mRNA_H-canaliculatus_F_contig1047.460.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1047.460.1
Unique NamemRNA_H-canaliculatus_F_contig1047.460.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1047.460.1 vs. uniprot
Match: D8LEF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF6_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 2.930e-47
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 1
Query:    1 MGYNDLGNDWQHSLVLATGSAEGSIHVFDLSNGQGEEMQTLRGHRDRVHSADFHPTEPKLVSCSADKTVRIWEPNRKRTGRK 246
            MGY DLGNDWQHSLVLATGSA+GSIHVFDLS GQG+E+QTL GHRDRV+SADFHPTEPKLVS SADKTV IWEPNRKR  RK
Sbjct:    1 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLLGHRDRVYSADFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 82          
BLAST of mRNA_H-canaliculatus_F_contig1047.460.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.150e-42
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 1
Query:    1 MGYNDLGNDWQHSLVLATGSAEGSIHVFDLSNGQGEEMQTLRGHRDRVHSADFHPTEPKLVSCSADKTVRIWEPNRKRTGRK 246
            MGY DLGNDWQHSLVLATGSA+GSIHVFDLS GQG+E+QTLRGHRDRV+S DFHPTEPKLVS SADKTV IWEPNRKR  RK
Sbjct:  520 MGYKDLGNDWQHSLVLATGSADGSIHVFDLSKGQGDEIQTLRGHRDRVYSTDFHPTEPKLVSSSADKTVLIWEPNRKRNSRK 601          
BLAST of mRNA_H-canaliculatus_F_contig1047.460.1 vs. uniprot
Match: A0A835Z281_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z281_9STRA)

HSP 1 Score: 121 bits (303), Expect = 8.800e-34
Identity = 54/84 (64.29%), Postives = 69/84 (82.14%), Query Frame = 1
Query:    1 MGYNDLGNDWQHSLVLATGSAEGSIHVFDLSNGQGEEMQTLRGHRDRVHSADFHPTEPKLVSCSADKTVRIWEPNR--KRTGRK 246
            +GY D G DW HSLVLATGSA+G+I+ FD+S G+G ++QTLRGH DRV++  FHPTEP+LVS SAD+TVRIW P++  +R GRK
Sbjct:   41 IGYEDSGKDWAHSLVLATGSADGNIYTFDMSKGEGGDLQTLRGHNDRVYAVHFHPTEPRLVSGSADQTVRIWGPSKGGRRNGRK 124          
BLAST of mRNA_H-canaliculatus_F_contig1047.460.1 vs. uniprot
Match: R7QRT1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRT1_CHOCR)

HSP 1 Score: 84.3 bits (207), Expect = 3.360e-17
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   16 LGNDWQHSLVLATGSAEGSIHVFDLSN--GQGEEMQTLRGHRDRVHSADFHPTEPKLVSCSADKTVRIWE 219
            +G   Q+SL+LA+GSA+G+I +FD+    G G  +QTL GH+DRV+  DFHP EP L SCSAD  ++IW+
Sbjct:  482 IGGPIQNSLILASGSADGNICLFDVGGRPGTGALLQTLEGHKDRVYGVDFHPNEPILASCSADCGIKIWQ 551          
BLAST of mRNA_H-canaliculatus_F_contig1047.460.1 vs. uniprot
Match: A0A2V3IL28_9FLOR (WD repeat-containing protein 5B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL28_9FLOR)

HSP 1 Score: 81.3 bits (199), Expect = 4.090e-16
Identity = 37/69 (53.62%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   16 LGNDWQHSLVLATGSAEGSIHVFDL--SNGQGEEMQTLRGHRDRVHSADFHPTEPKLVSCSADKTVRIW 216
            +G+  + SLVLA+GSA+G+++VFD+  S G G  +QTL GH+D  +S DFHP EP L SCSAD  + IW
Sbjct:  484 IGDAIESSLVLASGSADGNVYVFDVGGSAGTGTLVQTLIGHKDIAYSVDFHPCEPILASCSADSKINIW 552          
BLAST of mRNA_H-canaliculatus_F_contig1047.460.1 vs. uniprot
Match: A0A8H7Q4N1_MORIS (GED domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q4N1_MORIS)

HSP 1 Score: 80.5 bits (197), Expect = 7.410e-16
Identity = 33/72 (45.83%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   31 QHSLVLATGSAEGSIHVFDLSNGQGEEMQTLRGHRDRVHSADFHPTEPKLVSCSADKTVRIWEPNRKRTGRK 246
            + S++LATGS++  ++++++     E MQ L GH DRV++A+FHPTEP L SCSAD T+++W P   R  +K
Sbjct:  422 EKSVLLATGSSDPYVYLYNIGENTAELMQRLEGHTDRVYAANFHPTEPILASCSADYTIKVWGPGAPRGKKK 493          
BLAST of mRNA_H-canaliculatus_F_contig1047.460.1 vs. uniprot
Match: A0A168T094_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168T094_ABSGL)

