mRNA_H-canaliculatus_F_contig10410.424.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10410.424.1
Unique NamemRNA_H-canaliculatus_F_contig10410.424.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10410.424.1 vs. uniprot
Match: D8LST9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST9_ECTSI)

HSP 1 Score: 439 bits (1129), Expect = 2.380e-154
Identity = 213/226 (94.25%), Postives = 221/226 (97.79%), Query Frame = 1 
Query:    1 MAAPASTARQIPIVCPGHSRPLAEVSYCPETPDGTFLISGCHAKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQIHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDVASPGSAPTEITVFPG-EETPKVSRVVSKARWGKDPNTIITGSADGFVRVWDVRSGDKVRKVQVAGAVMDLEISWDKSIATVAAGDTVHFFDT 675
            MAAPA+ ARQIPIVCPGHSRPLAEVSYCPETPDGTFLISGCHAKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQ+HEFVHKHIVKTVHFAADRSKLATAGHEGILRIFD ASPGS PTEITVFPG EETPKVSRV+SKARWGKDPNT++TGSADGFVRVWDVRSG+K+RKVQVAGAVMDLE+SWDK IATVAAGDTVHFFDT
Sbjct:    1 MAAPAAAARQIPIVCPGHSRPLAEVSYCPETPDGTFLISGCHAKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEITVFPGGEETPKVSRVISKARWGKDPNTVLTGSADGFVRVWDVRSGEKIRKVQVAGAVMDLEMSWDKKIATVAAGDTVHFFDT 226
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10410.424.1 vs. uniprot
Match: A0A6H5KS17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS17_9PHAE)

HSP 1 Score: 345 bits (886), Expect = 1.410e-117
Identity = 167/180 (92.78%), Postives = 176/180 (97.78%), Query Frame = 1 
Query:  139 MIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQIHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDVASPGSAPTEITVFPG-EETPKVSRVVSKARWGKDPNTIITGSADGFVRVWDVRSGDKVRKVQVAGAVMDLEISWDKSIATVAAGDTVHFFDT 675
            MIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQ+HEFVHKHIVKTVHFAADRSKLATAGHEGILRIFD ASPGS PTEITVFPG EETPKV+RV+SKARWGKDPNT++TGSADGFVRVWD+RSG+K+RKVQVAGAVMDLE+SWDK IATVAAGDTVHFFDT
Sbjct:    1 MIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEITVFPGGEETPKVARVISKARWGKDPNTVLTGSADGFVRVWDIRSGEKIRKVQVAGAVMDLEMSWDKKIATVAAGDTVHFFDT 180
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10410.424.1 vs. uniprot
Match: A0A835YS18_9STRA (WD40-repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS18_9STRA)

HSP 1 Score: 277 bits (708), Expect = 2.760e-90
Identity = 136/225 (60.44%), Postives = 169/225 (75.11%), Query Frame = 1 
Query:    1 MAAPAST-ARQIPIVCPGHSRPLAEVSYCPETPDGTFLISGCHAKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQIHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDVASPGSAPTEITVFPGEETPKVSRVVSKARWGKDPNTIITGSADGFVRVWDVRSGDKVRKVQVAGAVMDLEISWDKSIATVAAGDTVHFFD 672
            MA+P S  +RQIPIVCPGHSRPL EV + PETPDG FL+SGCHAKTPM+R G TGDWIGTF GHKGAVWGVALD   ++AATASADFSARLWDA++G   HE+ HKHIVK V F+ D + LAT GHEGI+R+F VA P   P + +V     T      ++K RWG +P+ +++GS+DG VR+WD R+ + +++V+V GAVMD+E+S   SI TVAAGD V F D
