mRNA_H-canaliculatus_F_contig1038.392.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1038.392.1 vs. uniprot
Match: D8LDL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL5_ECTSI) HSP 1 Score: 594 bits (1531), Expect = 4.510e-178 Identity = 625/1770 (35.31%), Postives = 796/1770 (44.97%), Query Frame = 1
Query: 1 DMKGVPSLCALSVADVVVAEYEKLLAAIPTMAKHMGKLQSDTEAMAEGLEKRVRSLVDGYRELNELVEQAPSRLNDAALEYANTLDVP-PQGSKSAFSGDVIN--EHSPDIEGIHRELFALREAKLAIDGVVMSTAVD---LQDPIAAHRTKSSSGRRKVVGGALGGTGLSKRTATTRAVEGRTEQAHRVSASSVTAAVRGSGRGGRAVDMAASRAMAGGAGTKRSSVRRVLAEVQLDPDLPLPLPTFPGNGNVNTLEGVVKWQQQLHQVGSHGQHSNFTQPLRTNSLPGDLKHKGTNV------KLAEVHRHGYFVPGVVAPRQRQSHGLPQELRAISTVPTPEKRPAKATSSSGKRRRLHSR-----SSAASIKRGTTSALPLGPQAPAITSEARRVVL-------SSARPDPGSAAAMALSREQRRYTSQAVDELRKEMREREDRLERELDRRIRSRSPRVGKGAPAAFGGASSREPPKVVAKAGAAGGRSGAASAT---------------RGRGPKGRRRLLRDLASQRKPAATYRVPVNEENDRRTKDSNSSQTANKPA----EAVDVQAQTANARVHVFLHSEPIIGDVLGTAADKRQPVPKDIPASGSHDQAQQTGRGVDRDGGHCLDDASLTSSSVSGGDV---GLSSWRRGGLRESPPPPVVFIEGEGRNTVWRPSDDXXXXXXXXXXNSLRNGGITNGAGAEVLREAIDGGDSRLIHISPAEEKKEEGSDPKPGA-VTVTTGRAGLAASMSQQLAAAVQDDVWVELAGMLSLSASEPTTA-GLSNTSAPIEPASTREAVRPLPETPMVSPELLDLMREVVGQQRDMGEERSALMQALRAEVESRRLLLANXXXXXXXXXXXXXXXESEPLTTSMTSRLAAXXXXXXXXXXAEQYRQRQEKGGQGTITIDGVEEGKFTARPPREERFWPGTSDQEAG--LAESDSEWSREGLRAVTGDGQNGIVKEAAVILQEKQDSDRCGEASG----QQPSHPFRSNLGRVLAAGSGWRDVPLDEIR--APRKVFSTSLGRLLAVVPSRSCRE---LWYVGSKKAYARSIDNSKNVALLYALQEFLCEAERQASAGADTGVSSPQTAVRKRASALESRRFSKAMAEVESKWPVRGEREDGGIGSPCDS--GESEYSASEESTRIQTAPREGFSSPFPTLVKKDAPPDATQQPQQQPQLQDSG---RLNLSLATAVLSVAQRLSXXXXXXXXXXXXXXXXXRQALEDTRQEGKEARERQSQLIFRLKEMELGSERRAKVFAGDIAKLREEGRFERQGIDQPSTQVRAQAPATPRHSSLSRGVDSSNTSESGSSLDALCLAAAPLRSGAYHQPIPARSESRSSMSEGQLRGYFSDGELLNSTPRSNSRYTLEDGELPPSPLRSPLPVRGGEESVIDAAGSVAGRDCDTRGD--PRKHLALLMSAHPHLE--ANRPSMRGLQKNAHAHDHHP-----SGGRGGGTGDLRQGTPAGMGLHGSGIWRLRPPEPTTKPNCPREVSVADDRVDDA---DNGS-SLSDSGQSVEPGQVRTRVLRSWQESEVLTSDRGGGMCDRRAGGGQIELGSSWRRKHQAASEDSTPS--AGEASSGVEMGETLATFLDDSIDRLSTDVGEIEERRGGMGARNTRPLVALHVGAGSTSDGQR--AEIQRAIAEAELDLRTVAAQDCRLNGPVSESV-------QDDRKAADWKKTAG----GRKHDG----IGGTGDLFGDVTKEAAPAEGAGSRERLEPGEVP 5022
