mRNA_H-canaliculatus_F_contig10402.419.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10402.419.1
Unique NamemRNA_H-canaliculatus_F_contig10402.419.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10402.419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10402contigH-canaliculatus_F_contig10402:283..1789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size711
Cds size711
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10402.419.1prot_H-canaliculatus_F_contig10402.419.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10402 283..1789 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928683.546728-CDS-H-canaliculatus_F_contig10402:282..3351622928683.546728-CDS-H-canaliculatus_F_contig10402:282..335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10402 283..335 +
1696845525.181557-CDS-H-canaliculatus_F_contig10402:282..3351696845525.181557-CDS-H-canaliculatus_F_contig10402:282..335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10402 283..335 +
1622928683.5660145-CDS-H-canaliculatus_F_contig10402:1063..13041622928683.5660145-CDS-H-canaliculatus_F_contig10402:1063..1304Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10402 1064..1304 +
1696845525.1944356-CDS-H-canaliculatus_F_contig10402:1063..13041696845525.1944356-CDS-H-canaliculatus_F_contig10402:1063..1304Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10402 1064..1304 +
1622928683.584803-CDS-H-canaliculatus_F_contig10402:1372..17891622928683.584803-CDS-H-canaliculatus_F_contig10402:1372..1789Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10402 1373..1789 +
1696845525.2037232-CDS-H-canaliculatus_F_contig10402:1372..17891696845525.2037232-CDS-H-canaliculatus_F_contig10402:1372..1789Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10402 1373..1789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10402.419.1

>prot_H-canaliculatus_F_contig10402.419.1 ID=prot_H-canaliculatus_F_contig10402.419.1|Name=mRNA_H-canaliculatus_F_contig10402.419.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=237bp
GVTARIQKLLGPRPCATSSGSTTTPSGRRPRNPQPTRATRTVLLLPRAAV
GETTAKSISSSSSDKVVKAGLLTETKETEKSATQMVVVPVPVAAAAAAQQ
QQQQQQQSPPPRERRVRGARDAGVCAAEPSCSDGTRGTSNSSSGSSAGRT
RGHGSKQQADTDEEGQGYDDVPATEAQRDSELPTQFPGVRDAFESEVPTQ
FTGALGAHDAAFSGSDDDRRGDGGGSRRDARRVDRGA
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mRNA from alignment at H-canaliculatus_F_contig10402:283..1789+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10402.419.1 ID=mRNA_H-canaliculatus_F_contig10402.419.1|Name=mRNA_H-canaliculatus_F_contig10402.419.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1507bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10402:283..1789+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTGACAGCCAGGATTCAGAAGCTACTAGGACCCCGGCCTTGCGCGAC
GAGGTAGGTGAAGCGCCGCGGAGTATGCGGTTTTGGTCGGGCCCGCCACG
CGACGTAGCCCCCCCCCGCCCCGATAATGTGGTCGGTTCTCCGGTTCTTT
GGTTCTCTTTCTGGAGCCACAATGTGGCTGCGGCGACAAAAAGTCGCGAG
AACGAAGTATGAGGTCGGCAGTTCGCCACAGCACAAGGAGCATCGGGGCA
ACACACGTGACCAAACACGCGCGATCCAACTAGACGTCGACGTTTTCAGG
GTGGGAAATGGCGGTGCGCATGAAAGCATCCGAAATGCGGGAATTAGCCC
