mRNA_H-canaliculatus_F_contig10411.425.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10411.425.1
Unique NamemRNA_H-canaliculatus_F_contig10411.425.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10411.425.1 vs. uniprot
Match: A0A6H5JMN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.950e-18
Identity = 94/202 (46.53%), Postives = 108/202 (53.47%), Query Frame = 1 
Query:    1 QLSAGGSPNISAPHPGPAAHKRRRASXXXXXXXXXXXGGSGDFSYSPYQPMVIATTSASVSPRPRRASXXXXXXXXXLLLHQQHTGGEGEGRQGQDTGGPTLDQCLVLPAGLALEIDGLLSASTAKSGAAPESEVS---------GXXXXXXXXXXXXXXXENSLGGGDGERDYSD-----PGAGRGDD----RAIISSYHF 552
            +LSAGG+     P   P+        XXXX         S DFS+SPYQPMVI TTS+SVSPRPRRAS         L       G + + R+    GGPTLDQCLVLP+G+AL+IDGLLS S    GA  E  VS              XXXXXXXXX   NSL     E+D +      PGA R DD    RAIISS+HF
Sbjct:   54 KLSAGGAATAGRPRAEPSVPSSXXXXXXXXASGRRGRKSSADFSFSPYQPMVIETTSSSVSPRPRRASAPVPPTSL-LPFKPLMAGEKRQQREPGADGGPTLDQCLVLPSGVALKIDGLLSTS----GAERECGVSIGNGDGAGGADVDRXXXXXXXXXGSSNSL-----EKDGAGVACPLPGAERDDDDGGDRAIISSFHF 245
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BLAST of mRNA_H-canaliculatus_F_contig10411.425.1 vs. uniprot
Match: D7FM99_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM99_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.650e-10
Identity = 76/152 (50.00%), Postives = 85/152 (55.92%), Query Frame = 1 
Query:  151 MVIATTSASVSPRPRRASXXXXXXXXXLLLHQQHTGGEGEGRQGQDTGGPTLDQCLVLPAGLALEIDGLLSASTAKSGAAPESEVS---------GXXXXXXXXXXXXXXXENSLGGGDGERDYSD-----PGAGR----GDDRAIISSYHF 552
            MVI TTS+SVSPRPRRAS         L       G + + R+    GGPTLDQCLVLP+G AL+IDGLLS S    GA  E  VS              XXXXXXXXXXX NSL     E+D +      PGA R    G DRAIISS+HF
Sbjct:    1 MVIETTSSSVSPRPRRASEPVPPTSL-LPFKPLMAGEKRQQREPGANGGPTLDQCLVLPSGGALKIDGLLSTS----GAERECGVSIGNGDGAGGADADRXXXXXXXXXXXSNSL-----EKDGAGVACPLPGAEREDDNGGDRAIISSFHF 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10411.425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMN5_9PHAE1.950e-1846.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM99_ECTSI2.650e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10411contigH-canaliculatus_F_contig10411:3963..4514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size552
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928684.4766264-CDS-H-canaliculatus_F_contig10411:3962..45141622928684.4766264-CDS-H-canaliculatus_F_contig10411:3962..4514Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10411 3963..4514 +
1696845525.6656063-CDS-H-canaliculatus_F_contig10411:3962..45141696845525.6656063-CDS-H-canaliculatus_F_contig10411:3962..4514Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10411 3963..4514 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10411.425.1prot_H-canaliculatus_F_contig10411.425.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10411 3963..4514 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10411.425.1