Sbjct:    1 MASPESVISRQIPIVCPGHSRPLTEVVFSPETPDGVFLMSGCHAKTPMLRRGDTGDWIGTFEGHKGAVWGVALDPQAMIAATASADFSARLWDAISGKLTHEWPHKHIVKGVDFSQDSTTLATGGHEGIVRLFQVAQPDEEPRQFSVSSERTT------INKVRWGLEPHQLLSGSSDGAVRMWDARTLELLKEVRVEGAVMDMEVSKPMSIITVAAGDKVTFLD 219
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10410.424.1 vs. uniprot
Match: A0A7S2XYA9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYA9_9STRA)

HSP 1 Score: 247 bits (630), Expect = 2.030e-78
Identity = 125/216 (57.87%), Postives = 158/216 (73.15%), Query Frame = 1 
Query:   25 RQIPIVCPGHSRPLAEVSYCPETPDGTFLISGCHAKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQIHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDVASPGSAPTEITVFPGEETPKVSRVVSKARWGKDPNTIITGSADGFVRVWDVRS-GD-KVRKVQVAGAVMDLEISWDKSIATVAAGDTVHF 666
            RQIPIVCPGHSRPL+ V Y   TPDG FLISGC  K PM+R G TGDWIGTF GHKGAVW   LD+   LAATAS DFSA+LW+A++G ++H+FVH+HIVKTV FA DRSKL + G EG+LRIFD++ P + P +      ++  + S  V+KA WG + + ++TG++DG VR WD+RS GD  V++V V GAVMD+E+S D    TVAAG  V+F
Sbjct:    6 RQIPIVCPGHSRPLSNVHYSAVTPDGFFLISGCLDKLPMLRRGDTGDWIGTFEGHKGAVWCAKLDNDATLAATASGDFSAKLWNAISGEEMHQFVHRHIVKTVEFAPDRSKLISGGQEGLLRIFDLSRPEADPDQANHKQPDQ--QGSLAVTKAVWGAEADLVVTGTSDGTVRTWDLRSLGDGPVKEVSVEGAVMDMEMSRDSRTVTVAAGTQVNF 219
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10410.424.1 vs. uniprot
Match: A0A7S2LD36_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LD36_9STRA)

HSP 1 Score: 219 bits (559), Expect = 2.890e-67
Identity = 118/233 (50.64%), Postives = 147/233 (63.09%), Query Frame = 1 
Query:   16 STARQIPIVCPGHSRPLAEVSYCP-------ETPDGTFLISGCHAKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQIHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDVASPGSAPTEITVFPGEETPKVSRVVSKARWGKDPNTIITGSADGFVRVWDVRSGDKVRKVQVAGAVMD-------LEISWDKSIATVAAGDTVHFFD 672
            +T RQIPIVCPGH+RPLAE+ +C        E    TFLIS CH K PM+R+G+TGDWIGTF GHKGAVW   LD   LLA TAS DFS ++WDA+TG  +H F HKH+VKTV ++ D  +LAT GHEGILRIFD++ P   P    +F      KVS  +SK  W  D +T++    DG +R W+V   D  +++  A AV D       L +S  K I TVAAG+ V FFD
Sbjct:   17 TTGRQIPIVCPGHTRPLAELQFCSISENDSDEKQQRTFLISACHDKMPMLRDGATGDWIGTFAGHKGAVWSCRLDPAALLAGTASGDFSVQVWDAITGQSLHSFPHKHVVKTVDWSLDSKRLATGGHEGILRIFDMSQPKKEPL---MFDQSSKEKVS--ISKCNW-LDNSTVLAAGEDGNIRFWNVDETDPSKQLTKALAVGDSIRDMELLTLSSGKRILTVAAGEKVTFFD 243
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10410.424.1 vs. uniprot
Match: A0A2D4BZH8_PYTIN (WD domain-containing protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZH8_PYTIN)

HSP 1 Score: 217 bits (552), Expect = 2.530e-66
