mRNA_H-canaliculatus_F_contig1039.403.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1039.403.1
Unique NamemRNA_H-canaliculatus_F_contig1039.403.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1039.403.1 vs. uniprot
Match: D8LM53_ECTSI (CMP/dCMP-type deaminase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM53_ECTSI)

HSP 1 Score: 318 bits (814), Expect = 7.290e-109
Identity = 154/176 (87.50%), Postives = 161/176 (91.48%), Query Frame = 1
Query:    1 IFREAVKKGNKVFGAAILKLSDLSLVAVGTNTEIECPLWHGEVACIKNFWDLPEEGRPLPSECLMLATHEPCPMCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRIFKEVFQCERATRENDFWKAYDLPKVVETLPEADALKEKVAGLRATYASLSELYQESKDRANTPRIPLS 528
            I  EAVKKGNKVFGAAILKLSDLSLV  GTNTEIECPLWHGEVACIKNFW+LPEEGRPLPSECLMLATHEPC MCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRI++EVF+CERATREN FWKAYDLPKVVETLPE  AL EKV  LR TYASLSELYQ+SK  A++ RIPLS
Sbjct:   26 ITTEAVKKGNKVFGAAILKLSDLSLVVAGTNTEIECPLWHGEVACIKNFWNLPEEGRPLPSECLMLATHEPCSMCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRIYQEVFKCERATRENKFWKAYDLPKVVETLPENGALGEKVTMLRETYASLSELYQDSKGGASSTRIPLS 201          
BLAST of mRNA_H-canaliculatus_F_contig1039.403.1 vs. uniprot
Match: A0A1H4JNY7_9HYPH (tRNA(Arg) A34 adenosine deaminase TadA n=10 Tax=Proteobacteria TaxID=1224 RepID=A0A1H4JNY7_9HYPH)

HSP 1 Score: 202 bits (515), Expect = 2.020e-63
Identity = 98/170 (57.65%), Postives = 123/170 (72.35%), Query Frame = 1
Query:   10 EAVKKGNKVFGAAILKLSDLSLVAVGTNTEIECPLWHGEVACIKNFWDLPEEGRPLPSECLMLATHEPCPMCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRIFKEVFQCERA--TRENDFWKAYDLPKVVETLPEADALKEKVAGLRATYASLSELYQESKDRANTP 513
            E V  GNK+FGAAILK SDLSLV   TN E+E PLWHGEV  +K F++LP+E RP  ++C+ L+THEPC +C+SAITW+ F   ++LFS EDSRDAF IPHDL+I KEVF  E      EN FWK+Y LP +   LPEA+ALK ++A L A YA+LS+ YQ+SK   + P
Sbjct:   26 EGVAHGNKLFGAAILKKSDLSLVLAETNNELENPLWHGEVHTLKRFYELPKEERPDTTDCIFLSTHEPCSLCLSAITWTGFDNFYYLFSHEDSRDAFAIPHDLKILKEVFTLEPGGYNAENAFWKSYALPALATALPEAEALKARIATLAAAYAALSQRYQDSKAENDIP 195          
BLAST of mRNA_H-canaliculatus_F_contig1039.403.1 vs. uniprot
Match: D2Z8Q5_9BACT (CMP/dCMP deaminase zinc-binding n=3 Tax=Synergistaceae TaxID=649777 RepID=D2Z8Q5_9BACT)

