mRNA_H-canaliculatus_F_contig10480.469.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10480.469.1
Unique NamemRNA_H-canaliculatus_F_contig10480.469.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.469.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 1.960e-55
Identity = 101/109 (92.66%), Postives = 106/109 (97.25%), Query Frame = 1 
Query:   58 RAKERAAALERRARGEEGSGDEGGEEVEELAAYHDSADYPRRVQPNQLFVDMDKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCYYLRINFFTSGSSLGKEASRIMAK 384
            RAKERAAALERRARGE+GSGDEGGEEV+ELAAY D ADYPRRVQPNQLFVDM+KEVVFAPINGQPVPLSIHTIKNVTQPDPDNHC+YLRINFFTSG+SLGKEASR MAK
Sbjct:  486 RAKERAAALERRARGEDGSGDEGGEEVDELAAYKDPADYPRRVQPNQLFVDMEKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCHYLRINFFTSGASLGKEASRTMAK 594
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.469.1 vs. uniprot
Match: A0A835Z130_9STRA (FACT complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z130_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.190e-25
Identity = 52/75 (69.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:  172 YPRRVQPNQLFVDMDKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCYYLRINFFTSGSSLGKEASRIMAKLVDK 396
            YP+   P+Q+ VDMD+EVV  PINGQPVP SIHTIKNV  P+PDNH +YLRINFF  G +LGKEASR MAKLV++
Sbjct:  330 YPKDTMPHQIKVDMDREVVLCPINGQPVPFSIHTIKNVVMPEPDNHSFYLRINFFAPGQALGKEASRRMAKLVER 404
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.469.1 vs. uniprot
Match: A0A7S4ER70_9STRA (FACT complex subunit n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ER70_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.800e-22
Identity = 61/127 (48.03%), Postives = 83/127 (65.35%), Query Frame = 1 
Query:   19 SQREGRMSALLKKRAKERAAALERRARGEEGSGDEGGEEVEELAAYHDSADYPRRVQPNQLFVDMDKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCYYLRINFFTSGSSLGKEASRIMAKLVDKH 399
            ++RE R  AL+++R +ER   + R+   + G G E  ++ EEL AY +  DYP  VQPNQ+ VDM ++ V  P+ G P+P  I TIKNV  PDPDN    LRINF+T+G +LGK+A   MAKLV K+
Sbjct:  182 AERERRQIALMERRNEERVREIARQNSRKRGKGAEE-DQAEELEAYRNPRDYPPNVQPNQVKVDMARQCVILPVFGNPIPFHISTIKNVVLPDPDN-ATLLRINFYTAGIALGKDAPANMAKLVQKY 306
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.469.1 vs. uniprot
Match: A0A6S9A9U8_9STRA (FACT complex subunit n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9A9U8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.660e-22
Identity = 64/129 (49.61%), Postives = 84/129 (65.12%), Query Frame = 1 
Query:   16 TSQREGRMSALLKKRAKERAAALERRARGEEGSGDEG-GEEVEELAAYHDSADYPRRVQPNQLFVDMDKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCYYLRINFFTSGSSLGKEASRIMAKLVDKH 399
            T++RE R  AL+ ++ +ER   L R AR +   GD+G  ++ EEL AY  + DYP  V PNQ+ VDM  + V  PI G PVP  I TIKNV  PDPD+   YLRINF+T+G ++GK+A   MAKLV K+
Sbjct:  517 TAERERRQIALMTRKNEERLRELARSARNK---GDDGESDKAEELRAYDRTKDYPDSVLPNQVKVDMVNQCVILPICGNPVPFHISTIKNVVLPDPDS-ATYLRINFYTAGMAVGKDAPANMAKLVQKY 641
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.469.1 vs. uniprot
Match: A0A448YVE9_9STRA (FACT complex subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVE9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 9.010e-22
