mRNA_H-canaliculatus_F_contig10480.470.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10480.470.1
Unique NamemRNA_H-canaliculatus_F_contig10480.470.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10480.470.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 4.880e-84
Identity = 144/160 (90.00%), Postives = 150/160 (93.75%), Query Frame = 1 
Query:    4 SLGKEASRIMAKLVDKHTEPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKDQRVPRLQDLTMRPNITGKTIGALEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGIIDTKVILHFSLKHPIMVGKKAHKEIQV 483
            SLGKEASR MAK      +PATFVKELIYRSLER NLDKVYRQIQELRKRLRTREQKAVEEADLV+QAKLIRSKDQRVPRLQDLTMRP + GKT+G+LEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNG+IDTKVILHFSLKHPIMVGKKAHKEIQV
Sbjct:  583 SLGKEASRTMAK------DPATFVKELIYRSLERQNLDKVYRQIQELRKRLRTREQKAVEEADLVTQAKLIRSKDQRVPRLQDLTMRPTLAGKTVGSLEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGVIDTKVILHFSLKHPIMVGKKAHKEIQV 736
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BLAST of mRNA_H-canaliculatus_F_contig10480.470.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA)

HSP 1 Score: 202 bits (514), Expect = 1.000e-57
Identity = 110/162 (67.90%), Postives = 130/162 (80.25%), Query Frame = 1 
Query:    1 QSLGKEASRIMAKLVDKH-TEPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKDQRVPRLQDLTMRPNITGKTIGALEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGIIDTKVILHFSLKHPIMVGKKAHKEIQV 483
            Q+LGKEASR MAKLV++   +   FVKEL +RSL++ NL   +RQ+QELRKRLR REQKAVEEADLV QAKLIR  D +VPRL DLT+RPN+TGKT GALEAH+NGLRF S K   ++ LYANI+ A +QPC G  DTKV+LHF L+HPIMVGKKAHK +QV
Sbjct:  388 QALGKEASRRMAKLVERFGRDKQAFVKELTFRSLDQQNLGMAFRQVQELRKRLRLREQKAVEEADLVVQAKLIRMTDMKVPRLADLTLRPNLTGKTTGALEAHTNGLRFISIKGESVEILYANIRLAVFQPCEGN-DTKVVLHFYLRHPIMVGKKAHKNVQV 548
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BLAST of mRNA_H-canaliculatus_F_contig10480.470.1 vs. uniprot
Match: A0A7R9W7Y6_9STRA (FACT complex subunit (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7Y6_9STRA)

HSP 1 Score: 164 bits (416), Expect = 4.080e-46
Identity = 89/160 (55.62%), Postives = 119/160 (74.38%), Query Frame = 1 
Query:    4 SLGKEASRIMAKLVDKHTEPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKDQRVPRLQDLTMRPNITG-KTIGALEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGIIDTKVILHFSLKHPIMVGKKAHKEIQ 480
            +LGK+A +  + LV ++   A+F++E+ +RSLE HNL + YRQIQELRKR R +E + +EEA+LV Q KL+R+K++RVPRL DLTMRP   G KT G LEAHSNG+RF S +   +D +YANIKHA +QPC   I   V++HF LK+PIM+GKK  K+IQ
Sbjct:  107 ALGKDAPKNTSMLVQRYAPYASFIREMTFRSLESHNLTQAYRQIQELRKRERQKEIRELEEANLVKQEKLVRTKNERVPRLSDLTMRPVFAGRKTQGNLEAHSNGMRFISTRGEVVDIMYANIKHAIFQPCEQEI--MVLVHFHLKNPIMLGKKKQKDIQ 264
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BLAST of mRNA_H-canaliculatus_F_contig10480.470.1 vs. uniprot
