mRNA_H-canaliculatus_F_contig105.484.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig105.484.1 vs. uniprot
Match: D7FGY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY9_ECTSI) HSP 1 Score: 739 bits (1907), Expect = 1.860e-236 Identity = 618/1476 (41.87%), Postives = 794/1476 (53.79%), Query Frame = 1
Query: 43 SSRSVSSAGSFETLTSAGEGSLSLGMDFNGGSFLADVAGADA------EKNAEVHEGLGMVETTLLDSWKVLPWQARLCPRAIEERELSRRTSALEEENLRVQDWRQKQQILATSAAREEERIVSGWWKRAAEKLWKLQSQRRESHEGLAKRHDAKLAALENQRTALLSTGYGAELATLDSMDQSRLREHLRQMETLLSFVFSDNGL-EEGQRATFPKARSTASSEKPFEAISDETIASIAFATPGNVTLPPGRRASLSPSSPPLQTAPAAAVAASETNASQTPSEAREAEHLRATASFERISTQTQSELERVSLHTSAMAAMAETFHRRRQSLIGLLYGGLTEAYRDMRAGARRAFVWECAADIGRIRQIGFSSSRGGGH-GXXXXXXXXXXXXXXXXXXDAEKCDV------SGDGTVPDVNNSKDIAISTGNRSNSSSSGGVLDPAAELKVESEPTTGRSPEAAGCRERIRATRALRSEAARVARWDKLQREVLRRSTGEVVNLLEIDSLRPAPVDGGGSVVVYAQRSFL--LQGWILEDSFRAVLKRARASMRELKRRQAAVFSEARSMEQSWMAALVRWETQLSRARAAAVHGETRELRILQREDSEMAKALAGSRRLANTVDDAQRLIDAAQSALVVDLAKIVADNVASETDATAAARRGWWAEARRSLADLFSLGHTVG------GSAVADGDASNSPADRCCTSATEKSAFSASGLVPIIHARLNDYLKEEEKRAEHVAVGLVAGISFGGXXXXXXXPLNLAAADKQR-RSKAIELCENALEAAHDDLLCWTVEEKAHRDSGGRSRTRSGSGNSCPKRRGTNNPAENLASFRVQLEMEAIRLAAASFEVEVRGLAIGGGIPPETRVPETEASVAPPPLA------MEIEEKRLPPSTLLDD-PPASCLTRSQLDLRRAARAGSFARALGEMLSRAREALLKDTLEASFSLECDDYTPYGFRRVRVVSMVVFRHRRRVEEMRTRARVEGDEALEIARSQVENLCEERSSRVKAVADVRRRVVESAVRWIENAVRSHAQRSERQRCRREEHQHQLSACLRDFGRTISVEQRGWLCRVKDQACQAAEAARGMLADHVVELV---RRREEEEXXXXXXQGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQIMVGYADGDRNIQDVHGDQHSFRGKGSREEHQDQENWQTAGEDAHEKLKDKNDTMVDLLAQTQVFDALVAAEASCLSCVSTWVQDARHRARETMSSWEKEVAYGDHSEGAMTSTELEALVLAFHGAKKEADEVVSGALGSGILPWPSSATGGGVAVRAGEAAGSKYP-ATAGAEAKAAVKIESPRCRFIAEEQKECSALWLALEQLLSSLQLKLHDTGNGGSTGHCIADEE----EEANQAASQIIDRLEFELKGEVARYFAV--KVEEVRCMTRAANEELRLECGLPAMEREPK 4350
S RSV+SA SF TL S GE S SL +D N LA ADA + +GLG+V+ TL DSWK LPWQARLCP+AIE +E+ RR SALE EN+RVQ WR+ QQ+LATSAAREEE+ +SGWWK AEKLW++QSQRR+SHE LA RH+ +LAA E++RT LLS GYG ELA LDSMD++ E LRQ E L SF D+ + EE ++ T PK T S+ E + D A A+ATP TL R+ P + A EAR + E+IS+ Q ELERV+LH S M A + F RRRQSL +L+ GLT YRD RA ARR FV ECAADIGRI+Q+ S S GGG G XXXXXXXXX DV SG GT+ D S + S V D + TTG P AAG RER RATR LRSEA+RVARWDKLQR VLRRST EV LL D LR DGGG + QR G ++E + AV KRAR SMREL+ RQA EAR +E+SWM +L +WE QL +ARA A E RELRILQRED+E A+AL S+ LA +D Q L+D AQS+LVVDLAKIVAD A +A A ARR WWAEAR SL DLF H+ G AD D SATEK A ++S + I L++ L+ EE E A + ++ PL++AA + QR ++ +E C EAA D TV + + ++ + G+S G +NP E LASFR +LE +A++LA ASFE EVR AI IP ET +V PP