Identity = 60/127 (47.24%), Postives = 82/127 (64.57%), Query Frame = 1 
Query:   19 SQREGRMSALLKKRAKERAAALERRARGEEGSGDEGGEEVEELAAYHDSADYPRRVQPNQLFVDMDKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCYYLRINFFTSGSSLGKEASRIMAKLVDKH 399
            ++RE R  AL+++R ++R   + R+   + G G E  ++ EEL AY    DYP  VQPNQ+ VDM  + V  P+ G P+P  I TIKNV  PDPDN    LRINF+T+G +LGK+A + MAKLV K+
Sbjct:  511 AERERRQIALMERRNEDRVREIARQNSKKRGKGAEE-DQAEELEAYRTPRDYPPNVQPNQVKVDMANQCVLLPVFGNPIPFHISTIKNVVLPDPDN-ATLLRINFYTAGIALGKDAPQNMAKLVQKY 635
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.469.1 vs. uniprot
Match: W7TT12_9STRA (FACT complex subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT12_9STRA)

HSP 1 Score: 103 bits (258), Expect = 9.060e-22
Identity = 61/121 (50.41%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:   37 MSALLKKRAKERAAALERRARGEEGSGDEGGEEVEELAAYHDSADYPRRVQPNQLFVDMDKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCYYLRINFFTSGSSLGKEASRIMAKLVDKH 399
            M ALL ++ KERA    +  R +E   +EG  EVEE+ AY  +  YPR ++ NQ+FVDM++E V  PI+G  VP  I TIKNV QP+PD   Y LRINF++ G +LGK+A  IM+KLV  H
Sbjct:  551 MKALLLRKMKERAEKAGKSGR-KEAVEEEG--EVEEIQAYRSTEQYPRDMRANQVFVDMEREAVLLPIHGMHVPFHIATIKNVVQPEPDAAAY-LRINFYSPGQTLGKDAPGIMSKLVQAH 667
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.469.1 vs. uniprot
Match: A0A7S0GEE7_9STRA (FACT complex subunit n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GEE7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.510e-19
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = 1 
Query:    7 QELTSQREGRMSALLKKRAKERAAALERRARGEEGSGDEGGEEVEELAAYHDSADYPRRVQPNQLFVDMDKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCYYLRINFFTSGSSLGKEASRIMAKLVDKH 399
            QE  S+RE R   L+ ++ +ER   L R A  +    D+  +  EEL  Y+ + DYP  V PNQ+ VDM  E V  PI G P+P  I TIKNV  PDPD    YLRINF+T+GS++GK+    M KL+ KH
Sbjct:  187 QEGASERERRQVELMSRKNEERIRELAR-ANAKNKGADKESDLAEELITYNRARDYPDYVMPNQVKVDMKNECVILPIFGNPIPFHISTIKNVVLPDPDL-ATYLRINFYTAGSTIGKDTPVNMGKLILKH 315
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.469.1 vs. uniprot
Match: B7FSR1_PHATC (FACT complex subunit n=5 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSR1_PHATC)

HSP 1 Score: 96.3 bits (238), Expect = 4.040e-19
Identity = 61/126 (48.41%), Postives = 78/126 (61.90%), Query Frame = 1 
Query:   22 QREGRMSALLKKRAKERAAALERRARGEEGSGDEGGEEVEELAAYHDSADYPRRVQPNQLFVDMDKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCYYLRINFFTSGSSLGKEASRIMAKLVDKH 399
            +RE R  +L+ +R +ER   L R  R ++G  DE    VEEL +Y  + DYP  VQPNQ+ VDM  + V  PI G PVP  I TIKNV  PD DN    LRINF+T+G ++GK+A   M KLV K+
Sbjct:  496 ERERRQISLMTRRNEERLRELARANR-KKGDNDENXX-VEELESYKRTRDYPDNVQPNQVKVDMASKCVVLPICGNPVPFHISTIKNVVMPDADN-ATLLRINFYTAGMAVGKDAPENMVKLVQKY 618
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.469.1 vs. uniprot
Match: A0A7S2H505_9STRA (FACT complex subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H505_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 6.330e-19
