mRNA_H-canaliculatus_F_contig10358.371.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10358.371.1
Unique NamemRNA_H-canaliculatus_F_contig10358.371.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10358.371.1 vs. uniprot
Match: D7FIE5_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.440e-29
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1
Query:   13 GTEVNNELCSSMPGPGCDADSGNIQNTPGEGFIHVHRGFHGVGDLAEASYDWRNPVAEVFIAKI 204
            GTEVN+E CS++PGPGC A SGN QN PGEG+IHVHRG HGVGDL EASYDWRNPVAE++I K+
Sbjct:  160 GTEVNDERCSNIPGPGCPAGSGNNQNGPGEGYIHVHRGVHGVGDLEEASYDWRNPVAEIYIQKL 223          
BLAST of mRNA_H-canaliculatus_F_contig10358.371.1 vs. uniprot
Match: D7G4K4_ECTSI (Spondin domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.030e-28
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1
Query:   13 GTEVNNELCSSMPGPGCDADSGNIQNTPGEGFIHVHRGFHGVG-DLAEASYDWRNPVAEVFIAK 201
            GTE NNELC+ +PGP C ADSGN+++ PGE FIHVHRGFHGVG DL EA+YDWRNPVAEVFIA+
Sbjct:  154 GTEANNELCTHIPGPACPADSGNMEDVPGEEFIHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 217          
BLAST of mRNA_H-canaliculatus_F_contig10358.371.1 vs. uniprot
Match: D7G4K3_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.870e-25
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1
Query:   13 GTEVNNELCSSMPGPGCDADSGNIQNTPGEGFIHVHRGFHGVG-DLAEASYDWRNPVAEVFIA 198
            GTE NNELC+ +PGP C ADSGN+++ PGEGFI V RGFHGVG DL EA+YDWRNPVAEV +A
Sbjct:  137 GTEANNELCTHIPGPACPADSGNMEDGPGEGFISVSRGFHGVGPDLGEANYDWRNPVAEVVVA 199          
BLAST of mRNA_H-canaliculatus_F_contig10358.371.1 vs. uniprot
Match: A0A7S1D5Z8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5Z8_CYCTE)

HSP 1 Score: 86.3 bits (212), Expect = 4.630e-20
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    4 LTPGTEVNNELCSSMPGPGCDA-DSGNIQNTPGEGFIHVHRGFHGVGDLAEASYDWRNPVAEV 189
            L  G+EVNNELCSS+PGPGC   ++ N+ +  GEG++ VH+GFHGVGDL  A YDWRNP A V
Sbjct:   61 LDAGSEVNNELCSSIPGPGCAMINTTNVASGDGEGYVFVHKGFHGVGDLPAAEYDWRNPAAVV 123          
BLAST of mRNA_H-canaliculatus_F_contig10358.371.1 vs. uniprot
Match: A0A7C1XZS2_9GAMM (Spondin domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1XZS2_9GAMM)

HSP 1 Score: 85.1 bits (209), Expect = 1.610e-18
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   13 GTEVNNELCSSMPGPGCDADSGNIQNTPGEGFIHVHRGFHGVGDLAEASYDWRNPVAEVFIAKIPTDSED 222
            G+E+NNELC+ +PGP C   SGN +   GEGF+ +H+G HGVGDL   + DWR PVA V I +I    +D
Sbjct:  171 GSELNNELCAYIPGPPCSPTSGNARTATGEGFVTIHKGVHGVGDLDAVALDWRGPVARVTITRIRKGDDD 240          
BLAST of mRNA_H-canaliculatus_F_contig10358.371.1 vs. uniprot
Match: UPI0015C41B44 (spondin domain-containing protein n=1 Tax=Candidatus Entotheonella palauensis TaxID=93172 RepID=UPI0015C41B44)