LA +EIE K P LD PP+S LTRSQLDL R AR +FAR + +MLSR R+ALLK+TL+A+ + E D Y + VS ++ RH ++ ++T +R +GD+ALE A ++ E L EERS R K A +RRR + V W+ AV + +RSER+ ++ A L +F R S EQ+ WL V+ + +A E AR ++DHV EL+ R+R++++ +G A +M A + D D HS G + + Q + A +D + + ++ L + + L AAEASC+ + WV++AR R E +S+W E A GD E MT TELE L AF A+K+ADE VS A PS +G G A E P AT G+ E+ F+AEE++ECSALW +LE+ LS+ +L L T GS G C ++E +EA AAS+II LE EL+ V F+ KVEEVR M RA+++ELR+ L + E + K
Sbjct: 110 SPRSVNSADSFGTLASTGEESFSLELDGNANGSLAQEGEADAVGGNGTAEAGSASKGLGIVDRTLFDSWKELPWQARLCPKAIEGQEVVRRASALEMENIRVQAWRRTQQLLATSAAREEEQRISGWWKGEAEKLWRIQSQRRQSHETLAARHEGELAAREDKRTELLSKGYGRELAKLDSMDEANHLESLRQAEMLFSFAVGDSSIAEETRKPTSPKEGVTTSTVA--EGL-DTVAAPGAYATPPGTTLRTSVRSPRVPDGREKEEGTLAGTKEQXXXXXXXNGEARVVQETAEADCIEKISSHVQLELERVALHESVMKATVDKFRRRRQSLAVILWCGLTAMYRDCRARARRTFVSECAADIGRIKQLASSPSSGGGSTGEGQNFPLSPXXXXXXXXXXXGTEDVLNEFCGSGSGTLSDCGESDSGITRPSGVDVADSPPDVQDALRKTTA----TTG-GPGAAGHRERTRATRELRSEASRVARWDKLQRGVLRRSTYEVTRLLTPDGLRRH--DGGGWPNAWRQRGDRRGADGGVVESTL-AVHKRARLSMRELRGRQADASLEARIIERSWMVSLAQWEAQLVKARAVAADAEVRELRILQREDAETARALEVSQSLARVIDREQNLVDDAQSSLVVDLAKIVADENAKRAEAAAVARRHWWAEARESLLDLFRSVHSSNWNDQESGGGCADVDVGIHGGG----SATEKPAATSSASLQRIRTSLDELLRAEEILIEKAATDFLTAVNADECGGGGGGPLHVAAVENQRYTNEVLERCTKTFEAASFDPPTSTVRQPTPVNL---NQWSTEGGSSSGHLGGAHNPEEELASFRGRLETDAVQLAVASFEAEVRQWAIDAAIP-ET----ASEAVLPPCLAGAPSTMVEIEGKGSSPPFPLDGRPPSSDLTRSQLDLGRVARVKAFARTMEDMLSRTRKALLKETLQAATATEND----YNLK----VSSIISRHSGKISHLKTESRAKGDKALETALNEAETLSEERSWRSKTAAAIRRRALGPVVSWVGAAVDAELRRSERRXXXXXXXXXRIRASLENFERNASEEQQDWLRHVRGRGHEATEVARTAISDHVAELILHERQRQQDQ------EGRYEALSMAADTAKDLSSLQDCSSSAGEGTSTDDKDKPGEQGKMEQGEQLMALNQSALVMNTVAAAEGVNGDYVDDDHSG-GNFPQPQFQGAKRQHVANQDGDGDVFVEPPSLEGL--RVEAMAVLAAAEASCMCDIDAWVEEARRRELEMISAWMAEAASGDIEEREMTETELETLESAFRAARKDADEAVSSACCEAYSLRPSGVSGAGAAPSGTEKTADPEPYATIGS-------TETAAPGFLAEEEEECSALWPSLERPLSTQKLALK-TIAAGSGGLCRDEKEGEEGKEAKLAASRIITGLECELRAVVTDSFSSTGKVEEVRSMIRASSDELRVAFTLISEETQAK 1537
BLAST of mRNA_H-canaliculatus_F_contig105.484.1 vs. uniprot
Match: A0A6H5K2B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B6_9PHAE) HSP 1 Score: 665 bits (1715), Expect = 2.360e-208 Identity = 596/1515 (39.34%), Postives = 771/1515 (50.89%), Query Frame = 1
