mRNA_H-canaliculatus_F_contig10368.380.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10368.380.1
Unique NamemRNA_H-canaliculatus_F_contig10368.380.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10368.380.1 vs. uniprot
Match: D8LNR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR9_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 4.630e-125
Identity = 178/183 (97.27%), Postives = 182/183 (99.45%), Query Frame = 1 
Query:    1 MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAISKDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQMARQKKKALKAREQLFEVE 549
            MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAI+KDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQ+ARQK+K LKAREQLF+VE
Sbjct:    1 MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAITKDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQVARQKQKDLKAREQLFDVE 183
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10368.380.1 vs. uniprot
Match: A0A835YRC4_9STRA (G10 protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRC4_9STRA)

HSP 1 Score: 278 bits (712), Expect = 6.320e-92
Identity = 134/170 (78.82%), Postives = 149/170 (87.65%), Query Frame = 1 
Query:    1 MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAISKDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQMARQKK 510
            MSRFARKERPP GFEILEPTL ALE ELREKVN+ HEG R+ E+LWPV QI WQRSRYVYDM++VYK IS++V +YCIR KLVD  LMAKWKKPGY RLCSTYVIN KNYKFGTVSICRVP+Q+L   TVVED NTGCRGCA+G GG +NIFGNKYGQYLAAIQ+AR+K+
Sbjct:    1 MSRFARKERPPAGFEILEPTLTALEAELREKVNQPHEGLRRGESLWPVHQINWQRSRYVYDMYHVYKEISREVYDYCIRMKLVDAGLMAKWKKPGYGRLCSTYVINPKNYKFGTVSICRVPRQFLEPDTVVEDSNTGCRGCASGPGGQRNIFGNKYGQYLAAIQVARKKR 170
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10368.380.1 vs. uniprot
Match: A0A7S3XYK4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYK4_HETAK)

HSP 1 Score: 264 bits (674), Expect = 7.550e-87
Identity = 124/168 (73.81%), Postives = 139/168 (82.74%), Query Frame = 1 
Query:    1 MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAISKDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQMARQ 504
            MSRFARK + P GFE +EP L  LE ELREKVNE HEGKRK E+LWPV QI WQRSRY+YDM Y+YK IS++V +YCIR K  D  L+AKWKKPGYERLC T+VIN KNYKFGT SICRVPKQYLS GT+VEDV TGC GCA+G GG +NIFGNKYGQYLAAIQ+ R+
Sbjct:    1 MSRFARKMKAPEGFEYIEPVLTTLEEELREKVNEPHEGKRKCESLWPVHQINWQRSRYIYDMFYIYKHISREVYDYCIRMKFADAALIAKWKKPGYERLCCTFVINQKNYKFGTTSICRVPKQYLSKGTIVEDVTTGCMGCASGPGGQRNIFGNKYGQYLAAIQVERE 168
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10368.380.1 vs. uniprot
Match: A0A6U3Y7T5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3Y7T5_9STRA)

HSP 1 Score: 264 bits (674), Expect = 3.280e-86
Identity = 126/183 (68.85%), Postives = 151/183 (82.51%), Query Frame = 1 
Query:    1 MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAISKDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQMARQKKKALKAREQLFEVE 549
            MSRFARK +PP GF+ ++PTL+ LE+ELR+KVNEQHEGKR+ E++WPV QI WQRSRYVYD++Y YK ISK+V EYCIR KLVD  L+AKWKKPGYERLCSTYVINTKNYKFGTVSICRVPK  L    +VED +TGC GCA+G GG +NIFGNK+GQYLAAIQ++R+  + +    +L E E
Sbjct:   16 MSRFARKGKPPAGFDYIQPTLSVLEHELRDKVNEQHEGKRRVESIWPVHQINWQRSRYVYDLYYKYKKISKEVYEYCIRHKLVDAGLIAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKHSLGKDVIVEDPHTGCLGCASGPGGQRNIFGNKFGQYLAAIQVSREHAQEILQARRLAETE 198
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10368.380.1 vs. uniprot
Match: A0A7R9UFU0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFU0_9STRA)