Identity = 115/228 (50.44%), Postives = 143/228 (62.72%), Query Frame = 1 
Query:   25 RQIPIVCPGHSRPLAEVSYCPETPDGTFLISGCHAKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQIHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDVASP--------GSAPTEITVFPGEETPKVSRVVSKARWGK----DPNTIITGSADGFVRVWDVRSGDKVRKVQVAGAVMDLEISWDKSIATVAAGDTVHFFD 672
            RQIPIVCPGHSRPLAEV Y   TPDG FLIS CH K PM+R G +GDWIGTF GHKGAVW   +D +   AAT SADFS +LWDA+TG+ I    HKHIVK V F  D ++L TAGHE +LR+FD+ +             T I V P    P V+++ +K +  K         +TG  DG + VW++ S DKV + +V   VMD+E S   ++ TVAAG  V+FFD
Sbjct:   15 RQIPIVCPGHSRPLAEVQYSAITPDGVFLISACHDKLPMLRRGDSGDWIGTFEGHKGAVWSATIDASAQFAATGSADFSVKLWDALTGDVITTLEHKHIVKAVAFTPDGTRLLTAGHEKLLRVFDLQTVKEQLEMYRADGRTGIVVMP---PPAVAQMATKEQIRKVVVLSDRLAVTGEVDGTITVWNLDSSDKVTEFKVDAGVMDMEASRRGTVLTVAAGKKVYFFD 239
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10410.424.1 vs. uniprot
Match: A0A7R9Z9Z2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z9Z2_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.070e-65
Identity = 111/227 (48.90%), Postives = 151/227 (66.52%), Query Frame = 1 
Query:   16 STARQIPIVCPGHSRPLAEVSYCP---ETPDGTFLISGCHAKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQIHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDVASPGSAPTEITVFPGEETPKVSRVVSKARWGKDPNTIITGSADGFVRVWDVRSGDK--VRKVQVAGAVMDLEISWDKS---IATVAAGDTVHFFD 672
            S +RQIPIVCPGH+RPLAE+ +C    +    TFL+S CH K PM+R+G TGDWIGTF GHKGAVW   LD +G +AATAS DFS ++WDA+TG +++ F HKHIVK + F+ D  +LAT GHEG+LR++D+  P + P  +   P  E  K++  ++K  W  D + I+   +DG +R WDV S +   +R +QV   V D+E+S   S   + TVAAG  V+FFD
Sbjct:   34 SGSRQIPIVCPGHTRPLAELQFCAVNDKDESRTFLVSACHDKMPMVRDGVTGDWIGTFAGHKGAVWCCRLDPSGYIAATASGDFSVKVWDAITGKELYAFPHKHIVKALDFSPDSRRLATGGHEGLLRVYDIGQPNAEPLAV---PQLEDKKIT--ITKCNW-LDDDVILAACSDGGIRFWDVSSKESNLLRTLQVDAEVRDMELSRLSSGECLLTVAAGTKVNFFD 254
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10410.424.1 vs. uniprot
Match: B8CFL5_THAPS (WD40-repeat protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFL5_THAPS)

HSP 1 Score: 214 bits (545), Expect = 1.870e-65
Identity = 114/231 (49.35%), Postives = 149/231 (64.50%), Query Frame = 1 
Query:   25 RQIPIVCPGHSRPLAEVSYCP--ETPDG-----TFLISGCHAKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQIHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDVASPGSAPTEITVFPGEETPKVSRVVSKARWGKDPNTIITGSADGFVRVWDVRSGDKV----RKVQVAGAVMDLEI----SWDKSIATVAAGDTVHFFD 672
            RQIPIVCPGH+RPLAE+ +C   + P+G     TFL+S CH K PM+R+  +GDWIGTF GHKGAVW   LD    L ATAS DFS ++WDA+TG+ +H F HKH+VK+  ++ D  +LAT G+EGILR+FD+  P  AP E   F   E   VS  +SK  W  D +T++   +DG +R W+V + D      R +QV   V D+E+    S +K+I TVAAGD V FFD