HSP 1 Score: 196 bits (499), Expect = 4.490e-61
Identity = 91/173 (52.60%), Postives = 126/173 (72.83%), Query Frame = 1
Query:    7 REAVKKGNKVFGAAILKLSDLSLVAVGTNTEIECPLWHGEVACIKNFWDLPEEGRPLPSECLMLATHEPCPMCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRIFKEVFQCERATRENDFWKAYDLPKVVETLPEADALKEKVAGLRATYASLSELYQESKDRANTPRIPL 525
            R+ V++G+KVFGAAILK  DLSLV  GTN E+ECPLWHGEV  IK F+++    RP P +C+ L+THEPC MC+SAI W+ F E +FLFS +D+++AF+IPHD+++ KEVF+C+  TREN F++A+ L  +V  L + D  KE+++ ++  Y S+S LYQ  KD   T  IPL
Sbjct:   23 RKGVEEGHKVFGAAILKKDDLSLVVAGTNHELECPLWHGEVYTIKKFYEM--SNRPDPKDCVFLSTHEPCSMCLSAIAWAGFPEFYFLFSYDDTKNAFSIPHDIKMLKEVFECDAPTRENSFYRAHPLMDMVPDLDDPDDAKERISRIQCEYDSMSSLYQSRKD---TNSIPL 190          
BLAST of mRNA_H-canaliculatus_F_contig1039.403.1 vs. uniprot
Match: K2N1Z2_9HYPH (Zinc-binding CMP/dCMP deaminase n=1 Tax=Nitratireductor pacificus pht-3B TaxID=391937 RepID=K2N1Z2_9HYPH)

HSP 1 Score: 194 bits (492), Expect = 6.680e-60
Identity = 92/170 (54.12%), Postives = 119/170 (70.00%), Query Frame = 1
Query:   16 VKKGNKVFGAAILKLSDLSLVAVGTNTEIECPLWHGEVACIKNFWDLPEEGRPLPSECLMLATHEPCPMCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRIFKEVFQCERA--TRENDFWKAYDLPKVVETLPEADAL--KEKVAGLRATYASLSELYQESKDRANTP 513
            V++GNK+FGAAIL+ SDLSLV   TN E+E PLWHGE+  +K F++LP+  RP   +C+ L+THEPC +C+SAITW+ F   H+LFS EDSRD+F IPHDLRI KEVF  +      EN FWK+Y LP +   LPEADAL    ++A L+A Y  LS +YQ+ K   + P
Sbjct:   28 VERGNKLFGAAILRKSDLSLVIAETNNELENPLWHGEMHALKRFYELPQASRPDTKDCIFLSTHEPCSLCLSAITWTGFDNFHYLFSHEDSRDSFAIPHDLRILKEVFTLDAGGYNAENAFWKSYSLPALAAALPEADALAASARIAALKAAYDGLSGIYQQGKAENSIP 197          
BLAST of mRNA_H-canaliculatus_F_contig1039.403.1 vs. uniprot
Match: K2PN27_9HYPH (Zinc-binding CMP/dCMP deaminase n=1 Tax=Nitratireductor indicus C115 TaxID=1231190 RepID=K2PN27_9HYPH)

HSP 1 Score: 192 bits (488), Expect = 2.540e-59
Identity = 93/173 (53.76%), Postives = 119/173 (68.79%), Query Frame = 1
Query:    7 REAVKKGNKVFGAAILKLSDLSLVAVGTNTEIECPLWHGEVACIKNFWDLPEEGRPLPSECLMLATHEPCPMCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRIFKEVFQCERA--TRENDFWKAYDLPKVVETLPEADA--LKEKVAGLRATYASLSELYQESKDRANTP 513
            RE V  GNK+FGAAIL+  DLSLV   TN E+E PLWHGEV  +K F+++P+  RP  S+C+ L+THEPC +C+SAITW+ F   H+LFS EDSRD+F IPHDL+I KEVF  E      EN FWK+Y +P +  TLPEA+A     ++  + A YA LS+ YQESK   + P
Sbjct:   23 REGVAHGNKLFGAAILRRDDLSLVLAETNNELENPLWHGEVHALKRFYEMPKTSRPDTSDCIFLSTHEPCSLCLSAITWTGFDNFHYLFSHEDSRDSFAIPHDLKILKEVFTLEPGGYNAENAFWKSYAIPALARTLPEAEARVALARIEAIGAAYAELSDAYQESKAGNDIP 195          
BLAST of mRNA_H-canaliculatus_F_contig1039.403.1 vs. uniprot
Match: A0A256FSF7_9HYPH (Cytidine and deoxycytidylate deaminase zinc-binding region family protein n=14 Tax=Brucella/Ochrobactrum group TaxID=2826938 RepID=A0A256FSF7_9HYPH)