HSP 1 Score: 263 bits (671), Expect = 7.930e-86
Identity = 121/168 (72.02%), Postives = 144/168 (85.71%), Query Frame = 1 
Query:    1 MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAISKDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQMARQ 504
            MS+FAR+ R PPGFE++EPTL AL+NE+RE+VNE HEG RKNE+LWPV QI WQR+RYVYDM+Y Y  IS++V +YC+R++++D  L AKWKKPGYERLCSTYVINT NYKFGTVSICRVP   L  GT+VEDV TGCRGCA+G GG +NIFGNKYGQYLA IQ+AR+
Sbjct:   28 MSKFARRGRVPPGFEVIEPTLEALDNEMRERVNESHEGYRKNESLWPVHQINWQRTRYVYDMYYKYGRISREVYDYCVRNRIIDSALAAKWKKPGYERLCSTYVINTLNYKFGTVSICRVPNFKLPPGTIVEDVTTGCRGCASGRGGMRNIFGNKYGQYLADIQVARE 195
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10368.380.1 vs. uniprot
Match: A0A7S2RFN8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFN8_9STRA)

HSP 1 Score: 258 bits (660), Expect = 2.950e-84
Identity = 122/168 (72.62%), Postives = 141/168 (83.93%), Query Frame = 1 
Query:    1 MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAISKDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQMARQ 504
            MSRF RK +PP GF+ +EP L++LENELR++VNE HEGKRK EALWPV QI WQRSRYV+DM+Y YK ISK+V +YCIR KLVD  L+AKWKK GYERLCSTYVINTKNYKFGT SICRVP   L+   +VED  TGC+GCA+G GG +NIFGNKYGQYLAAIQ+AR+
Sbjct:    1 MSRFGRKGKPPAGFDYIEPILSSLENELRDQVNESHEGKRKTEALWPVHQINWQRSRYVFDMYYKYKKISKEVYDYCIRMKLVDAALIAKWKKSGYERLCSTYVINTKNYKFGTTSICRVPGHALAPDVIVEDRTTGCQGCASGPGGQRNIFGNKYGQYLAAIQIARE 168
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10368.380.1 vs. uniprot
Match: A0A7S1XLK8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLK8_9STRA)

HSP 1 Score: 260 bits (664), Expect = 1.760e-82
Identity = 124/181 (68.51%), Postives = 148/181 (81.77%), Query Frame = 1 
Query:    1 MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAISKDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQMARQKKKALKAREQLFE 543
            MS+F R+ R P GFE++EPTL+ALENE+RE+VNE H+G RKNE LWPV QI WQR+RYVYDM+Y Y  IS++V +YC+R++++DG L AKWKKPGYERLCSTYVINT+NYKF TVSICRVPK  L  GT VEDV  GCRGC++G GG KNIFGNKYGQYLA IQ+AR+    LK  +QL E
Sbjct:   38 MSKFGRRGRVPEGFEVIEPTLDALENEIRERVNESHDGYRKNEGLWPVHQINWQRTRYVYDMYYKYGRISREVYDYCVRNRIIDGALAAKWKKPGYERLCSTYVINTRNYKFATVSICRVPKYKLPPGTTVEDVTVGCRGCSSGKGGYKNIFGNKYGQYLADIQVARE----LKLEKQLEE 214
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10368.380.1 vs. uniprot
Match: A0A812VRA9_SYMMI (Bud-31 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VRA9_SYMMI)

HSP 1 Score: 252 bits (644), Expect = 1.180e-81
Identity = 119/162 (73.46%), Postives = 137/162 (84.57%), Query Frame = 1 
Query:   31 PPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAISKDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQMARQKKKA 516
            P GF+ +EPTL ALENELREK+NE HEG RK E+ WPV QI WQRSRY++DM Y Y  IS++V +YCIR+KLVD  L+AKWKKPGYERLCSTYVINT+NYKFGTVSICRVP   L+ GT +ED  TGCRGCA+G GGNKNIFGNKYGQYLAAIQ+AR+ K+A
Sbjct:    5 PEGFDYVEPTLTALENELREKINEPHEGLRKTESQWPVHQINWQRSRYIFDMFYTYNRISREVYDYCIRNKLVDAGLIAKWKKPGYERLCSTYVINTRNYKFGTVSICRVPGHCLAPGTEIEDAVTGCRGCASGPGGNKNIFGNKYGQYLAAIQIARELKQA 166
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10368.380.1 vs. uniprot
Match: A0A225W4S8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W4S8_9STRA)