++ G+P L +L+VAD VV EYEKLLAA+PTMA+HMGKLQ DTE MAEGLE+RVRSLVDGYRELNELV+QAP R++DAA EYA L + QGS G ++ + + D+EGIHRELFAL+EAK+A+D +M D Q A S+S R + G G+S+R+ T G E+++R + + A G T+R S RR L E+Q+DPD PLPLPTFPG+G + L G K Q NSLPGDLKH G+ + E H HGYFVPGVVAP+QRQSHGLP+ELRAIST+PTPEKRPA ++S + S +R +A+P+ P P +E S++RPDPGS+AA+A +R+QRR T +AVD LRKEM ERE RLE LDR A G R G+ +A A R V EE + D ++P + D QAQTA V +FLH +P I + L A+ QP P+ A G+H Q + TG V+ + LDDAS SS GG+ GL G L SPP PVVF+EGEGRN WRP+DD +S G T+ GA EA+ GD+RLI + KE+ D +P + +TTGR AA + VQD WVELAGML++SA+ PT +S T + +A + E SPELLDLMREVVGQQR+MGEER R+E+G G+ G E + RP +RFWP TS+ +A ES S + EG GQ + + + + GEA G Q P FRSNLGR+LAAGSGW+DVPL+E A KVF TSL LA P + + + VG S + A +QE L EA R+ DTG SP+TAVRKRASALESRRF A++E E+K E DGG+ SP G QD RL+LSLATAVLSVAQRLS RQA+E+TR+EG + R+RQS+++ RL+EME GSE+RA+V A +IA+LREEGR ERQ I Q Q RG R GE + + AGRD + G PR HL LLMSAHP L+ NR S RG A H SGG G G R+ +G G R +P P + + + D GS SLSDSGQS+EPGQ R+ SW + RG G+ A GG G+SW R H + + + T S AGEASSG EMGE ++ +D G +EE G R++RP+VAL VG G+R EIQRA+AEAELDL T D + S + +++ A+ TA G+ D +G + F K++ AE R+ LEPGEVP
Sbjct: 83 EVVGLPGLSSLNVADAVVTEYEKLLAAVPTMARHMGKLQLDTEVMAEGLERRVRSLVDGYRELNELVDQAPVRVSDAASEYAQALGLRRTQGSPLLGDGAGMDGSDEALDVEGIHRELFALKEAKIALDAAIMLAPTDPTQRQQRRGALDRHSTSSARVANRASRGVQGVSRRSGITAVAGGGGERSYRRTVAXXXXXXXXXXXXXXXXXXXXXXXXAAGGVTRRPSDRRALVEMQVDPDRPLPLPTFPGHGKL--LGGEAKHXXXXXXXX---------QAPSGNSLPGDLKHPGSGGGGGEADQPGEGHYHGYFVPGVVAPKQRQSHGLPRELRAISTIPTPEKRPASRATASXXXXXXXXXXXXXLAQPPSARRA--AAVPVAPPLPRQPAEXXXXXXXXXXXXXSASRPDPGSSAALASARDQRRSTRRAVDALRKEMLEREARLEXXLDRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGKRRGSTAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSRDSVGEEAEGADNDDEEGGRGSRPVARSVDTADAQAQTAADGVQLFLHPQPAIREALRVPAN--QPSPEGH-AVGAHQQTRSTGNVVEEH--YYLDDASFLSSVSGGGEEDGSGLGRQLGGRLHVSPPGPVVFVEGEGRNRYWRPADDDRLLRGEGG-SSAAAFGATSATGASGA-EALHSGDARLILAA-----KEDNDDGRPEREIRLTTGRLEAAAVAPES----VQDGAWVELAGMLAMSAAPPTARPSISETL-----SGEGQAGKSSTEAAAASPELLDLMREVVGQQREMGEER------------------------------------------------------------------REEEGKSGSAD-GGQGEQQLVDRPTPTDRFWPITSEHDAAELAEESGSGTNGEGXXXXV-QGQGVAAAKVVAVRDDGGTEEEKGEAGGVSAQQPPPQTFRSNLGRLLAAGSGWKDVPLEEDGDGAAEKVFKTSLXXXLAGGPGGALKGEAGVLGVGGGANSGSSRTGTSRAAGEPDVQELLWEAGRRG----DTGALSPETAVRKRASALESRRFLSAVSESEAKRCA--EERDGGLSSPGSDVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDGQGGERLHLSLATAVLSVAQRLSAVEERALARAEGAEGLARQAMEETRKEGADGRQRQSEVMHRLEEMEHGSEKRARVVAREIAELREEGRLERQRISQLQ----------------------------------------------------------------QTRGN-----------------------------------RSGEAEALGVSN--AGRDWSSGGGGGPRPHLTLLMSAHPRLKRGGNRGSSRGGHVKAPLHAQTDDGKGCSGGVAGSGGGGRRRGSRSLGGPFPGTVRENGDGGLRRPGFPEQSAGLGVEIGGGVGGDAGSPSLSDSGQSLEPGQTAQRL--SWHGDDAR---RGLGV----ASGGVGVAGASWLRHHISTASEGTGSCSAGEASSGAEMGEAPPALSEEDLD------GFLEEGGGREWDRSSRPMVALKVG---NRPGRRRQTEIQRAVAEAELDLCTATGVDYYRDLAQSTELLAAEPAGKENGGPAEGSDTAAVVPAGQLRDPDDGVVGEDKEAFSPEQKDSGRAE----RQELEPGEVP 1621