ACCGAGCGCCCCTTGCTCCAACAAAAATGGTCGCGCTGTCACAGGTCACG
ACGTCCGATTCCAAACGGTCGGTGGACGTTGGCAGTAGACTTCCAATACA
GCCTGAGTTTTTCGGGTTACGGGACAATCATTTGCCTGTGTCAGGGCTTG
TGAGAACAAGGATATCTGCGTCACATGGCTTCTTGCCGCTGAAGATGTGC
AAAAGAACGAGCAATGAAGAAACGATTCTTGCGCACACAACATTCAGTCA
GTAGACGCGCGGCGCTCAAACCCTGTTCTCTGTCTCTCTCTGTCTCTCTC
TGTCTCTTGTCCGTGTGTGTGTCTGTCTGTCTGTCTGTCTGTCTGTCCCT
CTTTACGTCTCTCTCCATCTCTCCATAACTCCCTCTCGTCTACCTCCCTG
GCTCTCGTCTACCCCGCCCCCCCCCCCGCAGCAGCGGTTCGACAACAACC
CCTTCGGGGAGGCGCCCCAGGAACCCGCAACCGACGAGGGCTACGCGGAC
CGTCCTTCTTCTCCCTCGCGCCGCCGTGGGCGAAACGACCGCGAAGAGCA
TCAGCAGCAGCAGCAGCGACAAGGTGGTAAAGGCTGGTCTCCTCACGGAG
ACGAAGGAGACGGAAAAGTCGGCGACGCAGATGGTGGTGGTGCCCGTGCC
CGTGGCGGCGGCGGCGGCGGCTTCGACGAGGGGCGGCGGAACGGCAACGA
ACGGCGGAACTACCGTGACGGGGCTCAAGAACGACAACAACAACAACAAC
AACAACAACAACAACAATCACCACCACCACGAGAACGACGAGTGCGAGGT
GCCAGGGACGCTGGCGTCTGCGCGGCGGAACCGAGCTGCAGCGACGGAAC
GCGGGGCACCAGCAACAGCAGCAGCGGCTCATCCGCAGGGAGGACGAGGG
GACACGGGTCGAAGCAGCAGGCAGACACGGACGAAGAGGGTCAGGGCTAC
GACGACGTGCCGGCAACGGAGGCGCAGCGCGACTCGGAGCTCCCGACTCA
GTTCCCCGGGGTCCGCGACGCTTTCGAGTCGGAGGTGCCGACCCAGTTCA
CGGGAGCGCTAGGGGCGCATGATGCAGCGTTCAGCGGCAGCGACGATGAT
CGTCGCGGTGACGGTGGCGGCAGCAGACGAGACGCGAGGAGGGTAGATAG
GGGGGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10402:283..1789+

>mRNA_H-canaliculatus_F_contig10402.419.1 ID=mRNA_H-canaliculatus_F_contig10402.419.1|Name=mRNA_H-canaliculatus_F_contig10402.419.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1422bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10402:283..1789+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGTGACAGCCAGGATTCAGAAGCTACTAGGACCCCGGCCTTGCGCGAC
GAGGGGGTGACAGCCAGGATTCAGAAGCTACTAGGACCCCGGCCTTGCGC
GACGAGCAGCGGTTCGACAACAACCCCTTCGGGGAGGCGCCCCAGGAACC
CGCAACCGACGAGGGCTACGCGGACCGTCCTTCTTCTCCCTCGCGCCGCC
GTGGGCGAAACGACCGCGAAGAGCATCAGCAGCAGCAGCAGCGACAAGGT
GGTAAAGGCTGGTCTCCTCACGGAGACGAAGGAGACGGAAAAGTCGGCGA
CGCAGATGGTGGTGGTGCCCGTGCCCGTGGCGGCGGCGGCGGCGGCTCAG
CGGTTCGACAACAACCCCTTCGGGGAGGCGCCCCAGGAACCCGCAACCGA
CGAGGGCTACGCGGACCGTCCTTCTTCTCCCTCGCGCCGCCGTGGGCGAA
ACGACCGCGAAGAGCATCAGCAGCAGCAGCAGCGACAAGGTGGTAAAGGC
TGGTCTCCTCACGGAGACGAAGGAGACGGAAAAGTCGGCGACGCAGATGG
TGGTGGTGCCCGTGCCCGTGGCGGCGGCGGCGGCGGCTCAACAACAACAA
CAACAACAACAACAATCACCACCACCACGAGAACGACGAGTGCGAGGTGC
CAGGGACGCTGGCGTCTGCGCGGCGGAACCGAGCTGCAGCGACGGAACGC
GGGGCACCAGCAACAGCAGCAGCGGCTCATCCGCAGGGAGGACGAGGGGA
CACGGGTCGAAGCAGCAGGCAGACACGGACGAAGAGGGTCAGGGCTACGA
CGACGTGCCGGCAACGGAGGCGCAGCGCGACTCGGAGCTCCCGACTCAGT
TCCCCGGGGTCCGCGACGCTTTCGAGTCGGAGGTGCCGACCCAGTTCACG
GGAGCGCTAGGGGCGCATGATGCAGCGTTCAGCGGCAGCGACGATGATCG
TCGCGGTGACGGTGGCGGCAGCAGACGAGACGCGAGGAGGGTAGATAGGG
GGGCCCAACAACAACAACAACAACAACAACAATCACCACCACCACGAGAA
CGACGAGTGCGAGGTGCCAGGGACGCTGGCGTCTGCGCGGCGGAACCGAG
CTGCAGCGACGGAACGCGGGGCACCAGCAACAGCAGCAGCGGCTCATCCG
CAGGGAGGACGAGGGGACACGGGTCGAAGCAGCAGGCAGACACGGACGAA
GAGGGTCAGGGCTACGACGACGTGCCGGCAACGGAGGCGCAGCGCGACTC
GGAGCTCCCGACTCAGTTCCCCGGGGTCCGCGACGCTTTCGAGTCGGAGG
TGCCGACCCAGTTCACGGGAGCGCTAGGGGCGCATGATGCAGCGTTCAGC
GGCAGCGACGATGATCGTCGCGGTGACGGTGGCGGCAGCAGACGAGACGC
GAGGAGGGTAGATAGGGGGGCC
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