Query: 43 SSRSVSSAGSFETLTSAGEGSLSLGMDFNGGSFLADVAGADA-------EKNAEVHEGLGMVETTLLDSWKVLPWQARLCPRAIEERELSRRTSALEEENLRVQDWRQKQ---QILATSAAREEERIVSGWWKRAAEKLWKLQSQRRESHEGLAKRHDAKLAALENQRTALLSTGYGAELATLDSMDQSRLREHLRQMETLLSFVFSDNG-LEEGQRATFPKARSTA--SSEKPFEAISDETIASI-AFATPGNVTLPPGRRASLSPSSPPLQTAPAAAVAASETNASQTPSEAREAEHLRATASF---ERISTQTQSELERVSLHTSAMAAMAETFHRRRQSLIGLLYGGLTEAYRDMRAGARRAFVWECAADIGRIRQIGFSSSRGGGHGXXXXXXXXXXXXXXXXXXDAEKCDVS----------GDGTVPDVNN----SKDIAISTGNRSNS---SSSGGVLDPAAELKVESEPTTG--RSPEAAGCRERIRATRALRSEAARVARWDKLQREVLRRSTGEVVNLLEIDSLRPAPVDGGGSVVVYAQRSFLLQGWI-LEDSFRAVLKRARASMRELKRRQAAVFSEARSMEQSWMAALVRWETQLSRARAAAVHGETRELRILQREDSEM------------------------------AKALAGSRRLANTVDDAQRLIDAAQSALVVDLAKIVADNVASETDATAAARRGWWAEARRSLADLFSLGHTVGGSAVADGDASNSPAD-----RCCTSATEKSAFSASGLVPIIHARLNDYLKEEEKRAEHVAVGLVAGISFGGXXXXXXXPLNLAAADKQRRS-KAIELCENALEAAHDDLLCWTVEEKAHRDSGGRSRTRSGSGNSCPKRRGTNNPAENLASFRVQLEMEAIRLAAASFEVEVRGLAIGGGIPPETRVPETEASVAP-----PPLAMEIEEKRLPPSTLLDD-PPASCLTRSQLDLRRAARAGSFARALGEMLSRAREALLKDTLEASFSLECDDYTPYGFRRVRVVSMVVFRHRRRVEEMRTRARVEGDEALEIARSQVENLCEERSSRVKAVADVRRRVVESAVRWIENAVRSHAQRSERQRCRREEHQHQLSACLRDFGRTISVEQRGWLCRVKDQACQAAEAARGMLADHVVELVRRREEEEXXXXXXQGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQIM--VGYADGDRNIQDVHGDQHSFRGKGSREEHQDQENWQTAGEDAHEKLKDKNDTMVDLLA----QTQVFDALVAAEASCLSCVSTWVQDARHRARETMSSWEKEVAYGDHSEGAMTSTELEALVLAFHGAKKEADEVVSGALGSGILPWPSSATGGGVAVRAGEAAGSKYP-ATAGAEAKAAVKIESPRCRFIAEEQKECSALWLALEQLLSSLQLKLHD--TGNGGSTGHCIADEEE-EANQAASQIIDRLEFELKGEVARYFAV--KVEEVRCMTRAANEELRL 4314
S RSV+SA SF TL S GE S SL ++ N LA ADA + GLG+V TL DSWK WQ RLCP AIE +E+ RRTSAL+ E K ATSAAREEE+ +SGWWK AE LW++QSQRR+SHE LA RH+ +LAA E++RT LLS G G ELA LDSMD++ E LRQ+ETL SF G +EE + T PKA T ++E F T+A+ A ATP TL R P + A A ++ TA E S+ Q ELERV+LH S M A A+ F RRRQSL +L+ GLT YRD RA ARR FV ECAADIGRI+Q+ S S GGG + + C +S GT +N S DI S G NS S V D + +++ TT P AG RER RATR LRSEA+RVARWDKLQREVLRRST EV LL D LR DGGG + QR G + S AV KRAR SMREL+ RQA V EARS+E+SW+ +L +WE QL +ARAAA E R LRILQRED+E+ A+AL S+ LA+ +D Q L+D AQSALVVDLAKIVAD A +A A ARR WWAEAR L DLF H+V S D + AD SATEK A ++S + +I L++ L+ EE E A + ++ PL++AAA+ QR + + ++ C A EAA D TV + + ++ + G+S + G +NP E LASFR +LE +A++LA ASF++EVR LAI IP V +EA + P P +EIE K PP LD PP+S LTRS LDLRR AR +FAR + +MLS AR+A+LK+T S + + Y + VS ++ R+ ++ +RT A+ +GD+ALE A ++ E L EERS R K A +RRR + S V W+ A + +RSER++ HQH++ A L DF R S EQ+ WL +V+ + +A E AR ++DHV EL+ + E E A +M V A+G + H D H K + + Q + A +D D D VD + + + L AAEASC+ + WV+ R E +S+W E A GD E MT TELE L AF A+ + DEVVS A PS +G G A E + P AT G+ + +P F AEE++ECSALW +LE+ LSSL+L L G+GGS EE E AAS+II LE EL+ V F+ +VEEV+ + RA+++ELR+
