTTCCATTCTTCAATTTCATTGGTTC
GCGTTCCAGGCGCGTGCGTGTGTATGTGTACTGTGATTGGTGTGCCGTAG
CGCGCGCGCATCTCTGGCCCCGAGCTTGTCACGGGAAGATAGACGCGGCG
ATGGCCGTCTCTTGGGACGGATAGGGTAATCGCGGGAGAGACAGACAGAC
AGACAGCCTTGTGCGGATCTGTCGGCGGGGGTTGAGTGATGCTCGGTGGG
CAGCCGCTTTCCCTTCGAGCCTCCTTTGCTTCGTATGGAAAGGCTGCTCA
CGGCAAAATACCGAGAGGTTCGACCGCGAGTGACTCTGTTCTAAAGACAA
ATATCAACTAGGTGTGTTGAACGACTATTTGTAAGGTACAGAGGGGTGAA
CAAAGCGTTACTTACTTACTGTAGTCAATACATACCTACATTGGGAACTC
GACAGAAACCTCGAGGTACGTCCCACATGACTTTCAGGAGGTGTTGCTGC
GGTGTTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig105:43665..50172+

>mRNA_H-canaliculatus_F_contig105.486.1 ID=mRNA_H-canaliculatus_F_contig105.486.1|Name=mRNA_H-canaliculatus_F_contig105.486.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1524bp|location=Sequence derived from alignment at H-canaliculatus_F_contig105:43665..50172+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTCGCACTGCTCTCGTTGCTCTGGCCGGGCTGGCGGCTTCCGCCAA
CGCCCTCGAGGTGATCACCCCCACCGCGGGACTTCAGGTTTTCGCTGAGA
GATGGTTCGCACTGCTCTCGTTGCTCTGGCCGGGCTGGCGGCTTCCGCCA
ACGCCCTCGAGGTGATCACCCCCACCGCGGGACTTCAGGTTTTCGCTGAG
AGGACGTACACCGTTGAGTGGACTGGAACCACCAGCGGCCGCTTCGAGAT
CGACCTCTACCACTGCGGCTCCTACTGTATGGAGGACGTACACCGTTGAG
TGGACTGGAACCACCAGCGGCCGCTTCGAGATCGACCTCTACCACTGCGG
CTCCTACTGTATGGAGGACTCGTGCGGCACCTGGACCACCGCCCTGTGCC
CCTACGGCGAGGACGGCTGCCCCGACAACGAGGGCGACTATGACATCGTC
ATCCCCGAGCCCGAGTCGGGCCACGAGGGCTCCATGTACAAGGACTCGTG
CGGCACCTGGACCACCGCCCTGTGCCCCTACGGCGAGGACGGCTGCCCCG
ACAACGAGGGCGACTATGACATCGTCATCCCCGAGCCCGAGTCGGGCCAC
GAGGGCTCCATGTACAAGGTGATGGTGATGAACGCCGACGACGAGTCCGA
CTACGGATGCTCGGACCCCTTCATCCTTATGGCCTCCACCGACGCACCCG
ACGTGGGACAGATGGGCTACTCGCTCATGGTCACCTCTCCCTCGGCGGGC
GACACCGCCATGGCCGGAGAGGAGTACACCGTCGAGGTGATGGTGATGAA
CGCCGACGACGAGTCCGACTACGGATGCTCGGACCCCTTCATCCTTATGG
CCTCCACCGACGCACCCGACGTGGGACAGATGGGCTACTCGCTCATGGTC
ACCTCTCCCTCGGCGGGCGACACCGCCATGGCCGGAGAGGAGTACACCGT
CGAGTGGGACTACGACAACGGCCTCGGCTCCAAGGTGGACCGCTTCGCGA
TCGACCTCTACATGGCGGACGGAGACGGCGACTGCGGCACCTACTACACC
TCGATCTGCGACAAGCCCTCCATCGGCTGCAAGGACTCGATGGGACTACG
ACAACGGCCTCGGCTCCAAGGTGGACCGCTTCGCGATCGACCTCTACATG
GCGGACGGAGACGGCGACTGCGGCACCTACTACACCTCGATCTGCGACAA
GCCCTCCATCGGCTGCAAGGACTCGATGGGCGACTACGACGTTGAGATCC
CCGAGGAGACCCCGGCGGGCATGTACTCGATCCGCGTCGGCCGCTTCGAG
GACGACGAGCTGTTCGACTGCTCCGGCGTATTCGAGGTGGAAGGATCGGA
CATGAGCATGTCTTTCCGCTTCTAATGGGCGACTACGACGTTGAGATCCC
CGAGGAGACCCCGGCGGGCATGTACTCGATCCGCGTCGGCCGCTTCGAGG
ACGACGAGCTGTTCGACTGCTCCGGCGTATTCGAGGTGGAAGGATCGGAC
ATGAGCATGTCTTTCCGCTTCTAA
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