Sbjct:   14 RQIPIVCPGHTRPLAELQFCSVNDNPNGDDEPRTFLVSACHDKCPMVRDAESGDWIGTFKGHKGAVWSCRLDPAAFLGATASGDFSVKVWDAITGSPLHSFPHKHVVKSCDWSPDSKRLATGGNEGILRVFDIVHPEKAPLE---FVQSEKEVVS--ISKCNW-IDNHTVLAACSDGSIRFWNVDASDPTQQLTRTLQVKDGVRDMELQALSSNNKTILTVAAGDKVTFFD 238
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10410.424.1 vs. uniprot
Match: K3WFN9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFN9_GLOUD)

HSP 1 Score: 213 bits (543), Expect = 6.420e-65
Identity = 114/229 (49.78%), Postives = 143/229 (62.45%), Query Frame = 1 
Query:   25 RQIPIVCPGHSRPLAEVSYCPETPDGTFLISGCHAKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQIHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDVAS--------PGSAPTEITVFPGEETPKVSRVVSKARWGK----DPNTIITGSADGFVRVWDVRSGDKVRKVQV-AGAVMDLEISWDKSIATVAAGDTVHFFD 672
            RQIP+VCPGHSRPLAEV Y P TPDG FLIS CH K PM+R   TGDWIGTF GHKGAVW   +D +   AAT SADFS + WDA++G+ I  F HKHIVK+V F  D ++L TAGHE +LR++D+ +             T I V P   TP    + +K +  K         +TG  DG + VW++ S  KV + +V AG VMD+E S   S+ TVAAG  V+F+D
Sbjct:   14 RQIPVVCPGHSRPLAEVQYSPVTPDGCFLISACHDKLPMLRRADTGDWIGTFEGHKGAVWSATIDASAQFAATGSADFSVKFWDALSGDVITTFEHKHIVKSVAFTPDGARLLTAGHEKLLRVYDLLTVKEQFEHYKSEGRTGIFVPP---TPPTLELATKDQIRKVVVISDALAVTGEVDGTITVWNLESAQKVHEFKVDAGGVMDMEASRKNSVLTVAAGKKVYFYD 239
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10410.424.1 vs. uniprot
Match: A0A8K1CFG7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFG7_PYTOL)

HSP 1 Score: 211 bits (538), Expect = 3.530e-64
Identity = 115/229 (50.22%), Postives = 145/229 (63.32%), Query Frame = 1 
Query:   25 RQIPIVCPGHSRPLAEVSYCPETPDGTF-LISGCHAKTPMIRNGSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQIHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDVAS--------PGSAPTEITVFPGEETPKVSRVVSKARWGK----DPNTIITGSADGFVRVWDVRSGDKVRKVQVAGAVMDLEISWDKSIATVAAGDTVHFFD 672
            RQIPIVCPGHSRPLAEV Y P T DGTF LIS CH K PM+R G TGDWIGTF GHKGAVW   LD     AA+ SADFS +LWDA +G+ I  F HKHIVK+V F  D S+L T GHE + R++D+ S             T I V P   TP V+++ +K +  K    + +  +TG  DG + VW++ + +K  + +V   VMDLE S + ++ TVAAG  V+FFD
Sbjct:   17 RQIPIVCPGHSRPLAEVQYSPITSDGTFFLISACHDKLPMLRRGDTGDWIGTFEGHKGAVWAAKLDHKVQFAASGSADFSVKLWDANSGDLITTFEHKHIVKSVEFTPDDSRLLTVGHEKLFRVYDLLSIKEQFETYRADGRTGIVVMP---TPPVAQMTTKEQIRKVVVLNDHVAVTGEVDGTLTVWNLHTYEKTSEFKVDAGVMDLEASRNGTVITVAAGKKVYFFD 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10410.424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LST9_ECTSI2.380e-15494.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KS17_9PHAE1.410e-11792.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YS18_9STRA2.760e-9060.44WD40-repeat protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2XYA9_9STRA2.030e-7857.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2LD36_9STRA2.890e-6750.64Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A2D4BZH8_PYTIN2.530e-6650.44WD domain-containing protein, putative n=1 Tax=Pyt... [more]