HSP 1 Score: 82.8 bits (203), Expect = 3.060e-18
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   13 GTEVNNELCSSMPGPG--CDADSGNIQNTPGEGFIHVHRGFHGVGDLAEASYDWRNPVAEVFIAKIP 207
            GTE N+ELC+ +PGP   C  +  N+     EGF+HVHRG HG+GDL  + YDWRNPVA V I+ +P
Sbjct:  104 GTEFNDELCAHIPGPASVCTGEGFNMSRDNAEGFVHVHRGIHGIGDLNASVYDWRNPVARVSISAMP 170          
BLAST of mRNA_H-canaliculatus_F_contig10358.371.1 vs. uniprot
Match: A0A3D0SSZ2_9GAMM (Spondin domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D0SSZ2_9GAMM)

HSP 1 Score: 83.6 bits (205), Expect = 4.210e-18
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   13 GTEVNNELCSSMPGPGCDADSGNIQNTPGEGFIHVHRGFHGVGDLAEASYDWRNPVAEVFIAKI 204
            G+E N+ELC S+PGP C  + G+     GEGF+H+H G HG+GDL  A YDWRNP+A V + KI
Sbjct:  155 GSEPNDELCKSIPGPDCGGEGGS-PGAGGEGFVHIHAGIHGIGDLQAAEYDWRNPMASVTVQKI 217          
BLAST of mRNA_H-canaliculatus_F_contig10358.371.1 vs. uniprot
Match: A0A369T711_9PROT (Spondin domain-containing protein n=1 Tax=Ferruginivarius sediminum TaxID=2661937 RepID=A0A369T711_9PROT)

HSP 1 Score: 82.0 bits (201), Expect = 1.940e-17
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   13 GTEVNNELCSSMPGPGCDADSGNIQNTPGEGFIHVHRGFHGVGDLAEASYDWRNPVAEVFIAKIP 207
            GTE N+ELC+ +PG G  A  G +    GEG++H+H G HG+GDLAE ++DWRNPVA + I+++P
Sbjct:  162 GTEPNSELCADIPGGGGCAGEG-LSAEDGEGYVHIHAGIHGIGDLAENTFDWRNPVARIVISRVP 225          
BLAST of mRNA_H-canaliculatus_F_contig10358.371.1 vs. uniprot
Match: D7G406_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G406_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.100e-17
Identity = 39/69 (56.52%), Postives = 45/69 (65.22%), Query Frame = 1
Query:    1 PLTPGTEVNNELCSSMPGPGCDADSGNIQN--TPGEGFIHVHRGFHGVGDLAEASYDWRNPVAEVFIAK 201
            P   GTE NNE CS MPG    A     +N     EGFIHVHRG  GVGDL++A YDW+NPVAEV ++K
Sbjct:   12 PPRKGTEKNNEKCSCMPGRAWPASPKTRENHGRGSEGFIHVHRGIKGVGDLSQADYDWKNPVAEVAVSK 80          
BLAST of mRNA_H-canaliculatus_F_contig10358.371.1 vs. uniprot
Match: A0A7U6JI78_9GAMM (Spondin domain-containing protein n=1 Tax=Thiolapillus brandeum TaxID=1076588 RepID=A0A7U6JI78_9GAMM)