Match: F0YK20_AURAN (FACT complex subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK20_AURAN)

HSP 1 Score: 164 bits (415), Expect = 9.940e-46
Identity = 81/161 (50.31%), Postives = 116/161 (72.05%), Query Frame = 1 
Query:    1 QSLGKEASRIMAKLVDKHTEPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKDQRVPRLQDLTMRPNITGK-TIGALEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGIIDTKVILHFSLKHPIMVGKKAHKEIQ 480
            QSL KE +    KL+D+H   +TF+KE++YRS E   L   YR IQELRKR R    +  EEADL+ Q KL++ +DQR+PR+ DLTMRP ++GK T G+LEAH+NGLRF+S+KH  +D +Y NI+H+ +QPC    +  V++HF L++PI++GKK  +++Q
Sbjct:   26 QSLAKEVATTTGKLIDQHGRTSTFIKEMLYRSREPRRLTAAYRMIQELRKRFRQHAARVAEEADLIIQEKLVKMRDQRIPRMTDLTMRPFLSGKKTTGSLEAHTNGLRFSSKKHEMVDIMYTNIQHSLFQPCE--CEVMVLIHFHLQNPILIGKKKTQDVQ 184
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BLAST of mRNA_H-canaliculatus_F_contig10480.470.1 vs. uniprot
Match: W7TT12_9STRA (FACT complex subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT12_9STRA)

HSP 1 Score: 168 bits (425), Expect = 3.180e-45
Identity = 89/161 (55.28%), Postives = 120/161 (74.53%), Query Frame = 1 
Query:    1 QSLGKEASRIMAKLVDKHTEPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKDQRVPRLQDLTMRPNITG-KTIGALEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGIIDTKVILHFSLKHPIMVGKKAHKEIQ 480
            Q+LGK+A  IM+KLV  H + A FVKE+++RSLE  NL+  YR IQELRKR R RE+ A EEADLV Q K++  K+QRV +LQD+ MRP+I+G KT+G LEAH+NGLRF S+K   +D +YAN+++A +QPC    D  V++HF LK PIM+ KK  +++Q
Sbjct:  650 QTLGKDAPGIMSKLVQAHGQKAGFVKEMLFRSLEHRNLNNAYRLIQELRKRARQREKDAKEEADLVEQEKIVLLKNQRVHKLQDVVMRPHISGRKTMGTLEAHANGLRFRSKKQEVVDIMYANVRNAIFQPCYS--DLNVLIHFHLKDPIMINKKKAQDVQ 808
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BLAST of mRNA_H-canaliculatus_F_contig10480.470.1 vs. uniprot
Match: A0A1Z5K1K7_FISSO (FACT complex subunit n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1K7_FISSO)

HSP 1 Score: 167 bits (423), Expect = 5.870e-45
Identity = 88/160 (55.00%), Postives = 119/160 (74.38%), Query Frame = 1 
Query:    4 SLGKEASRIMAKLVDKHTEPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKDQRVPRLQDLTMRPNITG-KTIGALEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGIIDTKVILHFSLKHPIMVGKKAHKEIQ 480
            ++GK+A   M KLV K+   A+F++EL +RSL+ HNL + +RQI ELRKR+RT+E +  EEADLV Q KL+R+K++RVPRL D+TMRP   G KT G LEAHSNG+RF S +   +D +Y+NIK+A YQPC   I   V++HF LK+PIM+GKK H ++Q
Sbjct:  625 AVGKDAPANMVKLVQKYAPYASFIRELTFRSLDGHNLTQAFRQISELRKRVRTKELQQQEEADLVEQEKLVRTKNERVPRLADVTMRPVFAGRKTQGNLEAHSNGMRFISTRQEIVDVMYSNIKYAIYQPCENEI--MVLIHFHLKNPIMIGKKKHNDVQ 782
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.470.1 vs. uniprot
Match: A0A6S9A9U8_9STRA (FACT complex subunit n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9A9U8_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.100e-44