A0A7R9Z9Z2_9STRA1.070e-6548.90Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
B8CFL5_THAPS1.870e-6549.35WD40-repeat protein n=1 Tax=Thalassiosira pseudona... [more]
K3WFN9_GLOUD6.420e-6549.78Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1CFG7_PYTOL3.530e-6450.22Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10410contigH-canaliculatus_F_contig10410:602..4594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score440.7
Seed ortholog evalue4.2e-121
Seed eggNOG ortholog2880.D8LST9
Preferred nameSTRAP
KEGG koko:K13137
KEGG Pathwayko03013,map03013
KEGG ModuleM00426
GOsGO:0000122,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001894,GO:0001932,GO:0001933,GO:0002009,GO:0002165,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007586,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010632,GO:0010633,GO:0010646,GO:0010648,GO:0010669,GO:0010717,GO:0010719,GO:0016043,GO:0016070,GO:0016071,GO:0017015,GO:0019219,GO:0019220,GO:0019222,GO:0022600,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023057,GO:0030277,GO:0030334,GO:0030336,GO:0030512,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032797,GO:0032879,GO:0032991,GO:0034622,GO:0034641,GO:0034719,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040012,GO:0040013,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045892,GO:0045934,GO:0045936,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051270,GO:0051271,GO:0060249,GO:0060255,GO:0060393,GO:0060394,GO:0060429,GO:0060562,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0120114,GO:1901360,GO:1902679,GO:1903506,GO:1903507,GO:1903844,GO:1903845,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2000146,GO:2001141
EggNOG free text desc.negative regulation of transforming growth factor beta receptor signaling pathway
EggNOG OGsKOG0278@1,KOG0278@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-15_002630.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons4
Model size675
Cds size675
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10410.424.1prot_H-canaliculatus_F_contig10410.424.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10410 602..4594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928684.4013271-CDS-H-canaliculatus_F_contig10410:601..7281622928684.4013271-CDS-H-canaliculatus_F_contig10410:601..728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10410 602..728 +