BLAST of mRNA_H-canaliculatus_F_contig1038.392.1 vs. uniprot
Match: A0A6H5L5H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H4_9PHAE) HSP 1 Score: 337 bits (863), Expect = 2.800e-92 Identity = 421/1144 (36.80%), Postives = 528/1144 (46.15%), Query Frame = 1
Query: 421 AAHRTKSSSGRRKVVGGALGGT-GLSKRTATTRAVEGRTEQAHRVSASSVTAAVRGSGRGGRAVDMAASRAMAGGAGTKRSSVRRVLAEVQLDPDLPLPLPTFPGNGNVNTLEGVVKWQQQLHQVGSHGQHSNFTQPLRTNSLPGDLKHKGTNVKLAEV------HRHGYFVPGVVAPRQRQSHGLPQELRAISTVPTPEKRPA-KATSSS-GKRRRLHSRSSAA---SIKRGTTSALPLGPQAPAITSEARRVV-------LSSARPDPGSAAAMALSREQRRYTSQAVDELRKEMREREDRLERELDRRIRSRSPRVGKGAPAAFGGASSREPPKVVAKAGAAGGRSGAASATRGRGPKGRRRLL--------RDLASQRKPA-------ATYRVPVNEENDRRTKDSNSSQTANKPA----EAVDVQAQTANARVHVFLHSEPIIGDVLGTAADKRQPVPKDIPASGSHDQAQQTGRGVDRDGGHCLDDASLTSSSVSGGDVGLSSWRRGGLRESPPPPVVFIEGEGRNTVWRPSDDXXXXXXXXXXNSLRNGGITNGAGAEVLREAIDGGDSRLIHISPAEEKKEEGSDPKPGA-VTVTTGRAGLAASMSQQLAAAVQDDVWVELAGMLSLSASEPTTA-GLSNTSAPIEPASTRE--AVRPLPETPMVSPELLDLMREVVGQQRDMGEERSALMQALRAEVESRRLLLANXXXXXXXXXXXXXXX---ESEPLTTSMTSRLAAXXXXXXXXXXAEQYRQR-QEKGGQGTITIDGVEEGKFTARPPREERFWPGTSDQEAG-LAESDSEWSR--EGLR-AVTGDGQNGIVKEAAVILQ------EKQDSDRCGEASGQQPSHPFR-------------------------SNLGRVLAAGSGWRDVPLDEIR--APRKVFSTSLGRLLAVVPSRSCRE---LWYVGSKKAYARSIDNSKNVALLYALQEFLCEAERQASAGADTGVSSPQTAVRKRASALESRRFSKAMAEVESKWPVRGEREDGGIGSPCDS--GESEYSASEESTRIQTAPREGFSSPFPTLVKKDAPPDATQQPQQQ------PQLQDSGR--LNLSLATAVLSVAQRLSXXXXXXXXXXXXXXXXXRQALEDTRQE 3564
AA R +SS R V A GG G+S+R T + ++V++ R RGGRA D+A G T+R S RR L E+Q+DPD PLPLPTFPG+G + L G K HQ Q N+LPGDLKH G+ E H HGYFVPGVVAPRQRQSHGLP+ELRAIST+PTPEKR A +AT+S+ G+RRR+ SRS+ A S +R +A+P P P ++EA + +S++RPD GSAAA+A +R+QR +AVD LRKEM ERE R A G R G ++ R A KPA A R +EE + D + ++P E D QAQTA V ++LH +P I L A+ QP PK A H Q + G V+ H LDDAS S LS G SPP PVVF+EGEGRN WRP+DD +S G T+ GA E +DGGD+RLI ++ E +E D +P + +TTGR AA + VQ+ WVELAGML++SA+ PT +S T P+ E A + E SPELLDLMR XXXXXXXXXXXXXXX E+E S RL A +E+ +R GGQG E + RP +RFWP TS+ EA LAE ++ EG R V G G V A V+ EK+ + G ++ Q P FR SNLGRVLAAGSGWRDV L+E A KVF TSLGR LA P + + VG ++ A +QE L EA R+ D SP+TAVRKRASALESRRF AM E ESK R E DGG SP G++E A E+ R++ A P P D+P + +QQ P+ + G L+LSLATAVLSVAQRLS R+A+E+TR+E