Identity = 89/160 (55.62%), Postives = 118/160 (73.75%), Query Frame = 1 
Query:    4 SLGKEASRIMAKLVDKHTEPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKDQRVPRLQDLTMRPNITG-KTIGALEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGIIDTKVILHFSLKHPIMVGKKAHKEIQ 480
            ++GK+A   MAKLV K+   A+F++E+ +RSL+ HNL + +RQI ELRKR R +E + +EEA+LV QAKL+R+K +RVPRL DLTMRP   G KT G LEAHSNGLRF S +   +D +Y NIKHA +QPC   I   V++HF L+HPIM+GKK  ++IQ
Sbjct:  625 AVGKDAPANMAKLVQKYAPYASFIREMTFRSLDSHNLTQAFRQISELRKRARQKELRELEEANLVKQAKLVRTKTERVPRLSDLTMRPVFAGRKTQGNLEAHSNGLRFISMRGEIVDIMYPNIKHAIFQPCENEI--MVLVHFHLRHPIMLGKKKQQDIQ 782
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BLAST of mRNA_H-canaliculatus_F_contig10480.470.1 vs. uniprot
Match: A0A7S2A8Z5_TRICV (FACT complex subunit n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8Z5_TRICV)

HSP 1 Score: 164 bits (416), Expect = 1.390e-44
Identity = 90/160 (56.25%), Postives = 117/160 (73.12%), Query Frame = 1 
Query:    4 SLGKEASRIMAKLVDKHTEPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKDQRVPRLQDLTMRPNITG-KTIGALEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGIIDTKVILHFSLKHPIMVGKKAHKEIQ 480
            +LGK+A R  AKLV ++   A+F++E+ +RSLE HNL + YRQIQELRKR R +E +  EEA+LV Q KLIR+K++RVPRL DLTMRP     KT G LEAH+NG+RF S +   +D +Y NIKHA YQPC   I   V++HF L++PIM+GKK  K+IQ
Sbjct:  179 ALGKDAPRNTAKLVQRYAPYASFIREMTFRSLEPHNLTQAYRQIQELRKRERQKELREQEEANLVKQEKLIRTKNERVPRLSDLTMRPVFASRKTQGNLEAHTNGMRFISTRGEVVDVMYGNIKHAIYQPCENEI--MVLIHFHLRNPIMLGKKKQKDIQ 336
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.470.1 vs. uniprot
Match: A0A7S3PZD3_9STRA (FACT complex subunit n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZD3_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.760e-44
Identity = 90/161 (55.90%), Postives = 118/161 (73.29%), Query Frame = 1 
Query:    4 SLGKEASRIMAKLVDKHTEPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKDQRVPRLQDLTMRPNITG-KTIGALEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGIIDTKVILHFSLKHPIMVGKKAHKEIQV 483
            +LGKEASR + KLV+K+   ATFV+E+ +RSL+  NL++ YR I ELRKR R +E +  EEA LV Q KL+R+K++RVPRL DLTMRP   G KT G LEAHSNGLRF S +   +D +Y+NI+HA +QPC   I   V++HF LK+PIM+GKK  + +QV
Sbjct:  621 ALGKEASRNIVKLVEKYAPYATFVREMTFRSLDGRNLNQAYRMIMELRKRYRQKEVQEQEEATLVKQDKLVRTKNERVPRLSDLTMRPVFAGRKTQGNLEAHSNGLRFISNRGESVDIIYSNIEHAIFQPCESEI--MVLIHFYLKNPIMIGKKKQRNLQV 779
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.470.1 vs. uniprot
Match: A0A7S1ULG9_9STRA (FACT complex subunit (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1ULG9_9STRA)

HSP 1 Score: 164 bits (415), Expect = 6.540e-44
Identity = 86/161 (53.42%), Postives = 117/161 (72.67%), Query Frame = 1 