1696845525.6121428-CDS-H-canaliculatus_F_contig10410:601..7281696845525.6121428-CDS-H-canaliculatus_F_contig10410:601..728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10410 602..728 +
1622928684.4140916-CDS-H-canaliculatus_F_contig10410:2236..23531622928684.4140916-CDS-H-canaliculatus_F_contig10410:2236..2353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10410 2237..2353 +
1696845525.627546-CDS-H-canaliculatus_F_contig10410:2236..23531696845525.627546-CDS-H-canaliculatus_F_contig10410:2236..2353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10410 2237..2353 +
1622928684.4249756-CDS-H-canaliculatus_F_contig10410:2931..31161622928684.4249756-CDS-H-canaliculatus_F_contig10410:2931..3116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10410 2932..3116 +
1696845525.6391659-CDS-H-canaliculatus_F_contig10410:2931..31161696845525.6391659-CDS-H-canaliculatus_F_contig10410:2931..3116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10410 2932..3116 +
1622928684.4347968-CDS-H-canaliculatus_F_contig10410:4348..45941622928684.4347968-CDS-H-canaliculatus_F_contig10410:4348..4594Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10410 4349..4594 +
1696845525.6536736-CDS-H-canaliculatus_F_contig10410:4348..45941696845525.6536736-CDS-H-canaliculatus_F_contig10410:4348..4594Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10410 4349..4594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10410.424.1

>prot_H-canaliculatus_F_contig10410.424.1 ID=prot_H-canaliculatus_F_contig10410.424.1|Name=mRNA_H-canaliculatus_F_contig10410.424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=225bp
MAAPASTARQIPIVCPGHSRPLAEVSYCPETPDGTFLISGCHAKTPMIRN
GSTGDWIGTFVGHKGAVWGVALDDTGLLAATASADFSARLWDAVTGNQIH
EFVHKHIVKTVHFAADRSKLATAGHEGILRIFDVASPGSAPTEITVFPGE
ETPKVSRVVSKARWGKDPNTIITGSADGFVRVWDVRSGDKVRKVQVAGAV
MDLEISWDKSIATVAAGDTVHFFDT
back to top

mRNA from alignment at H-canaliculatus_F_contig10410:602..4594+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10410.424.1 ID=mRNA_H-canaliculatus_F_contig10410.424.1|Name=mRNA_H-canaliculatus_F_contig10410.424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3993bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10410:602..4594+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGCACCAGCCAGCACCGCAAGACAGATCCCGATCGTGTGCCCTGG
ACACTCCCGCCCTCTAGCAGAAGTATCCTACTGCCCAGAGACCCCCGATG
GGACTTTCCTGATCAGTGGTTGTCATGGTGAGTGACGGTGGAGAGCAAAG
GCCATGTACGGTCCGTATCCCAAAGTTCGCGAAATATCAAACAACGGGGG
TGGGCGTTTGATTGGATGAGTACCCTGCTTCTGGGCGGTTGGCTACATCT
CCGTGAGGGAGCCTGGCTGCCGAGCTCAGCACGTTTCGCGGAACAGCACA
ACGACAACCCTTTCTTGCTTCCGGCCAGCAAAAGATTGAATGATGTCTCC
GCTTTCTTTTGCCACGTGAGTTCATGTGGGCTTCTCTTTTTGCGTGACGC
TGTCGCTGAGATCACCGGCCTTCGGTGGCGACGTCGCACCAAGAGATGTT