HSP 1 Score: 191 bits (484), Expect = 8.770e-59
Identity = 96/177 (54.24%), Postives = 124/177 (70.06%), Query Frame = 1
Query:   10 EAVKKGNKVFGAAILKLSDLSLVAVGTNTEIECPLWHGEVACIKNFWDLPEEGRPLPSECLMLATHEPCPMCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRIFKEVFQCERA--TRENDFWKAYDLPKVVETLPEADA--LKEKVAGLRATYASLSELYQESKDRANTPRIPLS 528
            + V +GNKVFGAA+L+ SDLSLV   TN E E PLWHGEV  +K F+++PE+GRP     + L+THEPC MC+SAITWS F   ++LFS EDSRDAF+IPHDL+I KEVF  E     R+N FW ++ +PK+V +LPE D   L+ ++  +RA Y ++S  YQ SKD  N   IPLS
Sbjct:   19 QGVAEGNKVFGAALLRKSDLSLVLAETNNETENPLWHGEVHTLKRFYEMPEQGRPDTKNMVFLSTHEPCSMCLSAITWSGFDNFYYLFSHEDSRDAFSIPHDLKILKEVFTLEPGGYNRDNSFWHSHSIPKMVASLPEPDRARLENRLEAIRAKYDAMSGTYQSSKD-GNA--IPLS 192          
BLAST of mRNA_H-canaliculatus_F_contig1039.403.1 vs. uniprot
Match: A0A1X7L9P3_9BACT (tRNA(Arg) A34 adenosine deaminase TadA n=1 Tax=Dethiosulfovibrio salsuginis TaxID=561720 RepID=A0A1X7L9P3_9BACT)

HSP 1 Score: 189 bits (480), Expect = 3.440e-58
Identity = 86/171 (50.29%), Postives = 122/171 (71.35%), Query Frame = 1
Query:    1 IFREAVKKGNKVFGAAILKLSDLSLVAVGTNTEIECPLWHGEVACIKNFWDLPEEGRPLPSECLMLATHEPCPMCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRIFKEVFQCERATRENDFWKAYDLPKVVETLPEADALKEKVAGLRATYASLSELYQESKDRANTP 513
            I R+ V  G+KVFGAA+L   DLSLV  GTN E+ECPLWHGEV  IK F+ +  E RP P++C+ L+THEPC MC+S+I W+ F E +FLFS ED++D+F+IPHD+++ KEVF C+  +REN F+KA+ L +++ +L + +  KE++A ++  Y  LS  YQ  KD  + P
Sbjct:   21 ITRQGVADGHKVFGAAVLLKKDLSLVLAGTNHELECPLWHGEVYTIKEFYRM--ENRPDPADCVFLSTHEPCSMCLSSIAWAGFPEFYFLFSYEDTKDSFSIPHDIKMIKEVFLCDAPSRENSFYKAHPLVEMIPSLSDPEGAKERIAKIQDEYDELSRTYQARKDDNSIP 189          
BLAST of mRNA_H-canaliculatus_F_contig1039.403.1 vs. uniprot
Match: A0A7V6ZKW7_9HYPH (Nucleoside deaminase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A7V6ZKW7_9HYPH)

HSP 1 Score: 188 bits (477), Expect = 1.180e-57
Identity = 91/172 (52.91%), Postives = 120/172 (69.77%), Query Frame = 1
Query:   10 EAVKKGNKVFGAAILKLSDLSLVAVGTNTEIECPLWHGEVACIKNFWDLPEEGRPLPSECLMLATHEPCPMCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRIFKEVFQCERA--TRENDFWKAYDLPKVVETLPEADA--LKEKVAGLRATYASLSELYQESKDRANTP 513
            E V +GNK+FGAAIL+ SDLS+V   +N E E PLWHGEV  +K F++LP+  RP P +CL LATHEPC +C+SAITW+ +   +FLFS EDSRD+F IPHDLRI KEVF+ +      EN +WK+Y + KV+ TLP+A+   L+ + A +   Y  LS +YQ SKD  + P
Sbjct:   24 EGVARGNKLFGAAILRKSDLSVVVAESNNETENPLWHGEVHALKRFYELPKADRPDPKDCLFLATHEPCSLCLSAITWTGYDNFYFLFSHEDSRDSFAIPHDLRILKEVFRLDPGGYAAENAYWKSYSIRKVMRTLPDAEQARLEARRAAIARRYDELSSVYQASKDDNDIP 195          
BLAST of mRNA_H-canaliculatus_F_contig1039.403.1 vs. uniprot
Match: A0A429YZW9_9HYPH (Nucleoside deaminase n=2 Tax=Aquibium TaxID=2911176 RepID=A0A429YZW9_9HYPH)