Query:    4 SLGKEASRIMAKLVDKHTEPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAVEEADLVSQAKLIRSKDQRVPRLQDLTMRPNITG-KTIGALEAHSNGLRFTSQKHAPLDFLYANIKHAFYQPCNGIIDTKVILHFSLKHPIMVGKKAHKEIQV 483
            S+ K+    MA +  KH     F+KE+++RSL+  NL + +RQI ELRKR+R+RE K  EEADLV QA+L R KDQR PRL D+T+RP ++G K++G LEAH+NG+RFTS +   LD +Y+N++HA  QPC    +T V LHF+LK+PIMVGKK H ++QV
Sbjct:  564 SVTKDTPPSMAAITKKHGGQRIFIKEMLFRSLQNENLRRAFRQINELRKRVRSREAKEAEEADLVEQARLERLKDQRAPRLADVTLRPQLSGRKSMGHLEAHANGMRFTSTRGEYLDIMYSNVRHAIMQPCKE--ETMVALHFNLKNPIMVGKKKHHDVQV 722
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10480.470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY1_ECTSI4.880e-8490.00FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z130_9STRA1.000e-5767.90FACT complex subunit n=1 Tax=Tribonema minus TaxID... [more]
A0A7R9W7Y6_9STRA4.080e-4655.63FACT complex subunit (Fragment) n=1 Tax=Pseudictyo... [more]
F0YK20_AURAN9.940e-4650.31FACT complex subunit n=1 Tax=Aureococcus anophagef... [more]
W7TT12_9STRA3.180e-4555.28FACT complex subunit n=2 Tax=Monodopsidaceae TaxID... [more]
A0A1Z5K1K7_FISSO5.870e-4555.00FACT complex subunit n=2 Tax=Fistulifera solaris T... [more]
A0A6S9A9U8_9STRA1.100e-4455.63FACT complex subunit n=3 Tax=Ditylum brightwellii ... [more]
A0A7S2A8Z5_TRICV1.390e-4456.25FACT complex subunit n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3PZD3_9STRA2.760e-4455.90FACT complex subunit n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1ULG9_9STRA6.540e-4453.42FACT complex subunit (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10480contigH-canaliculatus_F_contig10480:2448..4279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score265.0
Seed ortholog evalue2.2e-68
Seed eggNOG ortholog2880.D7FPY1
Preferred nameSPT16
KEGG koko:K20093
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0000791,GO:0001672,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005719,GO:0005730,GO:0006139,GO:0006325,GO:0006333,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035101,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Fact complex subunit
EggNOG OGsCOG5406@1,KOG1189@2759
EC3.6.4.12
COG Functional cat.BKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size489
Cds size459
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10480.470.1prot_H-canaliculatus_F_contig10480.470.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10480 2478..4279 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928694.764723-UTR-H-canaliculatus_F_contig10480:2447..24771622928694.764723-UTR-H-canaliculatus_F_contig10480:2447..2477Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10480 2448..2477 +
1696845528.454882-UTR-H-canaliculatus_F_contig10480:2447..24771696845528.454882-UTR-H-canaliculatus_F_contig10480:2447..2477Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10480 2448..2477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928694.7746878-CDS-H-canaliculatus_F_contig10480:2477..25031622928694.7746878-CDS-H-canaliculatus_F_contig10480:2477..2503Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 2478..2503 +