HSP 1 Score: 81.6 bits (200), Expect = 2.280e-17
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   13 GTEVNNELCSSMPGPGCDADSGNIQNTPGEGFIHVHRGFHGVGDLAEASYDWRNPVAEVFIAKI 204
            GTE+N+ELCS++PGP C     +++N  GEGFI VH G HGVGDLA  +YDWRNP A V I ++
Sbjct:  155 GTEMNDELCSNIPGPDCGGAGMSVEN--GEGFISVHPGIHGVGDLAPGTYDWRNPAAMVKIERM 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10358.371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIE5_ECTSI1.440e-2976.56Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
D7G4K4_ECTSI2.030e-2876.56Spondin domain-containing protein n=3 Tax=Ectocarp... [more]
D7G4K3_ECTSI2.870e-2573.02Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1D5Z8_CYCTE4.630e-2061.90Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7C1XZS2_9GAMM1.610e-1851.43Spondin domain-containing protein n=1 Tax=Gammapro... [more]
UPI0015C41B443.060e-1853.73spondin domain-containing protein n=1 Tax=Candidat... [more]
A0A3D0SSZ2_9GAMM4.210e-1854.69Spondin domain-containing protein n=1 Tax=Gammapro... [more]
A0A369T711_9PROT1.940e-1752.31Spondin domain-containing protein n=1 Tax=Ferrugin... [more]
D7G406_ECTSI2.100e-1756.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7U6JI78_9GAMM2.280e-1757.81Spondin domain-containing protein n=1 Tax=Thiolapi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10358contigH-canaliculatus_F_contig10358:2516..2740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue5.2e-23
Seed eggNOG ortholog2880.D7FIE5
EggNOG OGs28TMI@1,2S5Q9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_000580.1
Exons1
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928672.9420156-CDS-H-canaliculatus_F_contig10358:2515..27401622928672.9420156-CDS-H-canaliculatus_F_contig10358:2515..2740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10358 2516..2740 -
1696845522.165121-CDS-H-canaliculatus_F_contig10358:2515..27401696845522.165121-CDS-H-canaliculatus_F_contig10358:2515..2740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10358 2516..2740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10358.371.1prot_H-canaliculatus_F_contig10358.371.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10358 2516..2740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10358.371.1

>prot_H-canaliculatus_F_contig10358.371.1 ID=prot_H-canaliculatus_F_contig10358.371.1|Name=mRNA_H-canaliculatus_F_contig10358.371.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=75bp
PLTPGTEVNNELCSSMPGPGCDADSGNIQNTPGEGFIHVHRGFHGVGDLA
EASYDWRNPVAEVFIAKIPTDSED*
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mRNA from alignment at H-canaliculatus_F_contig10358:2516..2740-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10358.371.1 ID=mRNA_H-canaliculatus_F_contig10358.371.1|Name=mRNA_H-canaliculatus_F_contig10358.371.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=225bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10358:2516..2740- (Hapterophycus canaliculatus Oshoro5f female)
CCGTTGACCCCAGGCACCGAAGTCAACAACGAGCTCTGCTCCTCGATGCC CGGCCCGGGATGCGACGCGGACAGCGGCAACATCCAGAACACTCCGGGAG AGGGCTTCATCCACGTGCACCGGGGTTTCCACGGGGTGGGAGACCTGGCG GAGGCCAGCTACGACTGGAGGAACCCGGTGGCCGAGGTCTTCATCGCTAA GATTCCCACTGACAGCGAAGACTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10358:2516..2740-

>mRNA_H-canaliculatus_F_contig10358.371.1 ID=mRNA_H-canaliculatus_F_contig10358.371.1|Name=mRNA_H-canaliculatus_F_contig10358.371.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10358:2516..2740- (Hapterophycus canaliculatus Oshoro5f female)
CCGTTGACCCCAGGCACCGAAGTCAACAACGAGCTCTGCTCCTCGATGCC
CGGCCCGGGATGCGACGCGGACAGCGGCAACATCCAGAACACTCCGGGAG
AGGGCTTCATCCACGTGCACCGGGGTTTCCACGGGGTGGGAGACCTGGCG
GAGGCCAGCTACGACTGGAGGAACCCGGTGGCCGAGGTCTTCATCGCTAA
GATTCCCACTGACAGCGAAGACTAACCGTTGACCCCAGGCACCGAAGTCA
ACAACGAGCTCTGCTCCTCGATGCCCGGCCCGGGATGCGACGCGGACAGC
GGCAACATCCAGAACACTCCGGGAGAGGGCTTCATCCACGTGCACCGGGG
TTTCCACGGGGTGGGAGACCTGGCGGAGGCCAGCTACGACTGGAGGAACC
CGGTGGCCGAGGTCTTCATCGCTAAGATTCCCACTGACAGCGAAGACTAA
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