HSP 1 Score: 248 bits (633), Expect = 2.270e-80
Identity = 115/170 (67.65%), Postives = 144/170 (84.71%), Query Frame = 1 
Query:    1 MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAISKDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQMARQKK 510
            MS++++K R P G++ ++P ++ALE+ELREK+NE HEGKR+ EALWPV QI WQRSRYVYDM Y YK IS++V ++CIR KLVD  L+AKWKKPGYERLCST+ INTKNY +GTVSICRVP+Q LS G VV++ ++GCRGCA+G GG  NIFGNKYGQYLA IQ+AR++K
Sbjct:    1 MSKWSKKNREPAGYDYIQPVMDALESELREKMNEPHEGKRQCEALWPVHQINWQRSRYVYDMFYKYKKISREVYDFCIRRKLVDASLVAKWKKPGYERLCSTFAINTKNYNYGTVSICRVPRQQLSEGQVVQEKHSGCRGCASGPGGYHNIFGNKYGQYLARIQIAREEK 170
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10368.380.1 vs. uniprot
Match: A0A6G0XI44_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI44_9STRA)

HSP 1 Score: 248 bits (633), Expect = 3.370e-80
Identity = 114/172 (66.28%), Postives = 143/172 (83.14%), Query Frame = 1 
Query:    1 MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQITWQRSRYVYDMHYVYKAISKDVLEYCIRSKLVDGPLMAKWKKPGYERLCSTYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKNIFGNKYGQYLAAIQMARQKKKA 516
            MSRF +K RPPPG+E ++P ++ALE+ELREK  + HEG RK EA+WP+ QI WQRSRYVYDM+Y YK ISK+V +YC+R KL D  L+AKWKKPGYERLCST+ INTKNY +GTVSICRVP+Q L+ G +V++ ++GCRGCA+G GG  NIFGNKYGQYLAAIQ+ R+++ A
Sbjct:    1 MSRFTKKGRPPPGYEYIQPVMDALESELREKTTDPHEGLRKCEAMWPIQQINWQRSRYVYDMYYKYKKISKEVYDYCLRMKLADANLIAKWKKPGYERLCSTFAINTKNYNYGTVSICRVPRQQLADGQLVQERHSGCRGCASGPGGYHNIFGNKYGQYLAAIQIMRERRGA 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10368.380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNR9_ECTSI4.630e-12597.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YRC4_9STRA6.320e-9278.82G10 protein-domain-containing protein n=1 Tax=Trib... [more]
A0A7S3XYK4_HETAK7.550e-8773.81Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6U3Y7T5_9STRA3.280e-8668.85Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9UFU0_9STRA7.930e-8672.02Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2RFN8_9STRA2.950e-8472.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1XLK8_9STRA1.760e-8268.51Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A812VRA9_SYMMI1.180e-8173.46Bud-31 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A225W4S8_9STRA2.270e-8067.65Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6G0XI44_9STRA3.370e-8066.28Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10368contigH-canaliculatus_F_contig10368:1711..4965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score372.1
Seed ortholog evalue1.7e-100
Seed eggNOG ortholog2880.D8LNR9
Preferred nameBUD31
KEGG koko:K01369,ko:K12873,ko:K17285
KEGG Pathwayko03040,ko04142,ko04612,map03040,map04142,map04612
KEGG ModuleM00355
GOsGO:0000278,GO:0000281,GO:0000282,GO:0000375,GO:0000377,GO:0000398,GO:0000910,GO:0003674,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007049,GO:0007163,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0010647,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022402,GO:0023051,GO:0023056,GO:0030010,GO:0030374,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0033143,GO:0033145,GO:0034641,GO:0035257,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051301,GO:0051427,GO:0060255,GO:0060765,GO:0061640,GO:0065007,GO:0065009,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0080090,GO:0090304,GO:0097525,GO:0120114,GO:0140110,GO:1901360,GO:1902494,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000273,GO:2000823,GO:2000825,GO:2001141
EggNOG free text desc.Protein BUD31 homolog
EggNOG OGsCOG5132@1,KOG3404@2759
EC3.4.22.34
COG Functional cat.DK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionG10 protein
Ec32 orthologEc-08_006080.1
Exons5
Model size630
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10368.380.1prot_H-canaliculatus_F_contig10368.380.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10368 1711..4965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928674.373306-CDS-H-canaliculatus_F_contig10368:1710..18011622928674.373306-CDS-H-canaliculatus_F_contig10368:1710..1801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10368 1711..1801 +
1696845522.6769743-CDS-H-canaliculatus_F_contig10368:1710..18011696845522.6769743-CDS-H-canaliculatus_F_contig10368:1710..1801Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10368 1711..1801 +
1622928674.3860703-CDS-H-canaliculatus_F_contig10368:2472..26211622928674.3860703-CDS-H-canaliculatus_F_contig10368:2472..2621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10368 2473..2621 +
1696845522.689303-CDS-H-canaliculatus_F_contig10368:2472..26211696845522.689303-CDS-H-canaliculatus_F_contig10368:2472..2621Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10368 2473..2621 +
1622928674.3970706-CDS-H-canaliculatus_F_contig10368:3076..31931622928674.3970706-CDS-H-canaliculatus_F_contig10368:3076..3193Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10368 3077..3193 +
1696845522.698065-CDS-H-canaliculatus_F_contig10368:3076..31931696845522.698065-CDS-H-canaliculatus_F_contig10368:3076..3193Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10368 3077..3193 +
1622928674.5824866-CDS-H-canaliculatus_F_contig10368:3881..40161622928674.5824866-CDS-H-canaliculatus_F_contig10368:3881..4016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10368 3882..4016 +
1696845522.7093816-CDS-H-canaliculatus_F_contig10368:3881..40161696845522.7093816-CDS-H-canaliculatus_F_contig10368:3881..4016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10368 3882..4016 +
1622928674.595762-CDS-H-canaliculatus_F_contig10368:4827..49651622928674.595762-CDS-H-canaliculatus_F_contig10368:4827..4965Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10368 4828..4965 +
1696845522.724893-CDS-H-canaliculatus_F_contig10368:4827..49651696845522.724893-CDS-H-canaliculatus_F_contig10368:4827..4965Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10368 4828..4965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10368.380.1