HSP 1 Score: 76.3 bits (186), Expect = 2.330e-14
Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   31 QHSLVLATGSAEGSIHVFDLSNGQGEEMQTLRGHRDRVHSADFHPTEPKLVSCSADKTVRIWEPN 225
            + S++LATGSA+  ++++++   + E MQ + GH DRV+S +FHPTEP L S SAD TV+IW P+
Sbjct:  439 EKSVLLATGSADPYVYLYNVGEDRSELMQRMEGHTDRVYSVNFHPTEPILASGSADFTVKIWGPS 503          
BLAST of mRNA_H-canaliculatus_F_contig1047.460.1 vs. uniprot
Match: T0QW05_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QW05_SAPDV)

HSP 1 Score: 74.3 bits (181), Expect = 1.110e-13
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    1 MGYND--LGNDWQHSLVLATGSAEGSIHVFDLS-------NGQGEEMQTLRGHRDRVHSADFHPTEPKLVSCSADKTVRIWEPNRKR 234
            +GY D  L       ++LATGSA+ +I++ D++       NG    +Q L GH DRV+S DFHP+EP L S SAD TV+IW P   R
Sbjct:  407 LGYQDRELQEKPDEVMLLATGSADNTIYLHDVTCRRGYGLNGSTSLLQRLEGHTDRVYSVDFHPSEPILASASADFTVKIWLPRTSR 493          
BLAST of mRNA_H-canaliculatus_F_contig1047.460.1 vs. uniprot
Match: A0A2P6MV32_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MV32_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 1.860e-12
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   37 SLVLATGSAEGSIHVFDLSNGQGEE--MQTLRGHRDRVHSADFHPTEPKLVSCSADKTVRIW 216
            S +LATGSA+  +++F++S  +G    +Q L GH D+V+S +FHP +P L S SAD TVR+W
Sbjct:  488 SFLLATGSADSQVYIFNVSGVEGSHILLQRLEGHTDKVYSVNFHPFDPILASASADGTVRLW 549          
BLAST of mRNA_H-canaliculatus_F_contig1047.460.1 vs. uniprot
Match: A0A433D2F6_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D2F6_9FUNG)

HSP 1 Score: 67.0 bits (162), Expect = 8.910e-12
Identity = 32/68 (47.06%), Postives = 39/68 (57.35%), Query Frame = 1
Query:   31 QHSLVLATGSAEGSIHVFDLSNGQGEEMQTLRGHRDRVHSADFHPTEPKLVSCSADKTVRIWEPNRKR 234
            Q   V + G     I  F  +    E MQ L GH DRV++  FHPTEP L SCSAD TV+IW P +K+
Sbjct:  127 QRGRVFSLGGGTNQIK-FTPNQNSAELMQRLEGHTDRVYAVHFHPTEPILASCSADFTVKIWGPTKKK 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1047.460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF6_ECTSI2.930e-4786.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNQ7_9PHAE1.150e-4286.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z281_9STRA8.800e-3464.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R7QRT1_CHOCR3.360e-1752.86Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3IL28_9FLOR4.090e-1653.62WD repeat-containing protein 5B n=1 Tax=Gracilario... [more]
A0A8H7Q4N1_MORIS7.410e-1645.83GED domain-containing protein n=1 Tax=Mortierella ... [more]
A0A168T094_ABSGL2.330e-1449.23Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
T0QW05_SAPDV1.110e-1344.83Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2P6MV32_9EUKA1.860e-1248.39Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A433D2F6_9FUNG8.910e-1247.06Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1047contigH-canaliculatus_F_contig1047:30055..31001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2.8e-14
Seed eggNOG ortholog5786.XP_003291002.1
KEGG koko:K14963
KEGG Pathwayko04934,map04934
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs3XD7W@554915,KOG0266@1,KOG0266@2759
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-00_002100.1
Exons2
Model size249
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928693.6991987-CDS-H-canaliculatus_F_contig1047:30054..302011622928693.6991987-CDS-H-canaliculatus_F_contig1047:30054..30201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1047 30055..30201 -
1696845528.0007124-CDS-H-canaliculatus_F_contig1047:30054..302011696845528.0007124-CDS-H-canaliculatus_F_contig1047:30054..30201Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1047 30055..30201 -
1622928693.7293108-CDS-H-canaliculatus_F_contig1047:30899..310011622928693.7293108-CDS-H-canaliculatus_F_contig1047:30899..31001Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1047 30900..31001 -
1696845528.0122917-CDS-H-canaliculatus_F_contig1047:30899..310011696845528.0122917-CDS-H-canaliculatus_F_contig1047:30899..31001Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1047 30900..31001 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1047.460.1prot_H-canaliculatus_F_contig1047.460.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1047 30055..31001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1047.460.1