1696845528.4728665-CDS-H-canaliculatus_F_contig10480:2477..25031696845528.4728665-CDS-H-canaliculatus_F_contig10480:2477..2503Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 2478..2503 +
1622928694.7838922-CDS-H-canaliculatus_F_contig10480:2814..29351622928694.7838922-CDS-H-canaliculatus_F_contig10480:2814..2935Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 2815..2935 +
1696845528.4834511-CDS-H-canaliculatus_F_contig10480:2814..29351696845528.4834511-CDS-H-canaliculatus_F_contig10480:2814..2935Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 2815..2935 +
1622928694.7932103-CDS-H-canaliculatus_F_contig10480:3428..35931622928694.7932103-CDS-H-canaliculatus_F_contig10480:3428..3593Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 3429..3593 +
1696845528.4927466-CDS-H-canaliculatus_F_contig10480:3428..35931696845528.4927466-CDS-H-canaliculatus_F_contig10480:3428..3593Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 3429..3593 +
1622928694.8077466-CDS-H-canaliculatus_F_contig10480:4132..42791622928694.8077466-CDS-H-canaliculatus_F_contig10480:4132..4279Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 4133..4279 +
1696845528.501732-CDS-H-canaliculatus_F_contig10480:4132..42791696845528.501732-CDS-H-canaliculatus_F_contig10480:4132..4279Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 4133..4279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10480.470.1

>prot_H-canaliculatus_F_contig10480.470.1 ID=prot_H-canaliculatus_F_contig10480.470.1|Name=mRNA_H-canaliculatus_F_contig10480.470.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=153bp
MAKLVDKHTEPATFVKELIYRSLERHNLDKVYRQIQELRKRLRTREQKAV
EEADLVSQAKLIRSKDQRVPRLQDLTMRPNITGKTIGALEAHSNGLRFTS
QKHAPLDFLYANIKHAFYQPCNGIIDTKVILHFSLKHPIMVGKKAHKEIQ
VRR
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mRNA from alignment at H-canaliculatus_F_contig10480:2448..4279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10480.470.1 ID=mRNA_H-canaliculatus_F_contig10480.470.1|Name=mRNA_H-canaliculatus_F_contig10480.470.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1832bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10480:2448..4279+ (Hapterophycus canaliculatus Oshoro5f female)
CAGTCCCTCGGAAAGGAAGCGTCGCGGATAATGGCCAAGCTCGTCGACAA
GCACACGTCGGGGTGAGCGATGCCCGCGAGGAATGGTAGTGGTCGCTGTC
CACCTCGAGGGTTGTCTCGTTCCGCCGCCCGTCTGTAACGCTGATAAATG
TTTTGTTGTGCTCTTGGCTCTCGAGGTTTCATGGATCTTGTTCCTTGCGA
CGCTGAAGAGTGGCGAGCGAAGCCGAATAACCGGCCGTGTTTCTGGAGTG
TCACGGCCGTCGATTTGGTGACGGCTTGGATCTGAGCAACAGCCTGTCTT
TCGTTTTTGTAGTGCTTCGTTCGTTGGTTGGATCGATCGTTCGTCTTGCC
CTTTTGTTTTTTGCCAGCGAGCCGGCGACGTTCGTGAAGGAGCTAATCTA