>prot_H-canaliculatus_F_contig10368.380.1 ID=prot_H-canaliculatus_F_contig10368.380.1|Name=mRNA_H-canaliculatus_F_contig10368.380.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=210bp
MSRFARKERPPPGFEILEPTLNALENELREKVNEQHEGKRKNEALWPVFQ
ITWQRSRYVYDMHYVYKAISKDVLEYCIRSKLVDGPLMAKWKKPGYERLC
STYVINTKNYKFGTVSICRVPKQYLSAGTVVEDVNTGCRGCATGAGGNKN
IFGNKYGQYLAAIQMARQKKKALKAREQLFEVEEEEEEEEEEGGGGGGGG
EDRGSDKRGG
back to top

mRNA from alignment at H-canaliculatus_F_contig10368:1711..4965+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10368.380.1 ID=mRNA_H-canaliculatus_F_contig10368.380.1|Name=mRNA_H-canaliculatus_F_contig10368.380.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3255bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10368:1711..4965+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCAGATTTGCAAGGAAAGAGCGTCCTCCTCCCGGCTTTGAGATTCT
GGAACCTACGCTTAATGCGCTTGAGAACGAGCTTCGGGAAAGTGAGTTTG
CCATCGACCACCCCTATTTTGTCCCGGTAGGCAACCTTGCCGCTCCAGCA
GCGTTAGCCTAACGGCTCACAGGGTGCTAACCATCGTGTTTTGCCACCTC
ACCTTGCGGTAGGACGACCATATGGGTGCATTTAAGCCCGTGCGTGTCTC
ACCTCCTTTTAATCTTATTTCTACTCTGTTGCGGTAATTGACCTTTCTTC
TTGTACGCGAAACATCCCACGCAGCGGAGAGCAGGCTGTCTTGCTTGCTT
TCCCGTCTCCGATGAAGAGCGGCTTCTCTCTTCCAACCCTCAACCTTTTT
GATCGGCCTCTGAGTCTACGACAGCAGCAGGAGCTTCGATTGATTGTGCT
ATCTCCTCGCGTCGGCCGTTGGCACCCTGGACGATTGCTCTCGAACATAC
AATTATATTCTTCGTGCTGTATAGGACGTGCCCGCAAGCCTGCCCAACCG
TGGTTTTGACCTGGCAGGCATGGTCGTGTGCGTAGGGTGTACCTGTAGTG
CGGGTATCGATACTCGTATCGCATCTGTTGCTTCTATTGTTCGGGTTGCC
GCTGCTATCTCGTTTGTTGGCTTGACCAGCCGATATCAACTCACTCGAGA
TCCATGACTGAAATGTCCTCAACGGTGGACTGCTTTTTTCTCTGCCACTC
GGAAATGCCTAGAGGTGAACGAGCAGCATGAAGGTAAGCGAAAGAACGAA
GCGCTGTGGCCGGTGTTCCAGATCACCTGGCAGCGGTCTCGATACGTGTA
CGACATGCACTACGTGTACAAGGCCATCTCCAAGGACGTCCTGGAGTACT
GCATTCGCAGTGTGAGTGGAGAAACGGCTAGTCCGTACTCGGTGGGTTTT
TACGTCAAAGTGCAACGCCTACCGAACCGCTGCCCAGTCCTTGTTGTCGA
TGTTTCTGTAGCGGAGCAAGCCAAACAAGTCGACACAAGTTTCTGAGTCC
GGTGCTGCATGCTACCTATGCTTGCTGACTGTCGGCCATATCATACTTCG
ACACGAATCGCAAAAGTTGTGCTTGACCTCGTGATGTTTCCTTATGGCAA
ATGGTATTCCTTTAGTTTGTTAACCTTTTTTTCAAAATGCTCCCAATATT
ACACACGTGATTTCCGATTCTTGACATGTTATCATGTTATTATGTTATCA