HSP 1 Score: 188 bits (477), Expect = 1.180e-57
Identity = 89/173 (51.45%), Postives = 119/173 (68.79%), Query Frame = 1
Query:    7 REAVKKGNKVFGAAILKLSDLSLVAVGTNTEIECPLWHGEVACIKNFWDLPEEGRPLPSECLMLATHEPCPMCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRIFKEVFQCERA--TRENDFWKAYDLPKVVETLPEADA--LKEKVAGLRATYASLSELYQESKDRANTP 513
            R  V+KGNK+FGAAIL  +D SLV   TN E+E PLWHGEV  +K F++LP+E RP   +C+ +ATHEPC +C+SAITW+ F   ++LFS EDSRDAF IPHDL+I K VF  E      EN+FWK+Y + K+   LP+AD   ++ ++A +  TY  LS +YQ+ KD  + P
Sbjct:   23 RAGVEKGNKLFGAAILNKADGSLVLAETNNELENPLWHGEVHALKRFYELPKEKRPPTGDCIFIATHEPCSLCLSAITWTGFDNFYYLFSHEDSRDAFAIPHDLKILKAVFTLEPGGYAAENEFWKSYSIRKLAAALPDADRARIEARIAAIAKTYDELSAIYQDGKDANDIP 195          
BLAST of mRNA_H-canaliculatus_F_contig1039.403.1 vs. uniprot
Match: UPI001654C603 (nucleoside deaminase n=2 Tax=Brucella/Ochrobactrum group TaxID=2826938 RepID=UPI001654C603)