CTCAAACTCTCAAAACACGTCCTCGAGCGAAGGCGAGGGTGCCTGTATAA
CCTCGTTCTAGAGGCAACACCTCGGAAGAACTACTGTGTGTACTGGTGTG
TTTTGGTTCAGACGGAGATGTCTTTGTCCATCGCCCCTGGGCAAGAGGAC
ACACTGCTGTGCGGGTTCAACATCCTGCAAGTACGTCGGCGTAATGTTCT
CTGAGCGCGGTACAACTACAGCAATTGCTAGCCGCGCCGTTACTCGGCAC
CTATCGATACGAGTAGTCTTCGTGCAACGTTTTCCTGGTGTAATGCAAAG
GAGAGGTAGAGTCTCCGATGGTTGGGGGAAAGGCTTCAAACTTGTGTAAT
GTTTCCTTCTTGATCGGAGGGTGGCGGAGTGAACTTGTGGAACGTGTGCT
AGGAGGTGAACACATGCGAAAGCTGCAGCTGCTGCTTCGTGGTTCACCGC
CGATCGTAGCAGTCGAAACGGCGGTGGCTGGGTGGATGTGCTCGCACGAG
AAATCCGAGCAAAGTCGTGGCCTCGGCCTTTGATGTGTTTGTCTCGGGGC
ATACTGAACCGAACACGGATACGTACGAGGCGATTCATTTTTTTCTACAC
GCTCTTGAGCAGTTGACTCATTGCCTCGTCTAACTACGATAGTGTCGGCG
ATTGGAAGCTGAACGGTCGAACTCGCACTTTTCGCGAGTAAGTTCGCCGC
GACCGTGTCGCGTCTACTCTGATTGCAACCATCCCCTAGTCATTTACGTC
GCCTTTTTGCGAATTTCTCAAAAATCTACTCTACTTCTTGGGTAGTACAG
CAGCCATGCGAGAGGACTCTGTGAGACACCGTTGTTGTTGTAGCCACGTA
GCCGTTGGGTGCTGTCTTTTCGACGAACACCAACTACGCTGTAGATTAGA
GGGGGAAGGCGATACACCGTCCCATCCAACGGCGTCGTCGAAGGACCGCG
ATTGCGGCGAGGCAGCGGTTCGTGGCAGTCGAAATGCCTACGCCTTGCAT
TTGGCTGGCTGCTCGAATTCTGGACGAGAGAGAGAGCCCCGCGAGGGGGA
ATTTCCGAAGCTCGCTGAACCCAATCTCCTTCCCGAAAGATATCGAAGCA
TTCACGACTTTGTCCATGTTTCGTCGTTTTGTCCCCTTTTTCGTATCTGT
GGAACCGCCAATTATGAATAAACCAAACCTCGCAGCCAAGACCCCAATGA
TCCGCAACGGCTCTACGGGAGACTGGATCGGGACGTTTGTCGGGCACAAG
GGGGCGGTATGGGGGGTGGCGCTGGACGACACCGGCCTGCTAGCGGCTAC
AGGTGTGAGCGCCTGCGTGTCACGTGTGATTGTTTCTTGTTTGCATCGAC
CCAATTTGTCGGATTTCAGGACCACCAAGATGTTTCCAGTCCAACGATGA
AGAGGTCCGGCCTGCACGTGTGTTCGACGCTTGTTCGTTACTTGTATTTA
TTAGCGTCGATGGTCGTTATCGGCTGTCTTCGGTCGAAGGTATCGCTTGC
GCTCCACTGCCGCCCAATCGAAGGTCGCCAGTCCCAACGAGAAGCGAACA
GTTAATCTATCCGCATCGCTGTGCCTGACGATGGGGAGAAGCCTCCAAAA
AGCCGGACCGAGAATCATAGACCTCTCAATTTATAGTTCATCATGCTCAG
GAGGAGATGGCCGTCTATCGCCACGCTTCTGACGCTTCTTGCTCCCTCCG
CCCTCTTCCTGCGGTCATTCAAGGCAGGGGAAATGTTGGGGTTTTGCGCT
GGCGTCGGTCCGATGTATCTCCCACGCTTCACACACGTACGTGTGAGTCA
ATCTGCGTTCCGGGGTGTCGCGGCAAATAGCGAGTAACATGATCGACTGC
CCCCCCCTCCCCACCGCCGCCCGAAAACAGCGTCGGCGGATTTCTCCGCA
CGGCTGTGGGACGCAGTCACGGGGAACCAAATCCACGAGTTCGTGCACAA
GCACATCGTCAAGACGGTGCACTTCGCCGCAGATCGGTCCAAGCTAGCCA
CGGCCGGCCACGAGGGCATCCTCAGGATTTTTGACGTGGCTTCCCCGGGT
AGCGCCCCGACCGAGGTAGGAAGGGGTACGTGCATGCCATGTGCGTGGCG
TGATTTGTCGACGACGGCGTGGTTCGAGTACGGTTGATTCGTCGTCGTCG
TCGTCGAGGCCTTCGAGGCTGACATCGTTGGTATTGGGTGTCGATAATGC
CGATGCTGCTGCTGTCGTAGCCGGGTCTCGTGCATCCGTGGTCACAGCAA
CGTGCCGTGGAAGAAGCGTATGCGTGGATGGTATCGCTCTTGTGTTCTCT
TGAATTTCCCGGCGTTCTCGTCCCAAAATATGTACACTGCATCTTCTTTT
CGGTCGTCTCGTGAAGGCGTACCGTCTCCCGGTCGTTCTTCGTCTGAGAG
TGTACACAACCATGTCCCGGGTTTACGACGTATGTCCGTATTGCAGCGTC
TTCGTAACAGGTAATGCCACCTTGCTTGTTGTGTCACCAAATGTGATACC
ATTAGTGAAGAGCTTGTTTTCAACCCAACTACGGTATATGACACAAAATA
ACACACCCCCTGGACGGATTTTAAAACCTCAATTTCTCCACAGCAAGAGG
CACACCAGTCCCAAAAAGAGTGGCGTTGGGGAGATCTCTTCGAGATCTGG