Sbjct: 16 AADRHTTSSAR--VASRASGGVQGVSRRGGNTXXXXXXXXXXXXXTVAAVSSGARVGTRGGRAGDVAXXXXXXXGGVTRRPSDRRALVEMQVDPDRPLPLPTFPGHGKL--LGGEAKHHSNKHQQ---------QQAPSGNNLPGDLKHPGSGGGXXEADQPGGGHYHGYFVPGVVAPRQRQSHGLPRELRAISTIPTPEKRSASRATASAIGQRRRVRSRSALAQPPSARRA--AAVPAAPPLPRQSAEATAIGPGNGGYGVSTSRPDSGSAAALASARDQRMSARRAVDALRKEMLEREARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIGRRRGPTASXXXXXXXXXXXXXXXXXXPSSRVQAPTEKPAVAGAVAGAVSRDSADEEAEGADNDGDEGGRGSRPVARSVETADAQAQTAADGVQLYLHPQPAIRKALRLGAN--QPSPKGHAAGAHHQQTRSAGNVVEE---HYLDDASFLS---------LSRQLGGRRHVSPPGPVVFVEGEGRNRSWRPADDDRLLRGEGG-SSAAAFGATSATGAGGA-EDLDGGDARLI-LAAKEGGREXDDDGRPERDIRLTTGRLEAAAVAPES----VQNGAWVELAGMLAMSAAPPTARPSISET-----PSGEGEGQAGKNSTEAAAASPELLDLMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREAESGAASAALRLTAAAAAGADSTKSEEEGKRGSADGGQG--------EQQLVDRPTLTDRFWPITSEHEAAELAEESGSVTKGEEGPRMGVQGQG----VAAAKVVAARDDGGTEKEKGEAGGVSAQQPPPQTFRAFYLIKTLYIPKASDYLLFSVETRRSNLGRVLAAGSGWRDVSLEEDGDGAAEKVFKTSLGRALAGGPGGALEGEAGVLGVGGGANIGSGRSSTSRAAGEPDVQELLWEAGRRG----DAEDLSPETAVRKRASALESRRFLTAMTESESKR--RAESRDGGHSSPERDVDGDNEAEALEQDARVKAATEGRHRHPTP-----DSPLSVSSTVRQQXXXXLEPRQEGRGGEGLHLSLATAVLSVAQRLSTVEERALARVEGAEGLARKAMEETRRE 1095
BLAST of mRNA_H-canaliculatus_F_contig1038.392.1 vs. uniprot
Match: A0A6H5L4D1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D1_9PHAE) HSP 1 Score: 149 bits (375), Expect = 4.360e-34 Identity = 187/524 (35.69%), Postives = 236/524 (45.04%), Query Frame = 1
Query: 3598 IFRLKEMELGSERRAKVFAG---DIAKLREEGRFERQGIDQPSTQVRAQAPATPRHSSLSRGVDSSNTSESG--SSLDALCLA---AAPLRSGAYHQPIPARSESRSSMSEGQLRGYFSDGELLNSTPRSNSRYT-LEDGELPPS--PLRSPLPVRGGEESVIDAAGSVAGRDCDTRGD---PRKHLALLMSAHPHLE--ANRPSMRG--LQKNAHAHDHHPSGGRGGGTGDLRQGTPAGMGLHG-----------SGIWRLRPPEPTTKPNCPREVSVADDRVDDADNGSSLSDSGQSVEPGQVRTRVLRSWQESEVLTSDRGGGMCDRRAGGGQIELGSSWRRKH-QAASEDS-TPSAGEASSGVEMGETLATFLDDSIDRLSTDVGEIEERRGGMGARNTRPLVALHVGAGSTSDGQRAEIQRAIAEAELDLRTVAAQDC-----------------RLNGPVSESVQDDRKAADWKKTAGGRKHDGIGGTG-DLFGDVTKEAAPAEGAGSRERLEPGEVP 5022
+ RL+EME GS++RAKV A +IA+LR+EGR ERQ I Q QV++ P + + SS++S G S L+AL L A P + A+ P PAR TP SRY LE+GELPP PL R GE + GS AG + + G PR HL LLM AHP L+ NR S RG +Q +A G GG G L G G+ R R PE N V + DA SLSDSGQS+EPGQ R+ SW + RG G+ A GG G+SW R H ASED+ + S GEASSG EMGE ++ +D G +EE G R++RP+VAL VG ++ EIQRA+AEAELDL T A D GP +S A + A DG+ G + F K++ AE R+ LEPGEVP