HSP 1 Score: 187 bits (476), Expect = 1.790e-57
Identity = 95/177 (53.67%), Postives = 122/177 (68.93%), Query Frame = 1
Query:   10 EAVKKGNKVFGAAILKLSDLSLVAVGTNTEIECPLWHGEVACIKNFWDLPEEGRPLPSECLMLATHEPCPMCVSAITWSAFKEIHFLFSMEDSRDAFNIPHDLRIFKEVFQCERA--TRENDFWKAYDLPKVVETLPEADA--LKEKVAGLRATYASLSELYQESKDRANTPRIPLS 528
            + V +GNKVFGAA+L  SDLSLV   TN E E PLWHGEV  +K F+++PE+GRP   E + L+THEPC MC+SAITWS F   ++LFS EDSRDAF+IPHDL+I KEVF  E     R N FW ++ +P +V +LPE D   L++++  +R  Y ++S  YQ SKD  N   IPLS
Sbjct:   26 QGVAEGNKVFGAALLNKSDLSLVLAETNNETENPLWHGEVHTLKRFYEMPEQGRPNTKEMVFLSTHEPCSMCLSAITWSGFDNFYYLFSHEDSRDAFSIPHDLKILKEVFTLEPGGYNRNNSFWHSHSIPNMVASLPEPDRSRLEKRLDAIRKKYDAMSGTYQSSKD-GNA--IPLS 199          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1039.403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM53_ECTSI7.290e-10987.50CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A1H4JNY7_9HYPH2.020e-6357.65tRNA(Arg) A34 adenosine deaminase TadA n=10 Tax=Pr... [more]
D2Z8Q5_9BACT4.490e-6152.60CMP/dCMP deaminase zinc-binding n=3 Tax=Synergista... [more]
K2N1Z2_9HYPH6.680e-6054.12Zinc-binding CMP/dCMP deaminase n=1 Tax=Nitratired... [more]
K2PN27_9HYPH2.540e-5953.76Zinc-binding CMP/dCMP deaminase n=1 Tax=Nitratired... [more]
A0A256FSF7_9HYPH8.770e-5954.24Cytidine and deoxycytidylate deaminase zinc-bindin... [more]
A0A1X7L9P3_9BACT3.440e-5850.29tRNA(Arg) A34 adenosine deaminase TadA n=1 Tax=Det... [more]
A0A7V6ZKW7_9HYPH1.180e-5752.91Nucleoside deaminase n=2 Tax=Hyphomicrobiales TaxI... [more]
A0A429YZW9_9HYPH1.180e-5751.45Nucleoside deaminase n=2 Tax=Aquibium TaxID=291117... [more]
UPI001654C6031.790e-5753.67nucleoside deaminase n=2 Tax=Brucella/Ochrobactrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1039contigH-canaliculatus_F_contig1039:22272..24847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score319.3
Seed ortholog evalue1.1e-84
Seed eggNOG ortholog2880.D8LM53
EggNOG free text desc.Cytidine and deoxycytidylate deaminase zinc-binding region
EggNOG OGs2S00E@2759,COG0590@1
COG Functional cat.FJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCMP/dCMP deaminase, zinc-binding
Ec32 orthologEc-06_002510.1
Exons4
Model size531
Cds size531
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1039.403.1prot_H-canaliculatus_F_contig1039.403.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1039 22272..24847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928680.235045-CDS-H-canaliculatus_F_contig1039:22271..224061622928680.235045-CDS-H-canaliculatus_F_contig1039:22271..22406Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1039 22272..22406 -
1696845523.8802118-CDS-H-canaliculatus_F_contig1039:22271..224061696845523.8802118-CDS-H-canaliculatus_F_contig1039:22271..22406Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1039 22272..22406 -
1622928680.25162-CDS-H-canaliculatus_F_contig1039:22839..229801622928680.25162-CDS-H-canaliculatus_F_contig1039:22839..22980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1039 22840..22980 -
1696845523.8970816-CDS-H-canaliculatus_F_contig1039:22839..229801696845523.8970816-CDS-H-canaliculatus_F_contig1039:22839..22980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1039 22840..22980 -
1622928680.264199-CDS-H-canaliculatus_F_contig1039:23484..236131622928680.264199-CDS-H-canaliculatus_F_contig1039:23484..23613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1039 23485..23613 -
1696845523.9080882-CDS-H-canaliculatus_F_contig1039:23484..236131696845523.9080882-CDS-H-canaliculatus_F_contig1039:23484..23613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1039 23485..23613 -
1622928680.2783568-CDS-H-canaliculatus_F_contig1039:24721..248471622928680.2783568-CDS-H-canaliculatus_F_contig1039:24721..24847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1039 24722..24847 -
1696845523.9217024-CDS-H-canaliculatus_F_contig1039:24721..248471696845523.9217024-CDS-H-canaliculatus_F_contig1039:24721..24847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1039 24722..24847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1039.403.1

>prot_H-canaliculatus_F_contig1039.403.1 ID=prot_H-canaliculatus_F_contig1039.403.1|Name=mRNA_H-canaliculatus_F_contig1039.403.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=177bp
IFREAVKKGNKVFGAAILKLSDLSLVAVGTNTEIECPLWHGEVACIKNFW
DLPEEGRPLPSECLMLATHEPCPMCVSAITWSAFKEIHFLFSMEDSRDAF
NIPHDLRIFKEVFQCERATRENDFWKAYDLPKVVETLPEADALKEKVAGL
RATYASLSELYQESKDRANTPRIPLS*
back to top

