mRNA_H-canaliculatus_F_contig10374.386.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10374.386.1
Unique NamemRNA_H-canaliculatus_F_contig10374.386.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10374.386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10374contigH-canaliculatus_F_contig10374:166..826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size528
Cds size528
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928675.1381316-CDS-H-canaliculatus_F_contig10374:165..5371622928675.1381316-CDS-H-canaliculatus_F_contig10374:165..537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10374 166..537 +
1696845523.0276935-CDS-H-canaliculatus_F_contig10374:165..5371696845523.0276935-CDS-H-canaliculatus_F_contig10374:165..537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10374 166..537 +
1622928675.1556277-CDS-H-canaliculatus_F_contig10374:670..8261622928675.1556277-CDS-H-canaliculatus_F_contig10374:670..826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10374 671..826 +
1696845523.0366168-CDS-H-canaliculatus_F_contig10374:670..8261696845523.0366168-CDS-H-canaliculatus_F_contig10374:670..826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10374 671..826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10374.386.1prot_H-canaliculatus_F_contig10374.386.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10374 166..826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10374.386.1

>prot_H-canaliculatus_F_contig10374.386.1 ID=prot_H-canaliculatus_F_contig10374.386.1|Name=mRNA_H-canaliculatus_F_contig10374.386.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=176bp
MVPINRKSRKTHDALGSEPAHGTGRKGSNTVDDSRFSREFSADAAPLVYR
VAVDDGNERHIEEVAVVLTGGCQKTCKGDLSGIPEVGKDTDLAAGCHCGT
FSKTDGTFPPFPVFAASPPLYKAQDASLQKASDDEQAAYKARQEGARGCN
NQAEVRAMAEEAAGARRQARIELAL*
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mRNA from alignment at H-canaliculatus_F_contig10374:166..826+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10374.386.1 ID=mRNA_H-canaliculatus_F_contig10374.386.1|Name=mRNA_H-canaliculatus_F_contig10374.386.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=661bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10374:166..826+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTCCCGATCAACAGGAAGAGCAGGAAGACGCACGATGCGCTGGGGTC
AGAGCCAGCGCACGGTACGGGGAGGAAAGGGTCCAACACGGTTGACGACT
CTCGTTTCTCTCGAGAGTTCTCGGCCGACGCCGCACCTCTTGTGTACCGC
GTAGCTGTCGACGACGGCAACGAGCGCCATATCGAGGAGGTGGCCGTGGT
GCTGACGGGTGGCTGCCAGAAGACCTGTAAAGGGGATTTGTCTGGCATCC
CCGAAGTCGGAAAGGATACAGATCTCGCCGCGGGGTGCCACTGTGGAACG
TTTTCGAAGACGGACGGCACTTTTCCGCCTTTTCCCGTGTTCGCGGCGTC
GCCCCCGTTGTACAAGGCCCAAGTGAGTACAGTAGCATTTTTGTGACAGG
CAATTCGTATGTAATCATCGACTCAACTCCAGCTGAGATTGAGATTCCCT
CATGTCACGGCACGACCTTTCAACTGTACTTTTTCCGACAACGCTACCCG
TCCAGGATGCGAGCCTTCAAAAGGCGTCTGACGACGAACAAGCCGCGTAC
AAGGCGAGGCAAGAGGGTGCGCGTGGCTGCAACAATCAAGCGGAAGTGCG
CGCCATGGCGGAGGAGGCTGCGGGGGCTAGGCGTCAGGCCAGGATAGAGT
TAGCCTTGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10374:166..826+

>mRNA_H-canaliculatus_F_contig10374.386.1 ID=mRNA_H-canaliculatus_F_contig10374.386.1|Name=mRNA_H-canaliculatus_F_contig10374.386.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1056bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10374:166..826+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTCCCGATCAACAGGAAGAGCAGGAAGACGCACGATGCGCTGGGGTC
AGAGCCAGCGCACGGTACGGGGAGGAAAGGGTCCAACACGGTTGACGACT
CTCGTTTCTCTCGAGAGTTCTCGGCCGACGCCGCACCTCTTGTGTACCGC
GTAGCTGTCGACGACGGCAACGAGCGCCATATCGAGGAGGTGGCCGTGGT
GCTGACGGGTGGCTGCCAGAAGACCTGTAAAGGGGATTTGTCTGGCATCC
CCGAAGTCGGAAAGGATACAGATCTCGCCGCGGGGTGCCACTGTGGAACG
TTTTCGAAGACGGACGGCACTTTTCCGCCTTTTCCCGTGTTCGCGGCGTC
GCCCCCGTTGTACAAGGCCCAAATGGTCCCGATCAACAGGAAGAGCAGGA
AGACGCACGATGCGCTGGGGTCAGAGCCAGCGCACGGTACGGGGAGGAAA
GGGTCCAACACGGTTGACGACTCTCGTTTCTCTCGAGAGTTCTCGGCCGA
CGCCGCACCTCTTGTGTACCGCGTAGCTGTCGACGACGGCAACGAGCGCC
ATATCGAGGAGGTGGCCGTGGTGCTGACGGGTGGCTGCCAGAAGACCTGT
AAAGGGGATTTGTCTGGCATCCCCGAAGTCGGAAAGGATACAGATCTCGC
CGCGGGGTGCCACTGTGGAACGTTTTCGAAGACGGACGGCACTTTTCCGC
CTTTTCCCGTGTTCGCGGCGTCGCCCCCGTTGTACAAGGCCCAAGATGCG
AGCCTTCAAAAGGCGTCTGACGACGAACAAGCCGCGTACAAGGCGAGGCA
AGAGGGTGCGCGTGGCTGCAACAATCAAGCGGAAGTGCGCGCCATGGCGG
AGGAGGCTGCGGGGGCTAGGCGTCAGGCCAGGATAGAGTTAGCCTTGTAG
GATGCGAGCCTTCAAAAGGCGTCTGACGACGAACAAGCCGCGTACAAGGC
GAGGCAAGAGGGTGCGCGTGGCTGCAACAATCAAGCGGAAGTGCGCGCCA
TGGCGGAGGAGGCTGCGGGGGCTAGGCGTCAGGCCAGGATAGAGTTAGCC
TTGTAG
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