TGAGCCAGCCAATTCCGCCCTGCGATCGCTCTAAGCTTTACTAACACACG
CGCACAGAGCAGTATCGAGTCAGCGGAAAATCGATGCCGAAATTCCCAAT
ATTCATCTTGCCGCAGAAACTGGTAGACGGTCCTCTGATGGCGAAGTGGA
AGAAGCCCGGCTACGAGCGGCTTTGCAGCACGTACGTGATCAACACCAAG
AACTACAAGTTTGGGACTGTCAGCATCTGCAGGGTTAGTGCGAAGTGACG
AGGCCGAGTTGTGTCTCGATCGAGCGGGTGGTGGTCCTTGTCGCCTGCGT
CTTGCAGGTACTGTCCTAGCGACGACATCAGCATCCAGAAGGTGCTCTGT
CCGACGACTCCGGGGTTGGTCACAGCCAAGCCGCTTTGGACCTTTGGGCC
TTTGCAGCTGTTTCGTCCTGTTGGCACCCGCGGCGGTTCTACCAGCGAGT
TGTAGGCTTCGCCCGGCGGTGTTGATGCTTGCATCTTGTCTTGCAGCTGC
GAACTCCGGCATCTCCGTGACGTGTCCCCAGCGTAGTAGTTGTGGTGCCG
TTGTGTGGCGTGCGGGGCCTTTCGATAGCCCTCTCTTCATCCGTTTTCCG
CGCGAGGTATGGCATACGCTACGTTTGGACGTGTTTGTTCGCACGAAATC
GCAGGGAGAGTGCAGCTTTTTAAGCTGCTTGCGGAAGGGCCCTGTACAGA
ATGACCTGGCTCCGACAAGATCTCTTACCTTTCTCGCGTTCGGTATGGGA
ACACACGGACGCTCGTCTTTCTTGATTTTTTTGTCTCTCTCTCTCTTTCT
CTCTCCTCTCTGGCCGTACGTGGAGCGAATACAAGGAGGCCCCACCTCCA
GCAGGGGCCCTAGGTTGCTAATGCTAGTTCTCTGTTAATGCACGGGTTGC
CGCTACGGTTGCCACCCGTAGGTGCCGAAGCAATACCTGTCCGCTGGGAC
GGTGGTAGAGGACGTCAACACCGGTTGCCGGGGGTGTGCCACGGGAGCGG
GGGGAAACAAAAATATCTTCGGCAACAAATACGGGCAGTACCTGGCCGCT
ATCCAAGTGAGTTGGGATGTCGGGGGGGGGGGGATGCCCTGTGTTGTAAC
CTTTGCGAGTGTGTTTCAGGCGTGCATGCAGTTGATCGGAAGACTGGGAG
CGCAGCTTTCCTGGCAACCCTCACAGCACATGGCACGGTGCGTGGTCCAT
CTTGACTCCGTCGATGCCTTGCAAACTGCGTTGTAACCTGAAGCACGATG
GGGATCCACTCCTGTGGTGGCTATCGTGTGCTCTCTGTGCGCGATGGGTC
AATTTATTCACGGCGGCCGTTCGGTGTAAACCACCGTGAGACCCTCACGA
GTGATCGTCGCGGAGACGGGGGTGCTCCAAGCTGCGGGCTCTCTCCCGGA
AGTTGTGGGAAGCCAGAGGTGTCCAGCACGGCGCCGTGATGTTTCAGACA
TGGCACCTGGTGGAAAGCTTCTCAAAAGACACTAACCCCAGCGTTGGTTG
GTGTCCTCTCTCGTCGAACAGAAGATCAGACGTGCAAATCGCTTCACAAG
TACGCACGGCGAGCAGCCTACTTGAGTGCAACGGACGAGTGGCTTCGAAG
GAAAAGAGGCGGCCGGCAACGGCTGCAAGGTTCCCCCTGCGCCCAATCCT
CTCCACCGCATACTTTGGACCCTCGCATACGTTGGACAATTCACAGAGGT
CAGATTGGAACCTCGTGGCCGAACAGAACTTGAACACAAGCCGCGACGAC
CCTAGCCATTTTCCAGCCACTGGTCAACCCCCGTGGCATTGCCTGTTCTG
AAGAGTACCCGACATGCATGCCTTTGCCGCCGAAAACAACTCCCCACGAC
GGCTTCTGTCGACTCAGATGGCTAGGCAGAAGAAGAAGGCGCTGAAAGCC
AGGGAACAGCTCTTCGAGGTGGAGGAGGAGGAGGAGGAAGAGGAGGAGGA
AGGTGGCGGAGGGGGGGGCGGGGGGGAAGACAGGGGGTCGGATAAGCGGG
GCGGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10368:1711..4965+