mRNA from alignment at H-canaliculatus_F_contig1039:22272..24847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1039.403.1 ID=mRNA_H-canaliculatus_F_contig1039.403.1|Name=mRNA_H-canaliculatus_F_contig1039.403.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1039:22272..24847- (Hapterophycus canaliculatus Oshoro5f female)
ATCTTCAGGGAGGCCGTGAAGAAGGGAAACAAGGTTTTCGGCGCTGCCAT CCTCAAACTGTCGGACCTGAGTCTGGTCGCGGTGGGCACGAACACTGAAA TTGAGTGCCCTCTCTGGCATGGCGAGGTGAGGGAGAAGGGAAGCGCAGGT AGACACAAGGGCAAGGGGCGCTAGACAGCAAAACATGCACGAACAAAGGG AAGCAGAGGCAGGTCGACCGACAAACAGCGCGATACGGAAGTACATGCAG ACCGACACGCGCAGAGGCAGAGATTGAGACACACGGAGGGGATAGAGATG GGAGCAGGAAGAAAGACGAGCACTCTGCCAGGCAGAGTCAGTCGCTATCT CCGTCAGCCGAGAGTAAGACTCCTTCCTGCGTTTGTCCAGGAAGGCGCTT CGAGTAAAGGAATCAGCAGGAACAGCATTTACCGCTTCAGCCAGCCAGTG GGTCGCTAGTCGCTCTTGCCGTTATTGTCGCCATTGCTTTTGATTCGTTT CGGGTATGCCTTTTTGGCCTAGCCCTCCTCCCCTTTGACCCCTTCCGGTC GTTAAAGCGGAGGGCCTGCGGCAGGAGGATACCATGAGATAGGTCAGTCG TGATAAACGGACAGTGAGTCACAGCCATGCCGGGAGATCGCAACACTCCT CTGTATCTTGGAGTGCAAGAGATGTGGCTGTGGTTGGAAGAAGAGCACTG GTCCTATTTCTGTAAGCGCATGTGTGATCGATGGTCCCAAGACGAAGGCA ATACACTGAGAACGAGTATTTACCGCCGCTTTGCTCTCCTGTTTTTCGTG ACACACTGATGAGGCGGCTACAGGGTAAAGCCCATGCCTGAAGCAGTATA AGAAGAAGAAAAAAGTGAAACGTTCTAGAGGCCAAACGCAGCAAGTATAC GGTGCAGCCCAAATTTCGAGCGGCACGCCGCAAATACCACAGCGCTTCGC GCTTGGTGATGTGTGAGCCTTGCTCGGCGAAAACGCGGCAAGCTCTGTGC TGGCTTCGCGAATGTAAGGTTTTACGTTCCTTTGACTACCGGGTGTGTGA CGATGAGCCCCCCCCTCCTTCTCTCGCTGGCCGTTAGGGATTATACCAGC GCCGGGGGCACAACGCACGTTTCGACCGCACGTGAACATGTGCAGACGCA TCTTGCGTATCCTGACCCACACGCCTTGGCAAGTGGTGGCTAGCGCCCGC TTTGATCTTCTTCATAACACGCTGGTTGCCTCAGGTGGCGTGCATCAAGA ATTTTTGGGACCTGCCTGAGGAAGGGAGGCCTCTTCCGTCAGAGTGCCTC ATGCTGGCTACCCACGAGCCGTGCCCGATGTGCGTAAGCGCCATCACTTG GTCGGCCTTCAAGGTAAGCCTGGCTACTAGGCACGGCGGTTTGGTGATCA CAAGTCGTCCGCGGGACGCGAGTCACCCTTAGGAAAGTGGACGATGAGAA TGACGTGTATCTTGGTTTCTTGCCGCCTGCGCGTGCTCGTGCCTTCAGGA GTCTTATCCTTAGCAGATGGCGTGATGTGTCATGGGTTACCCTAGAGAGT CCACGATGGGAAAAGGTAGCTACTGCTGAGGTTACCGCATGGAAGCCCAC TTTTTCCCTTCTTTTTCTCCGACCGGCCTTTGAAAGTTTAAAGCCCCAAC AGAGATCGGTACCCCGCTTGGAAATGGAGCCCATCCGCCTCGTAGAGCAA AAATGCGATCACACACTTGAGGCAGTGATGACGGGCCTACCTCGAAGAAA ATAAAAACTAAGTGCTGCGGCGACACTTTGTCACCGCCGCCACTGTTCGC AAGTTCGTGAAACATGTTGTGGTGGTCTCTCGTGATCTTGCTTCTTGTTG TTTTACTCCCCGACCAGGAAATCCACTTTCTGTTCTCGATGGAGGACTCA CGGGACGCCTTCAACATACCGCACGACCTCCGAATCTTCAAGGAGGTGTT CCAATGCGAGCGGGCGACGAGGGAAAACGACTTCTGGAAGGCGTACGATC TGCCCAAGGTGTTCAATTCCGCTGCGTAGGCGTCGCCTGGTGTCTTGACT ACGCCATCGCCTCAGCTCCGCCGTCTCTTGACGGGCCCCATACCCCAGAA AACCCGGAAGTAATGCTTGGACGTAGGTGAAAACGGTTGGTTTTTACTAT CAGTCGTTCTTGGTTACATCACCGAACGCGATGAAACACCGCGCGATGAC CACTACTGTGAACTCCTGAAGAGGAAATAAAACCCTGAACGTGCACCATC ACTCCAACACACGATGTCAGAGACATGTTTTTTGAGCGGCCTTCGTTGCA CTCACGGTTTCCGCAGTCTCACCGTCGCCCCCCGCGTGTTACTGCTACAA CTCTACCTCATGGCTGCAATTCTCGTCGACTTCTCGCCGACAATTTTGCC GCGGGGAACCAACGACTGGGTGGCTGGATGGGTCCAACCAGGTCGTGGAA ACCCTTCCGGAGGCGGACGCCCTGAAAGAAAAGGTGGCCGGGCTGCGGGC GACCTACGCCTCGCTGTCTGAGCTGTACCAGGAGTCTAAGGACCGCGCGA ACACCCCGCGTATTCCCCTCTCCTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1039:22272..24847-