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:  142 ELAAYHDSADYPRRVQPNQLFVDMDKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCYYLRINFFTSGSSLGKEASRIMAKLVDKH 399
            +  A+  + +YP     N++FVDMDKEVVF P+NGQPVP  I T+KNV  P+ D   Y LRINF+  G SLGK+A + MA +++KH
Sbjct:   72 DFEAFKSTEEYPSGASMNRIFVDMDKEVVFLPVNGQPVPFHISTVKNVVMPEEDKAAY-LRINFYIPGQSLGKDAPKQMAAIIEKH 156
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10480.469.1 vs. uniprot
Match: A0A7S0Y7K9_9STRA (FACT complex subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7K9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.310e-18
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 1 
Query:   25 REGRMSALLKKRAKERAAALERRARGEEGSGDEGGEEVEELAAYHDSADYPRRVQPNQLFVDMDKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCYYLRINFFTSGSSLGKEASRIMAKLVDKH 399
            RE R  +L+++R ++R   + R    ++G      +  EEL  Y    DYP  VQPNQ+ VDM  + V  P+ G P+P  I TIKNV  PDPDN    LRINF+T+G +LGK+A   MAKLV K+
Sbjct:  272 RERRQISLMQRRNEDRVREIAR-LNSKKGGKKADEDMAEELETYRSPRDYPPNVQPNQVKVDMANQCVILPVFGNPIPFHISTIKNVVLPDPDN-ATLLRINFYTAGIALGKDAPANMAKLVQKY 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10480.469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY1_ECTSI1.960e-5592.66FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835Z130_9STRA1.190e-2569.33FACT complex subunit n=1 Tax=Tribonema minus TaxID... [more]
A0A7S4ER70_9STRA1.800e-2248.03FACT complex subunit n=1 Tax=Pseudo-nitzschia aust... [more]
A0A6S9A9U8_9STRA6.660e-2249.61FACT complex subunit n=3 Tax=Ditylum brightwellii ... [more]
A0A448YVE9_9STRA9.010e-2247.24FACT complex subunit n=1 Tax=Pseudo-nitzschia mult... [more]
W7TT12_9STRA9.060e-2250.41FACT complex subunit n=2 Tax=Monodopsidaceae TaxID... [more]
A0A7S0GEE7_9STRA1.510e-1945.80FACT complex subunit n=1 Tax=Proboscia inermis Tax... [more]
B7FSR1_PHATC4.040e-1948.41FACT complex subunit n=5 Tax=Phaeodactylum tricorn... [more]
A0A7S2H505_9STRA6.330e-1951.16FACT complex subunit n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0Y7K9_9STRA1.310e-1844.80FACT complex subunit n=1 Tax=Pseudo-nitzschia deli... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10480contigH-canaliculatus_F_contig10480:732..2814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue3.1e-49
Seed eggNOG ortholog2880.D7FPY1
Preferred nameSPT16
KEGG koko:K20093
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0000791,GO:0001672,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005719,GO:0005730,GO:0006139,GO:0006325,GO:0006333,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008023,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031491,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0035101,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Fact complex subunit
EggNOG OGsCOG5406@1,KOG1189@2759
EC3.6.4.12
COG Functional cat.BKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size712