CAGAAAACATGTCATTTGAGGTTGGAATCGTACTCGTTGCGGAGTAACCG
AGCTTTGAAAATCGGTCCAAGGGGTGTGTTATCTTGTGTCATATACGGTA
GAACACTCCGACTCACCTTCCTCCCTCACAAGAAACGCTAGTTTCGTAAA
CGACTGATTTCGCACGAAGGCCTCGGTACCATACTTCGGAGTAGGAAAGG
CATGATGTTTGTCACGTCGCCTACACCACAGATTCTCTTTCGCTAGCAGA
GACCCCGAAGGCTTGGCTTATTACGACAACCACACGTTTTCGCTTCTTTC
TGCGCTTAGCCTGCATATGGATTTCGCTTCCTTTGCTACGAACGCCACCA
CCGAGAGACTCTTTTCGGCCATTTTTTGTCTTCGTTTTCTCCGTCTCACG
CTTGTACGTACAATTGTAATACTCCTCCTGTCTCCCTCGGAAGGCTTCGT
TCGTCGAGTCAGTGTCGTCTTTCGATCACAAACGTGCGGCATCCGCAGGT
ACTTTCCAGTCCTACCTCTCTACGGAGAAGACTACCCCGTAACCTCCTGT
TGCCGCAAGCACACTGCCCTAGAACCCTTCATGCATCACTCACACAGCTC
TTGCCTCCCCCCCCCTGTTCGGGCGCACGCCCGGTTCCCCCCCGAAGATC
ACGGTGTTCCCCGGAGAAGAGACACCAAAGGTGTCTCGGGTGGTCTCCAA
GGCGAGGTGGGGAAAGGACCCCAACACCATCATCACCGGGTCGGCGGACG
GTTTTGTTAGGGTGTGGGACGTGCGAAGCGGGGATAAGGTGCGGAAGGTG
CAGGTGGCCGGGGCGGTCATGGACCTGGAGATCTCGTGGGACAAGTCCAT
CGCCACCGTCGCGGCGGGGGACACGGTGCACTTCTTTGACACA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10410:602..4594+

>mRNA_H-canaliculatus_F_contig10410.424.1 ID=mRNA_H-canaliculatus_F_contig10410.424.1|Name=mRNA_H-canaliculatus_F_contig10410.424.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1350bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10410:602..4594+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGCACCAGCCAGCACCGCAAGACAGATCCCGATCGTGTGCCCTGG
ACACTCCCGCCCTCTAGCAGAAGTATCCTACTGCCCAGAGACCCCCGATG
GGACTTTCCTGATCAGTGGTTGTCATGATGGCGGCACCAGCCAGCACCGC
AAGACAGATCCCGATCGTGTGCCCTGGACACTCCCGCCCTCTAGCAGAAG
TATCCTACTGCCCAGAGACCCCCGATGGGACTTTCCTGATCAGTGGTTGT
CATGCCAAGACCCCAATGATCCGCAACGGCTCTACGGGAGACTGGATCGG
GACGTTTGTCGGGCACAAGGGGGCGGTATGGGGGGTGGCGCTGGACGACA
CCGGCCTGCTAGCGGCTACAGCCAAGACCCCAATGATCCGCAACGGCTCT
ACGGGAGACTGGATCGGGACGTTTGTCGGGCACAAGGGGGCGGTATGGGG
GGTGGCGCTGGACGACACCGGCCTGCTAGCGGCTACAGCGTCGGCGGATT
TCTCCGCACGGCTGTGGGACGCAGTCACGGGGAACCAAATCCACGAGTTC
GTGCACAAGCACATCGTCAAGACGGTGCACTTCGCCGCAGATCGGTCCAA
GCTAGCCACGGCCGGCCACGAGGGCATCCTCAGGATTTTTGACGTGGCTT
CCCCGGGTAGCGCCCCGACCGAGCGTCGGCGGATTTCTCCGCACGGCTGT
GGGACGCAGTCACGGGGAACCAAATCCACGAGTTCGTGCACAAGCACATC
GTCAAGACGGTGCACTTCGCCGCAGATCGGTCCAAGCTAGCCACGGCCGG
CCACGAGGGCATCCTCAGGATTTTTGACGTGGCTTCCCCGGGTAGCGCCC
CGACCGAGATCACGGTGTTCCCCGGAGAAGAGACACCAAAGGTGTCTCGG
GTGGTCTCCAAGGCGAGGTGGGGAAAGGACCCCAACACCATCATCACCGG
GTCGGCGGACGGTTTTGTTAGGGTGTGGGACGTGCGAAGCGGGGATAAGG
TGCGGAAGGTGCAGGTGGCCGGGGCGGTCATGGACCTGGAGATCTCGTGG
GACAAGTCCATCGCCACCGTCGCGGCGGGGGACACGGTGCACTTCTTTGA
CACAATCACGGTGTTCCCCGGAGAAGAGACACCAAAGGTGTCTCGGGTGG
TCTCCAAGGCGAGGTGGGGAAAGGACCCCAACACCATCATCACCGGGTCG
GCGGACGGTTTTGTTAGGGTGTGGGACGTGCGAAGCGGGGATAAGGTGCG
GAAGGTGCAGGTGGCCGGGGCGGTCATGGACCTGGAGATCTCGTGGGACA
AGTCCATCGCCACCGTCGCGGCGGGGGACACGGTGCACTTCTTTGACACA
back to top