mRNA_H-canaliculatus_F_contig1038.393.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1038.393.1
Unique NamemRNA_H-canaliculatus_F_contig1038.393.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1038.393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1038contigH-canaliculatus_F_contig1038:12116..12481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1038.393.1prot_H-canaliculatus_F_contig1038.393.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1038 12141..12455 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928678.8385339-UTR-H-canaliculatus_F_contig1038:12115..121401622928678.8385339-UTR-H-canaliculatus_F_contig1038:12115..12140Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1038 12116..12140 +
1696845523.1939754-UTR-H-canaliculatus_F_contig1038:12115..121401696845523.1939754-UTR-H-canaliculatus_F_contig1038:12115..12140Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1038 12116..12140 +
1622928678.8622067-UTR-H-canaliculatus_F_contig1038:12455..124811622928678.8622067-UTR-H-canaliculatus_F_contig1038:12455..12481Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1038 12456..12481 +
1696845523.2182345-UTR-H-canaliculatus_F_contig1038:12455..124811696845523.2182345-UTR-H-canaliculatus_F_contig1038:12455..12481Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1038 12456..12481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928678.853139-CDS-H-canaliculatus_F_contig1038:12140..124551622928678.853139-CDS-H-canaliculatus_F_contig1038:12140..12455Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1038 12141..12455 +
1696845523.2037122-CDS-H-canaliculatus_F_contig1038:12140..124551696845523.2037122-CDS-H-canaliculatus_F_contig1038:12140..12455Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1038 12141..12455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1038.393.1

>prot_H-canaliculatus_F_contig1038.393.1 ID=prot_H-canaliculatus_F_contig1038.393.1|Name=mRNA_H-canaliculatus_F_contig1038.393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=105bp
MVISSIFHFLRVQSMCRRKILWQGTNPVLEGNGLHRFLPQGIEVDNTWSR
TRLLPAHNDEQSISRRFKERSDFSEWWRSAENRVWRSIATNGTLLRSHLR
AGIG*
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mRNA from alignment at H-canaliculatus_F_contig1038:12116..12481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1038.393.1 ID=mRNA_H-canaliculatus_F_contig1038.393.1|Name=mRNA_H-canaliculatus_F_contig1038.393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1038:12116..12481+ (Hapterophycus canaliculatus Oshoro5f female)
CGAGTCAACGTGCTGCACACCGACCATGGTGATCTCTTCCATCTTTCACT
TTTTGCGTGTCCAGAGCATGTGCCGTCGAAAGATACTCTGGCAGGGGACA
AATCCGGTCCTAGAAGGAAATGGTTTACATCGGTTCTTACCTCAGGGAAT
CGAGGTTGATAACACATGGTCTCGTACTCGACTTCTGCCTGCCCACAATG
ACGAACAGAGTATCTCGAGAAGGTTCAAAGAGCGCAGTGATTTTAGCGAG
TGGTGGCGCTCAGCTGAAAATAGAGTATGGCGTTCGATCGCAACAAATGG
CACCTTGCTTCGCTCTCACCTCCGAGCCGGTATCGGCTGATGATACGCCC
CAGACCGTAGCGGCGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1038:12116..12481+

>mRNA_H-canaliculatus_F_contig1038.393.1 ID=mRNA_H-canaliculatus_F_contig1038.393.1|Name=mRNA_H-canaliculatus_F_contig1038.393.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1038:12116..12481+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGATCTCTTCCATCTTTCACTTTTTGCGTGTCCAGAGCATGTGCCG
TCGAAAGATACTCTGGCAGGGGACAAATCCGGTCCTAGAAGGAAATGGTT
TACATCGGTTCTTACCTCAGGGAATCGAGGTTGATAACACATGGTCTCGT
ACTCGACTTCTGCCTGCCCACAATGACGAACAGAGTATCTCGAGAAGGTT
CAAAGAGCGCAGTGATTTTAGCGAGTGGTGGCGCTCAGCTGAAAATAGAG
TATGGCGTTCGATCGCAACAAATGGCACCTTGCTTCGCTCTCACCTCCGA
GCCGGTATCGGCTGAATGGTGATCTCTTCCATCTTTCACTTTTTGCGTGT
CCAGAGCATGTGCCGTCGAAAGATACTCTGGCAGGGGACAAATCCGGTCC
TAGAAGGAAATGGTTTACATCGGTTCTTACCTCAGGGAATCGAGGTTGAT
AACACATGGTCTCGTACTCGACTTCTGCCTGCCCACAATGACGAACAGAG
TATCTCGAGAAGGTTCAAAGAGCGCAGTGATTTTAGCGAGTGGTGGCGCT
CAGCTGAAAATAGAGTATGGCGTTCGATCGCAACAAATGGCACCTTGCTT
CGCTCTCACCTCCGAGCCGGTATCGGCTGA
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