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10480.469.1prot_H-canaliculatus_F_contig10480.469.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10480 768..2513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928694.5713243-UTR-H-canaliculatus_F_contig10480:731..7671622928694.5713243-UTR-H-canaliculatus_F_contig10480:731..767Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10480 732..767 +
1696845528.3683267-UTR-H-canaliculatus_F_contig10480:731..7671696845528.3683267-UTR-H-canaliculatus_F_contig10480:731..767Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10480 732..767 +
1622928694.7267308-UTR-H-canaliculatus_F_contig10480:2513..28141622928694.7267308-UTR-H-canaliculatus_F_contig10480:2513..2814Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10480 2514..2814 +
1696845528.4454195-UTR-H-canaliculatus_F_contig10480:2513..28141696845528.4454195-UTR-H-canaliculatus_F_contig10480:2513..2814Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10480 2514..2814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928694.603648-CDS-H-canaliculatus_F_contig10480:767..8901622928694.603648-CDS-H-canaliculatus_F_contig10480:767..890Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 768..890 +
1696845528.379136-CDS-H-canaliculatus_F_contig10480:767..8901696845528.379136-CDS-H-canaliculatus_F_contig10480:767..890Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 768..890 +
1622928694.6312711-CDS-H-canaliculatus_F_contig10480:1376..15651622928694.6312711-CDS-H-canaliculatus_F_contig10480:1376..1565Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 1377..1565 +
1696845528.4053059-CDS-H-canaliculatus_F_contig10480:1376..15651696845528.4053059-CDS-H-canaliculatus_F_contig10480:1376..1565Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 1377..1565 +
1622928694.648967-CDS-H-canaliculatus_F_contig10480:2450..25131622928694.648967-CDS-H-canaliculatus_F_contig10480:2450..2513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 2451..2513 +
1696845528.4369645-CDS-H-canaliculatus_F_contig10480:2450..25131696845528.4369645-CDS-H-canaliculatus_F_contig10480:2450..2513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10480 2451..2513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10480.469.1

>prot_H-canaliculatus_F_contig10480.469.1 ID=prot_H-canaliculatus_F_contig10480.469.1|Name=mRNA_H-canaliculatus_F_contig10480.469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
MSALLKKRAKERAAALERRARGEEGSGDEGGEEVEELAAYHDSADYPRRV
QPNQLFVDMDKEVVFAPINGQPVPLSIHTIKNVTQPDPDNHCYYLRINFF
TSGSSLGKEASRIMAKLVDKHTSG*
back to top

mRNA from alignment at H-canaliculatus_F_contig10480:732..2814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10480.469.1 ID=mRNA_H-canaliculatus_F_contig10480.469.1|Name=mRNA_H-canaliculatus_F_contig10480.469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2083bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10480:732..2814+ (Hapterophycus canaliculatus Oshoro5f female)
GAGCAGCAGGAGCTCACGAGCCAGAGGGAAGGGCGCATGTCGGCCCTGCT
GAAGAAGAGGGCCAAGGAGAGAGCGGCGGCGCTGGAGCGGAGGGCGAGGG
GGGAGGAGGGCTCGGGCGACGAGGGCGGGGAGGAGGTGGAAGAGCTGGCG
GCCTACCATGTAAGTACAGCCCGGCCTCCTGTGTGTTTCCATCAAGGCTT