>prot_H-canaliculatus_F_contig1047.460.1 ID=prot_H-canaliculatus_F_contig1047.460.1|Name=mRNA_H-canaliculatus_F_contig1047.460.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=83bp
MGYNDLGNDWQHSLVLATGSAEGSIHVFDLSNGQGEEMQTLRGHRDRVHS
ADFHPTEPKLVSCSADKTVRIWEPNRKRTGRK*
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mRNA from alignment at H-canaliculatus_F_contig1047:30055..31001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1047.460.1 ID=mRNA_H-canaliculatus_F_contig1047.460.1|Name=mRNA_H-canaliculatus_F_contig1047.460.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=947bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1047:30055..31001- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGTACAACGACCTCGGGAATGACTGGCAGCACTCGCTGGTGTTGGC GACCGGCAGCGCGGAGGGGAGCATCCACGTGTTCGACCTGTCGAACGGAC AGGTGCGTTTTTCCGTCTTGAGAGAAACATAACAGCATCGTAGGAACGCC TCCTGAGGTACGTCGTGAGAGGAGTAGCTCGAGGCCCCTGTTGAGCTCAG CTTCGAACAAGGAGGGTTCATCGGTGTGCAATGTTGGGACAAAAGAAACG CAGGAAAGGAAACTTTGGCAACTTGCCGCAATTTCGTGTACGGCAATGCG TTTTTCCTCACCTTTTTTTTTGTACGTCTTCAACCGACGACTCCCAACCA TCGTGCGTACCCGCGAGTGGTCGAAGTAAAACGCACACGGATGCGGCCGG AAGAGGCGGGTTTTCGGCGGCAAGAGTCTGGCCGAGACACGGGAGCAGGT GCATCTGCTCCAAAGCGCGCAGCGACTTCCGTCCGAAGTGATCCTTGTTT CGTCTTTCTTTTCCATCCGCCTGACAGCGTACTGCGGAATAACAAAACCC CTACAGTTTTCGGTATATTTTGCTTTCTTTGGGTGCCTCTCGCTGACGTG CCCCTATGGCGAGAAAGTCCATCGATGGGATCACAGCAGTATTTGTACAT ACTCCTGTGTCATCCGCGCAGCCAATCGAACCGGATCGGAGTCGATTTTT TTTTTTCAACAAATAGATCCGCCCCTCCCCCCCCCGCCGCCGCCCGGTGC CGATGACCCCCCGGGGCGCCTGGCTTGTCCACCTCGAACGCCTCCGACAG GGCGAGGAGATGCAGACGCTGCGGGGGCACCGAGACAGAGTGCACTCGGC CGACTTCCACCCGACGGAGCCGAAGCTCGTGTCCTGCAGCGCGGACAAGA CGGTGCGGATCTGGGAGCCGAACCGCAAGCGCACCGGGCGAAAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1047:30055..31001-

>mRNA_H-canaliculatus_F_contig1047.460.1 ID=mRNA_H-canaliculatus_F_contig1047.460.1|Name=mRNA_H-canaliculatus_F_contig1047.460.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1047:30055..31001- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGTACAACGACCTCGGGAATGACTGGCAGCACTCGCTGGTGTTGGC
GACCGGCAGCGCGGAGGGGAGCATCCACGTGTTCGACCTGTCGAACGGAC
AGATGGGGTACAACGACCTCGGGAATGACTGGCAGCACTCGCTGGTGTTG
GCGACCGGCAGCGCGGAGGGGAGCATCCACGTGTTCGACCTGTCGAACGG
ACAGGGCGAGGAGATGCAGACGCTGCGGGGGCACCGAGACAGAGTGCACT
CGGCCGACTTCCACCCGACGGAGCCGAAGCTCGTGTCCTGCAGCGCGGAC
AAGACGGTGCGGATCTGGGAGCCGAACCGCAAGCGCACCGGGCGAAAGTG
AGGCGAGGAGATGCAGACGCTGCGGGGGCACCGAGACAGAGTGCACTCGG
CCGACTTCCACCCGACGGAGCCGAAGCTCGTGTCCTGCAGCGCGGACAAG
ACGGTGCGGATCTGGGAGCCGAACCGCAAGCGCACCGGGCGAAAGTGA
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