mRNA_H-canaliculatus_F_contig1034.356.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1034.356.1
Unique NamemRNA_H-canaliculatus_F_contig1034.356.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1034.356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1034contigH-canaliculatus_F_contig1034:8558..9428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1034.356.1prot_H-canaliculatus_F_contig1034.356.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1034 8558..9423 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928671.1287951-CDS-H-canaliculatus_F_contig1034:8557..85951622928671.1287951-CDS-H-canaliculatus_F_contig1034:8557..8595Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1034 8558..8595 -
1696845521.3922443-CDS-H-canaliculatus_F_contig1034:8557..85951696845521.3922443-CDS-H-canaliculatus_F_contig1034:8557..8595Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1034 8558..8595 -
1622928671.1454442-CDS-H-canaliculatus_F_contig1034:9164..94231622928671.1454442-CDS-H-canaliculatus_F_contig1034:9164..9423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1034 9165..9423 -
1696845521.4054441-CDS-H-canaliculatus_F_contig1034:9164..94231696845521.4054441-CDS-H-canaliculatus_F_contig1034:9164..9423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1034 9165..9423 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928671.1567774-UTR-H-canaliculatus_F_contig1034:9423..94281622928671.1567774-UTR-H-canaliculatus_F_contig1034:9423..9428Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1034 9424..9428 -
1696845521.4182074-UTR-H-canaliculatus_F_contig1034:9423..94281696845521.4182074-UTR-H-canaliculatus_F_contig1034:9423..9428Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1034 9424..9428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1034.356.1

>prot_H-canaliculatus_F_contig1034.356.1 ID=prot_H-canaliculatus_F_contig1034.356.1|Name=mRNA_H-canaliculatus_F_contig1034.356.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
MQRYALHTFGMYRSTPACSTHARPSCSYRARIPPCLSQVRNFRRQLGATL
HFSPQSPAAGGHASQSSHMPTLRSEVLPSLAQVSRQGVREERRQHRVIV
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mRNA from alignment at H-canaliculatus_F_contig1034:8558..9428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1034.356.1 ID=mRNA_H-canaliculatus_F_contig1034.356.1|Name=mRNA_H-canaliculatus_F_contig1034.356.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=871bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1034:8558..9428- (Hapterophycus canaliculatus Oshoro5f female)
AGCTTATGCAGCGGTATGCTCTGCACACCTTTGGTATGTACCGCAGCACT
CCCGCATGCTCAACGCACGCCCGCCCGAGCTGTTCTTACCGAGCACGAAT
TCCGCCATGCCTGTCGCAGGTTAGAAATTTCCGCCGGCAGTTAGGCGCGA
CCTTGCACTTCAGCCCACAGTCACCTGCAGCGGGAGGACATGCATCACAG
AGCTCTCACATGCCAACTCTGCGGTCGGAAGTACTTCCCAGCCTCGCTCA
AGTTTCACGTCAAGGTGCCAGTGATTAATGTCGAGTAGGGCACGTGAAAT
GCTGCGAAGCGCCAACGGAGGTCTATAGTGAACCTCGGTAAATACTGATA
CAATTCTATGGCTTTCATTGTTCTCCATCGTCTAAACCTTGATGGTCGTT
TGTACACCTCAGCGAGCAGCGTACAGCAGAAGCACCTACTTCTCTTAGTG
TTCCACACCACTTCGCCGAGGCCAGCGAGCAGTGTACAGCAGCAGCACCT
ACTTCTTTTAGTCTTCCACAGCATTTCGCCGTGCCCTCAGGAGCAACGAA
GAAGCGCCTGCTGCACTCAATGAATTGATCAACCGATTTGTCGTCCAAGA
CGACGCATGCGTGTCGGTGTAAATGGTGAACGATTACTGTACGAGGAGCT
TTTTCTTTCATCATTCCGCATTTTTAACTGCAGTCTGTCTGTCAATCAGA
CAAACACTCGCCGCAAGCTCTTTTTTCGTCCACTGTTGCTGTATTCATGA
TTCTACCTCACGAAGAGGTCGGGCAGTGTCGACCACGAGTTTACAATACT
ACTGTCTGGAATCACGTTTCTATTTGGGTACAGGTGTGCGTGAAGAAAGA
AGACAACATCGAGTTATCGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1034:8558..9428-

>mRNA_H-canaliculatus_F_contig1034.356.1 ID=mRNA_H-canaliculatus_F_contig1034.356.1|Name=mRNA_H-canaliculatus_F_contig1034.356.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1034:8558..9428- (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGCGGTATGCTCTGCACACCTTTGGTATGTACCGCAGCACTCCCGC
ATGCTCAACGCACGCCCGCCCGAGCTGTTCTTACCGAGCACGAATTCCGC
CATGCCTGTCGCAGGTTAGAAATTTCCGCCGGCAGTTAGGCGCGACCTTG
CACTTCAGCCCACAGTCACCTGCAGCGGGAGGACATGCATCACAGAGCTC
TCACATGCCAACTCTGCGGTCGGAAGTACTTCCCAGCCTCGCTCAAGTTT
CACGTCAAGATGCAGCGGTATGCTCTGCACACCTTTGGTATGTACCGCAG
CACTCCCGCATGCTCAACGCACGCCCGCCCGAGCTGTTCTTACCGAGCAC
GAATTCCGCCATGCCTGTCGCAGGTTAGAAATTTCCGCCGGCAGTTAGGC
GCGACCTTGCACTTCAGCCCACAGTCACCTGCAGCGGGAGGACATGCATC
ACAGAGCTCTCACATGCCAACTCTGCGGTCGGAAGTACTTCCCAGCCTCG
CTCAAGTTTCACGTCAAGGTGTGCGTGAAGAAAGAAGACAACATCGAGTT
ATCGTGGTGTGCGTGAAGAAAGAAGACAACATCGAGTTATCGTG
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