TTTTCTCTGTGGGAGGAGAGAGGGGATTCGCATCCGGGGCTGGTGGGGGG
TTGCGGGACACGTTGTCTCTGGTGGATGGGTGTGTGTGTGTGCTTTTTTT
TTAGGGGGCGGGGGGGGCGTTTTTCCAAGTTTTTGTGATGCTGAGTCTGG
GTTGAGAGCAGGCCTAGGCTCGGACGGGCGTCTGTGATGGGGCCGAGACG
GCGGAGGCCCTTCGCCCTCTCCGTGGCCGTTCTGGAGGATGGCCTTGTCC
TCGCAACCACGAGCTCCTGAACGACTCAGCTCGCAGCTCGCAACCGGAGC
CTCTCACGTGCAACCTCATCACGGCGACGACGACCACCACCACCGCCACC
TTTACTGTCCCCACCCCTGAAACACCACCACCACCACCACGAATACCACC
ACCACCACCAACAACAACAATGACGTCGACACGGTGCACGCGTAGGACTC
GGCGGACTACCCCAGACGGGTGCAGCCGAACCAGCTGTTCGTGGACATGG
ACAAGGAGGTGGTGTTCGCCCCCATCAACGGCCAGCCGGTGCCCCTATCG
ATCCACACCATCAAGAACGTCACCCAGCCCGACCCGGACAACCACTGCTA
CTACCTCAGGATCAACTTCTTCACTTCGGGGTCGGTGAGTCTTCGAGGGG
TTTCGTGTTTCGTACTTGCTCTCCCCCCCCCTCGCCCTCTCGTTGCCGGC
GGGGCGGCAATTGCCATTTCTCTTTCGTGCGATTCACTCTGTTTTTGACG
AGCGTCCGTAGTGTAAAACTGGAGGGTTCGGAGCCGCAAAAAGAAAGGGT
GCGGGTCTTGACACGATAACCTAGAGTCGAGTGATTTACCATGTCTTGGA
AGGGGTGCACGTCTTGGATGTCGAGAAATCGTGTGAACGGAGTCGTGCCC
GCCTCCCCGCTCCCCCGTCCTCTCCAAAGCTTGACCCGTGCTTACCGTAG
ACATAGATGCATACGCACCCCTCTTTTTTCTCGTCTTTTTTTGTTCCCAC
GCCGTTTCCTCCCGTGTAGAGCGACTCCTCCTCGTTGCTCGCCTCGGCTC
TGACGCTGGCGTCATGGGTCACGTCGAGCAGCTGGTGATGCTCTGAGAGG
TTGTGTCGCTCCTGCTCTTTTCGATTCGCGCATCGGTTACGCTGCTGTAG
GCGGCGTTAAGTTGGCACTGGGTGCGCTCGTGGCGGTATGCTTTTGTGGT
GGGTGTGCCTTCGTGCCGTGTCGATACGATAGGTGCGGGTTTCTCCCGCG
CCTGCGTGCTCCTCGCTCTTCGCTACCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCAAACCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCACCCCNNNNNNNNNNTCGTGCCGGGTCGGAACCGTTGGGCCG
GGTTCCTCCCCCCCCCGCCTGCCCCTCCCTCTTCGCCCCCCCCCCCCCCC
CTCCCCTCCCGCTTCCCCACTCTCTTCTCAAATCTTCGCCACCCCGCTGC
CACCGACGACACACCACAGTCCCTCGGAAAGGAAGCGTCGCGGATAATGG
CCAAGCTCGTCGACAAGCACACGTCGGGGTGAGCGATGCCCGCGAGGAAT
GGTAGTGGTCGCTGTCCACCTCGAGGGTTGTCTCGTTCCGCCGCCCGTCT
GTAACGCTGATAAATGTTTTGTTGTGCTCTTGGCTCTCGAGGTTTCATGG
ATCTTGTTCCTTGCGACGCTGAAGAGTGGCGAGCGAAGCCGAATAACCGG
CCGTGTTTCTGGAGTGTCACGGCCGTCGATTTGGTGACGGCTTGGATCTG
AGCAACAGCCTGTCTTTCGTTTTTGTAGTGCTTCGTTCGTTGGTTGGATC
GATCGTTCGTCTTGCCCTTTTGTTTTTTGCCAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10480:732..2814+

>mRNA_H-canaliculatus_F_contig10480.469.1 ID=mRNA_H-canaliculatus_F_contig10480.469.1|Name=mRNA_H-canaliculatus_F_contig10480.469.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10480:732..2814+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGGCCCTGCTGAAGAAGAGGGCCAAGGAGAGAGCGGCGGCGCTGGA
GCGGAGGGCGAGGGGGGAGGAGGGCTCGGGCGACGAGGGCGGGGAGGAGG
TGGAAGAGCTGGCGGCCTACCATATGTCGGCCCTGCTGAAGAAGAGGGCC
AAGGAGAGAGCGGCGGCGCTGGAGCGGAGGGCGAGGGGGGAGGAGGGCTC
GGGCGACGAGGGCGGGGAGGAGGTGGAAGAGCTGGCGGCCTACCATGACT
CGGCGGACTACCCCAGACGGGTGCAGCCGAACCAGCTGTTCGTGGACATG
GACAAGGAGGTGGTGTTCGCCCCCATCAACGGCCAGCCGGTGCCCCTATC
GATCCACACCATCAAGAACGTCACCCAGCCCGACCCGGACAACCACTGCT
ACTACCTCAGGATCAACTTCTTCACTTCGGGGTCGGACTCGGCGGACTAC
CCCAGACGGGTGCAGCCGAACCAGCTGTTCGTGGACATGGACAAGGAGGT
GGTGTTCGCCCCCATCAACGGCCAGCCGGTGCCCCTATCGATCCACACCA
TCAAGAACGTCACCCAGCCCGACCCGGACAACCACTGCTACTACCTCAGG
ATCAACTTCTTCACTTCGGGGTCGTCCCTCGGAAAGGAAGCGTCGCGGAT
AATGGCCAAGCTCGTCGACAAGCACACGTCGGGGTGATCCCTCGGAAAGG
AAGCGTCGCGGATAATGGCCAAGCTCGTCGACAAGCACACGTCGGGGTGA
back to top