CCGCAGCCTGGAGCGGCACAACCTGGACAAGGTGTACCGGCAGATCCAGG
AGCTCAGGAAGCGCTTGCGCACTCGCGAACAAAAAGCGGTAGGTGCAATC
CGACCGTTTTGTTTACTCTGCAGTTCCGCTGCCCATGCGGTAGCCTTGTT
TATGGGTCACCTTTGCATGGCGTTTTACCTCCAAGACGCCTCCAGTGTGG
TTGAACTCCTCACATGCTCTTGCGTGGAGCAGCCTGGAGAGCACACGCGG
ACACGAAAGCCGACGTCAGCGTGCGCTTCCTCTCCGCATGTTCCACGCGC
GTCGAAGCTCTATCGCTTGCGTCTTGTCCTCAGACAACATGCCTTCCTCT
CTCCCTCCCTCCCTTGGTCCACCGTCTGCCCCCATCACCTCGTTCCTTCC
GTCCTTAGTCCCCCCCCCCCCCCCCCCCCCCCCCGCCTCGCCACGAAGTT
GCTTCGTCTCTGGCTTCAACCCCGGAGCTGCCGGTGCGTTAGTTCCTTTA
ACGTGTAAGAAGCTCACGCACGTGCCTGTCTACGTCCGCATTCCTCGCCG
CCGCCGCCGCCCACCCCCTTCGCGAGCGCAGGTGGAAGAGGCGGATCTGG
TGTCGCAAGCGAAGCTCATCCGGAGCAAAGACCAGCGGGTGCCGCGCCTG
CAGGACCTGACGATGCGGCCCAACATCACCGGCAAGACTATCGGGGCTTT
GGAGGCGCACTCGAACGGCCTGCGCTTCACGTCCCAGAAGCACGCGGTAA
GGGTCTACACGAAACGCCGCCTAGGGCTGCCCACCCATAACAGCACATGG
CGGCGGCGGCGGTGGCAGCGGCGGTGGCAGCGGCGGTGGCTTCCCCTCTG
TGGTAGATGACTTCCCCTCTGTGGTAGATGATGCCCCCAAGCGTTGGTTA
TTTGTTCCGCGCGCTATTTGGTGTGAACTGTGCGCGGCGCCGCCGGGCTG
GAAGGCGCTGCGGTCCGATTGGCTCCGGCGCGTTCCTCATCCCGAGGAGC
GGGCGATACGATTGAGCGGCGAAATTTTGAGATTTTGGGCGGAGAAGCGT
TTTTTTTTCGTTTTTTTTACCTGCTAGGAGTTCGGATGTCTCGCCCTCCT
TTCCTTTCCCTTGCTTGTCAAAAACAAAGTTGCCGACGAGGAGTGCGTGT
CCGGTCGATGTGGTTTTCTGGAGTGGTGGGCTACATCCCCGCCGTGTCTC
GCCGCATGCTTCCGGCAGCGTCTTCGTTTTTTTTCATCGCGTTCGTGCCG
TTGTTGTTTTTCGTGCGCTTGACTGGACTCGACAGCCGCTGGACTTCCTG
TACGCCAACATCAAGCACGCTTTCTACCAGCCGTGCAACGGAATCATCGA
CACCAAAGTCATCCTGCACTTCAGCCTTAAGCACCCCATTATGGTCGGCA
AGAAGGCCCACAAGGAGATACAGGTGCGACGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10480:2448..4279+

>mRNA_H-canaliculatus_F_contig10480.470.1 ID=mRNA_H-canaliculatus_F_contig10480.470.1|Name=mRNA_H-canaliculatus_F_contig10480.470.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10480:2448..4279+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCAAGCTCGTCGACAAGCACACATGGCCAAGCTCGTCGACAAGCAC
ACCGAGCCGGCGACGTTCGTGAAGGAGCTAATCTACCGCAGCCTGGAGCG
GCACAACCTGGACAAGGTGTACCGGCAGATCCAGGAGCTCAGGAAGCGCT
TGCGCACTCGCGAACAAAAAGCGCGAGCCGGCGACGTTCGTGAAGGAGCT
AATCTACCGCAGCCTGGAGCGGCACAACCTGGACAAGGTGTACCGGCAGA
TCCAGGAGCTCAGGAAGCGCTTGCGCACTCGCGAACAAAAAGCGGTGGAA
GAGGCGGATCTGGTGTCGCAAGCGAAGCTCATCCGGAGCAAAGACCAGCG
GGTGCCGCGCCTGCAGGACCTGACGATGCGGCCCAACATCACCGGCAAGA
CTATCGGGGCTTTGGAGGCGCACTCGAACGGCCTGCGCTTCACGTCCCAG
AAGCACGCGGTGGAAGAGGCGGATCTGGTGTCGCAAGCGAAGCTCATCCG
GAGCAAAGACCAGCGGGTGCCGCGCCTGCAGGACCTGACGATGCGGCCCA
ACATCACCGGCAAGACTATCGGGGCTTTGGAGGCGCACTCGAACGGCCTG
CGCTTCACGTCCCAGAAGCACGCGCCGCTGGACTTCCTGTACGCCAACAT
CAAGCACGCTTTCTACCAGCCGTGCAACGGAATCATCGACACCAAAGTCA
TCCTGCACTTCAGCCTTAAGCACCCCATTATGGTCGGCAAGAAGGCCCAC
AAGGAGATACAGGTGCGACGCCCGCTGGACTTCCTGTACGCCAACATCAA
GCACGCTTTCTACCAGCCGTGCAACGGAATCATCGACACCAAAGTCATCC
TGCACTTCAGCCTTAAGCACCCCATTATGGTCGGCAAGAAGGCCCACAAG
GAGATACAGGTGCGACGC
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