>mRNA_H-canaliculatus_F_contig10368.380.1 ID=mRNA_H-canaliculatus_F_contig10368.380.1|Name=mRNA_H-canaliculatus_F_contig10368.380.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1260bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10368:1711..4965+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCAGATTTGCAAGGAAAGAGCGTCCTCCTCCCGGCTTTGAGATTCT
GGAACCTACGCTTAATGCGCTTGAGAACGAGCTTCGGGAAAATGTCCAGA
TTTGCAAGGAAAGAGCGTCCTCCTCCCGGCTTTGAGATTCTGGAACCTAC
GCTTAATGCGCTTGAGAACGAGCTTCGGGAAAAGGTGAACGAGCAGCATG
AAGGTAAGCGAAAGAACGAAGCGCTGTGGCCGGTGTTCCAGATCACCTGG
CAGCGGTCTCGATACGTGTACGACATGCACTACGTGTACAAGGCCATCTC
CAAGGACGTCCTGGAGTACTGCATTCGCAGTAGGTGAACGAGCAGCATGA
AGGTAAGCGAAAGAACGAAGCGCTGTGGCCGGTGTTCCAGATCACCTGGC
AGCGGTCTCGATACGTGTACGACATGCACTACGTGTACAAGGCCATCTCC
AAGGACGTCCTGGAGTACTGCATTCGCAGTAAACTGGTAGACGGTCCTCT
GATGGCGAAGTGGAAGAAGCCCGGCTACGAGCGGCTTTGCAGCACGTACG
TGATCAACACCAAGAACTACAAGTTTGGGACTGTCAGCATCTGCAGGAAA
CTGGTAGACGGTCCTCTGATGGCGAAGTGGAAGAAGCCCGGCTACGAGCG
GCTTTGCAGCACGTACGTGATCAACACCAAGAACTACAAGTTTGGGACTG
TCAGCATCTGCAGGGTGCCGAAGCAATACCTGTCCGCTGGGACGGTGGTA
GAGGACGTCAACACCGGTTGCCGGGGGTGTGCCACGGGAGCGGGGGGAAA
CAAAAATATCTTCGGCAACAAATACGGGCAGTACCTGGCCGCTATCCAAG
TGCCGAAGCAATACCTGTCCGCTGGGACGGTGGTAGAGGACGTCAACACC
GGTTGCCGGGGGTGTGCCACGGGAGCGGGGGGAAACAAAAATATCTTCGG
CAACAAATACGGGCAGTACCTGGCCGCTATCCAAATGGCTAGGCAGAAGA
AGAAGGCGCTGAAAGCCAGGGAACAGCTCTTCGAGGTGGAGGAGGAGGAG
GAGGAAGAGGAGGAGGAAGGTGGCGGAGGGGGGGGCGGGGGGGAAGACAG
GGGGTCGGATAAGCGGGGCGGAATGGCTAGGCAGAAGAAGAAGGCGCTGA
AAGCCAGGGAACAGCTCTTCGAGGTGGAGGAGGAGGAGGAGGAAGAGGAG
GAGGAAGGTGGCGGAGGGGGGGGCGGGGGGGAAGACAGGGGGTCGGATAA
GCGGGGCGGA
back to top