Sbjct: 110 SPRSVNSADSFGTLASTGEESFSLELNDNANGSLAQEGEADAVGGNNGTAEAGSASRGLGIVGRTLFDSWKEFLWQVRLCPMAIEGQEVVRRTSALKMEMTGGSFSTSKGCSGLFCATSAAREEEQRISGWWKGEAEILWRIQSQRRQSHETLAARHEEELAAHEDKRTELLSKGCGRELAKLDSMDEANHLESLRQVETLFSFAVGGRGTVEETRETTTPKAGVTTGTAAEGLF------TVAAPGAHATPLGTTLRTSARPPGVPDGREKEEGTPAGTKEQXXXXXXXXXXXXXARVVQETAEADCTENFSSHLQLELERVALHESVMKATADKFRRRRQSLAVILWCGLTAMYRDCRARARRTFVSECAADIGRIKQLASSPSSGGGS-----------------TGEGQNCPLSPXXXXXXXXXXXGTEDVLNEYCCISSDILCSCGESDNSINRPSGVDVTDSSPDVQDALRKTTATIERPGVAGQRERTRATRELRSEASRVARWDKLQREVLRRSTYEVTRLLTSDGLRRH--DGGGWPYSWRQRGDRRGGDDGVAKSTLAVHKRARLSMRELRGRQADVSLEARSIERSWIVSLAKWEAQLVKARAAAADAEVRGLRILQREDAEVGGRGRGRVGRAFSTSPNMVPPSLQQQNQQTARALEVSQSLADVIDREQDLVDDAQSALVVDLAKIVADENAKRAEAAAVARRHWWAEAREILLDLF---HSVHSSNRNDQERGGGCADVDVGIHGSGSATEKPAATSSASLQLIRTSLDELLRAEEILVEKAAKDFLTAVNADEYGGGGGGPLHVAAAENQRSTNEVLDRCTKAFEAASFDPSTSTVGQPTPVNL---NQWSTEGGSSSGRLGGAHNPEEELASFRGRLETDAVQLAVASFDMEVRELAIDAAIP----VAASEAVMPPCFPGAPSTMLEIEGKGSPPPFPLDGRPPSSDLTRSHLDLRRVARVKAFARTMEDMLSTARKAILKETQRGSVAATATE-NDYNLK----VSSIIPRNSGKIGHLRTEAQAKGDKALETALNEAETLSEERSWRSKTAAAIRRRALGSVVSWVGAAADAELRRSERRQXXXXXHQHRIRASLEDFERIASEEQQDWLRQVRRRGHEATEVARATISDHVAELILHEPQREQDQEGGY-EALPMAADTPRDLSSLQDRSSSAGEGTTCSTDDKDKPGEQGNMEQGEQSMALNHPALVMNTVAVAEG---VNRDHVDDHHSGRKFPQPQFQGAKRQHVANQD------DDGDVFVDPPSLEGLRVEAMAVLAAAEASCICDIDAWVEKTLRRELEMISAWMAETASGDVEERDMTETELETLESAFRAARTDTDEVVSSACCEAYSLRPSGVSGAGAAPSETEEPANPEPDATIGS-----TEFAAPG--FFAEEEEECSALWSSLERSLSSLKLALKTIPAGSGGSRKDEKEGEEGIETKLAASRIITGLECELRAVVTDTFSSTGQVEEVQSIIRASSDELRV 1567 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig105.484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig105.484.1 >prot_H-canaliculatus_F_contig105.484.1 ID=prot_H-canaliculatus_F_contig105.484.1|Name=mRNA_H-canaliculatus_F_contig105.484.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1450bp MPSFGDLESTGAPDSSRSVSSAGSFETLTSAGEGSLSLGMDFNGGSFLADback to top mRNA from alignment at H-canaliculatus_F_contig105:25765..34648+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig105.484.1 ID=mRNA_H-canaliculatus_F_contig105.484.1|Name=mRNA_H-canaliculatus_F_contig105.484.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8884bp|location=Sequence derived from alignment at H-canaliculatus_F_contig105:25765..34648+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig105:25765..34648+ >mRNA_H-canaliculatus_F_contig105.484.1 ID=mRNA_H-canaliculatus_F_contig105.484.1|Name=mRNA_H-canaliculatus_F_contig105.484.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=8700bp|location=Sequence derived from alignment at H-canaliculatus_F_contig105:25765..34648+ (Hapterophycus canaliculatus Oshoro5f female)back to top |