Sbjct: 1 MHRLEEMEHGSKKRAKVVARVAREIAELRKEGRVERQRISQLQ-QVQSHTPQPQKAPXXXXSIPSSSSSSCGNRSFLEALSLEDSPAGPAVAVAHQHPTPARRL----------------------TPSGASRYNALEEGELPPXXXPLAQTRGNRSGEGEAL--GGSYAGHNWSSGGXXXGPRPHLTLLMPAHPRLKRGGNRGSSRGRRVQAPLYAQTDDGKGCSGGVAGXXXXXXRGSRSLGGPFPGTVREDGDGGLGRPRFPEQ----NAGLGVDIGGGVGGDA-GSPSLSDSGQSLEPGQAAHRL--SWHGDDAR---RGFGV----ASGGVGVAGASWLRHHISTASEDTGSCSVGEASSGAEMGEAPPALSEEDLD------GFLEEGGGREWDRSSRPMVALKVG-NRPGRRRKTEIQRAVAEAELDLCTATAVDYYRDLAQTTELAAEPAGKEKGGPAEDSDTAAVVPAGQLRDA----DDGVVGEDKEAFSPEQKDSDRAE----RKELEPGEVP 470
BLAST of mRNA_H-canaliculatus_F_contig1038.392.1 vs. uniprot
Match: A0A6H5K2S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2S2_9PHAE) HSP 1 Score: 131 bits (329), Expect = 1.880e-31 Identity = 70/104 (67.31%), Postives = 80/104 (76.92%), Query Frame = 1
Query: 10 GVPSLCALSVADVVVAEYEKLLAAIPTMAKHMGKLQSDTEAMAEGLEKRVRSLVDGYRELNELVEQAPSRLNDAALEYANTLDVPPQGSKSAFSGDVINEHSPD 321
GVP L +L+VAD VV EYEKLLAAIPTMA+HMGKLQ DTE MAEGLE+RVRSLVDGYRELNELV+QAP+R++DAA EYA L + + S GD N D
Sbjct: 36 GVPGLSSLTVADAVVTEYEKLLAAIPTMARHMGKLQLDTEVMAEGLERRVRSLVDGYRELNELVDQAPARVSDAASEYAQALGLR-RTQGSPLPGDAANRDGSD 138 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1038.392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1038.392.1 >prot_H-canaliculatus_F_contig1038.392.1 ID=prot_H-canaliculatus_F_contig1038.392.1|Name=mRNA_H-canaliculatus_F_contig1038.392.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1674bp MKGVPSLCALSVADVVVAEYEKLLAAIPTMAKHMGKLQSDTEAMAEGLEKback to top mRNA from alignment at H-canaliculatus_F_contig1038:9635..26659- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1038.392.1 ID=mRNA_H-canaliculatus_F_contig1038.392.1|Name=mRNA_H-canaliculatus_F_contig1038.392.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=17025bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1038:9635..26659- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1038:9635..26659- >mRNA_H-canaliculatus_F_contig1038.392.1 ID=mRNA_H-canaliculatus_F_contig1038.392.1|Name=mRNA_H-canaliculatus_F_contig1038.392.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=10044bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1038:9635..26659- (Hapterophycus canaliculatus Oshoro5f female)back to top |