>mRNA_H-canaliculatus_F_contig1039.403.1 ID=mRNA_H-canaliculatus_F_contig1039.403.1|Name=mRNA_H-canaliculatus_F_contig1039.403.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1062bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1039:22272..24847- (Hapterophycus canaliculatus Oshoro5f female)
ATCTTCAGGGAGGCCGTGAAGAAGGGAAACAAGGTTTTCGGCGCTGCCAT
CCTCAAACTGTCGGACCTGAGTCTGGTCGCGGTGGGCACGAACACTGAAA
TTGAGTGCCCTCTCTGGCATGGCGAGATCTTCAGGGAGGCCGTGAAGAAG
GGAAACAAGGTTTTCGGCGCTGCCATCCTCAAACTGTCGGACCTGAGTCT
GGTCGCGGTGGGCACGAACACTGAAATTGAGTGCCCTCTCTGGCATGGCG
AGGTGGCGTGCATCAAGAATTTTTGGGACCTGCCTGAGGAAGGGAGGCCT
CTTCCGTCAGAGTGCCTCATGCTGGCTACCCACGAGCCGTGCCCGATGTG
CGTAAGCGCCATCACTTGGTCGGCCTTCAAGGTGGCGTGCATCAAGAATT
TTTGGGACCTGCCTGAGGAAGGGAGGCCTCTTCCGTCAGAGTGCCTCATG
CTGGCTACCCACGAGCCGTGCCCGATGTGCGTAAGCGCCATCACTTGGTC
GGCCTTCAAGGAAATCCACTTTCTGTTCTCGATGGAGGACTCACGGGACG
CCTTCAACATACCGCACGACCTCCGAATCTTCAAGGAGGTGTTCCAATGC
GAGCGGGCGACGAGGGAAAACGACTTCTGGAAGGCGTACGATCTGCCCAA
GGAAATCCACTTTCTGTTCTCGATGGAGGACTCACGGGACGCCTTCAACA
TACCGCACGACCTCCGAATCTTCAAGGAGGTGTTCCAATGCGAGCGGGCG
ACGAGGGAAAACGACTTCTGGAAGGCGTACGATCTGCCCAAGGTCGTGGA
AACCCTTCCGGAGGCGGACGCCCTGAAAGAAAAGGTGGCCGGGCTGCGGG
CGACCTACGCCTCGCTGTCTGAGCTGTACCAGGAGTCTAAGGACCGCGCG
AACACCCCGCGTATTCCCCTCTCCTAGGTCGTGGAAACCCTTCCGGAGGC
GGACGCCCTGAAAGAAAAGGTGGCCGGGCTGCGGGCGACCTACGCCTCGC
TGTCTGAGCTGTACCAGGAGTCTAAGGACCGCGCGAACACCCCGCGTATT
CCCCTCTCCTAG
back to top