>prot_H-canaliculatus_F_contig10411.425.1 ID=prot_H-canaliculatus_F_contig10411.425.1|Name=mRNA_H-canaliculatus_F_contig10411.425.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=184bp
QLSAGGSPNISAPHPGPAAHKRRRASGGRRRSKGGRGGGSGDFSYSPYQP
MVIATTSASVSPRPRRASAPVPPSSSSLLLHQQHTGGEGEGRQGQDTGGP
TLDQCLVLPAGLALEIDGLLSASTAKSGAAPESEVSGGGGGGGAAPQTRS
SSENSLGGGDGERDYSDPGAGRGDDRAIISSYHF
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mRNA from alignment at H-canaliculatus_F_contig10411:3963..4514+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10411.425.1 ID=mRNA_H-canaliculatus_F_contig10411.425.1|Name=mRNA_H-canaliculatus_F_contig10411.425.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10411:3963..4514+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCTCTCCGCTGGTGGTAGCCCCAACATCTCAGCCCCGCATCCTGGACC
GGCCGCACACAAGCGGCGGCGGGCGTCTGGCGGGCGACGGCGGAGCAAGG
GCGGGCGCGGCGGCGGGAGCGGAGACTTCAGCTACTCCCCTTACCAGCCC
ATGGTGATCGCGACCACCTCCGCGAGCGTGAGTCCGCGCCCCCGACGGGC
GAGCGCGCCCGTCCCGCCGTCCTCGTCTTCGTTGCTGCTGCACCAGCAGC
ACACGGGAGGGGAAGGGGAGGGGCGGCAGGGCCAGGACACGGGCGGGCCG
ACCCTCGATCAGTGCCTCGTGCTTCCCGCCGGGTTGGCGCTGGAGATTGA
CGGACTCCTCTCAGCTTCAACGGCGAAATCGGGGGCCGCGCCAGAGAGCG
AAGTGAGCGGTGGCGGTGGCGGTGGCGGTGCTGCCCCTCAGACGAGGTCT
TCTTCCGAGAACAGCCTGGGAGGGGGGGACGGCGAGCGCGATTATTCGGA
TCCGGGAGCGGGCCGAGGCGATGATCGGGCGATCATATCGAGCTATCACT
TC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10411:3963..4514+

>mRNA_H-canaliculatus_F_contig10411.425.1 ID=mRNA_H-canaliculatus_F_contig10411.425.1|Name=mRNA_H-canaliculatus_F_contig10411.425.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1104bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10411:3963..4514+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCTCTCCGCTGGTGGTAGCCCCAACATCTCAGCCCCGCATCCTGGACC
GGCCGCACACAAGCGGCGGCGGGCGTCTGGCGGGCGACGGCGGAGCAAGG
GCGGGCGCGGCGGCGGGAGCGGAGACTTCAGCTACTCCCCTTACCAGCCC
ATGGTGATCGCGACCACCTCCGCGAGCGTGAGTCCGCGCCCCCGACGGGC
GAGCGCGCCCGTCCCGCCGTCCTCGTCTTCGTTGCTGCTGCACCAGCAGC
ACACGGGAGGGGAAGGGGAGGGGCGGCAGGGCCAGGACACGGGCGGGCCG
ACCCTCGATCAGTGCCTCGTGCTTCCCGCCGGGTTGGCGCTGGAGATTGA
CGGACTCCTCTCAGCTTCAACGGCGAAATCGGGGGCCGCGCCAGAGAGCG
AAGTGAGCGGTGGCGGTGGCGGTGGCGGTGCTGCCCCTCAGACGAGGTCT
TCTTCCGAGAACAGCCTGGGAGGGGGGGACGGCGAGCGCGATTATTCGGA
TCCGGGAGCGGGCCGAGGCGATGATCGGGCGATCATATCGAGCTATCACT
TCCAGCTCTCCGCTGGTGGTAGCCCCAACATCTCAGCCCCGCATCCTGGA
CCGGCCGCACACAAGCGGCGGCGGGCGTCTGGCGGGCGACGGCGGAGCAA
GGGCGGGCGCGGCGGCGGGAGCGGAGACTTCAGCTACTCCCCTTACCAGC
CCATGGTGATCGCGACCACCTCCGCGAGCGTGAGTCCGCGCCCCCGACGG
GCGAGCGCGCCCGTCCCGCCGTCCTCGTCTTCGTTGCTGCTGCACCAGCA
GCACACGGGAGGGGAAGGGGAGGGGCGGCAGGGCCAGGACACGGGCGGGC
CGACCCTCGATCAGTGCCTCGTGCTTCCCGCCGGGTTGGCGCTGGAGATT
GACGGACTCCTCTCAGCTTCAACGGCGAAATCGGGGGCCGCGCCAGAGAG
CGAAGTGAGCGGTGGCGGTGGCGGTGGCGGTGCTGCCCCTCAGACGAGGT
CTTCTTCCGAGAACAGCCTGGGAGGGGGGGACGGCGAGCGCGATTATTCG
GATCCGGGAGCGGGCCGAGGCGATGATCGGGCGATCATATCGAGCTATCA
CTTC
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