mRNA_H-canaliculatus_F_contig1034.355.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1034.355.1
Unique NamemRNA_H-canaliculatus_F_contig1034.355.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1034.355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1034contigH-canaliculatus_F_contig1034:6622..7611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-27_000040.1
Exons2
Model size425
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928671.0527186-CDS-H-canaliculatus_F_contig1034:6621..69421622928671.0527186-CDS-H-canaliculatus_F_contig1034:6621..6942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1034 6622..6942 -
1696845521.370001-CDS-H-canaliculatus_F_contig1034:6621..69421696845521.370001-CDS-H-canaliculatus_F_contig1034:6621..6942Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1034 6622..6942 -
1622928671.0693414-CDS-H-canaliculatus_F_contig1034:7509..76111622928671.0693414-CDS-H-canaliculatus_F_contig1034:7509..7611Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1034 7510..7611 -
1696845521.3811936-CDS-H-canaliculatus_F_contig1034:7509..76111696845521.3811936-CDS-H-canaliculatus_F_contig1034:7509..7611Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1034 7510..7611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1034.355.1prot_H-canaliculatus_F_contig1034.355.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1034 6622..7611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1034.355.1

>prot_H-canaliculatus_F_contig1034.355.1 ID=prot_H-canaliculatus_F_contig1034.355.1|Name=mRNA_H-canaliculatus_F_contig1034.355.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=141bp
NASARAGGARGRFLGRERSWDRNRDAVDDIGSFEVEGGSEREEPRQQSEG
RDGRKGGKIDAVADAGNTAATSSQLIAQQQRHYARRPSSATGWSSSSGFA
LSAETRPARLSDRRAISMSCSPARVRRRGASNIVLPANRIE
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mRNA from alignment at H-canaliculatus_F_contig1034:6622..7611-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1034.355.1 ID=mRNA_H-canaliculatus_F_contig1034.355.1|Name=mRNA_H-canaliculatus_F_contig1034.355.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1034:6622..7611- (Hapterophycus canaliculatus Oshoro5f female)
AACGCCTCGGCTCGAGCAGGCGGGGCGAGGGGGCGCTTCTTAGGCCGAGA
AAGATCCTGGGATAGGAATCGCGACGCTGTCGATGATATTGGATCATTTG
AGGTGCGTATCGATGAGATCTTCCTGGGAAGAAGGGCTTGGTGGTAATGA
ACCGGTCATGGGCTTGAACTCCACTCCACTGGTGTCTATGGTAACGTTGT
GGCCAAGGTCGGGTCGAGGGGTGGTTATGCGCCTGAGGCTACCCATGAAT
AAAGTATAATCTAATCCGGGTCAGACGTTACTCAAGAAGAAAGGATATTT
GCTCTGTCTGAAGTTCTTTCTCAGCTCCTGCCTGAGTTTCCTCGGCAAGG
CCTTCATGTTCATCCTCGATGAGTTATTTTTGTGGTTTTGCCAAAAGGTC
ATGGGCCACAGCACGCCTATGTTGCTTTCAGCCTTCATGCCAGGATATAT
TGCGTCCGTTTCCCATGCTTCCGTATACGAATCCGCACATTTCGACGACG
CCTTGGCAAGACTGAACCGTTGAGGTCGTACATCGGGCGAGACCAGCCGT
ACACCATCATTGCCATCGAAACTGGCAAAGCACAAGACGCTATTTTCTCA
ACTTTGAGTATGGACACAAACATGGGAACATTTTATGGTCATGCTCACGA
CACACCGTGGCTTCTGCAGGTCGAGGGTGGATCCGAGCGCGAGGAGCCAC
GACAACAGAGCGAAGGACGAGACGGGAGGAAGGGAGGAAAAATCGATGCT
GTTGCTGATGCTGGCAATACGGCTGCTACCTCAAGCCAGCTCATCGCGCA
ACAACAACGGCACTACGCACGCCGCCCTTCTAGTGCCACGGGCTGGTCTT
CGTCCTCCGGCTTCGCATTGTCGGCGGAAACACGGCCTGCGAGGCTTTCA
GACAGGCGCGCCATTTCGATGAGTTGTTCTCCGGCTCGGGTGCGACGCAG
GGGTGCGAGCAACATAGTGCTGCCGGCCAACAGAATCGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1034:6622..7611-

>mRNA_H-canaliculatus_F_contig1034.355.1 ID=mRNA_H-canaliculatus_F_contig1034.355.1|Name=mRNA_H-canaliculatus_F_contig1034.355.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=846bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1034:6622..7611- (Hapterophycus canaliculatus Oshoro5f female)
AACGCCTCGGCTCGAGCAGGCGGGGCGAGGGGGCGCTTCTTAGGCCGAGA
AAGATCCTGGGATAGGAATCGCGACGCTGTCGATGATATTGGATCATTTG
AGAACGCCTCGGCTCGAGCAGGCGGGGCGAGGGGGCGCTTCTTAGGCCGA
GAAAGATCCTGGGATAGGAATCGCGACGCTGTCGATGATATTGGATCATT
TGAGGTCGAGGGTGGATCCGAGCGCGAGGAGCCACGACAACAGAGCGAAG
GACGAGACGGGAGGAAGGGAGGAAAAATCGATGCTGTTGCTGATGCTGGC
AATACGGCTGCTACCTCAAGCCAGCTCATCGCGCAACAACAACGGCACTA
CGCACGCCGCCCTTCTAGTGCCACGGGCTGGTCTTCGTCCTCCGGCTTCG
CATTGTCGGCGGAAACACGGCCTGCGAGGCTTTCAGACAGGCGCGCCATT
TCGATGAGTTGTTCTCCGGCTCGGGTGCGACGCAGGGGTGCGAGCAACAT
AGTGCTGCCGGCCAACAGAATCGAGGTCGAGGGTGGATCCGAGCGCGAGG
AGCCACGACAACAGAGCGAAGGACGAGACGGGAGGAAGGGAGGAAAAATC
GATGCTGTTGCTGATGCTGGCAATACGGCTGCTACCTCAAGCCAGCTCAT
CGCGCAACAACAACGGCACTACGCACGCCGCCCTTCTAGTGCCACGGGCT
GGTCTTCGTCCTCCGGCTTCGCATTGTCGGCGGAAACACGGCCTGCGAGG
CTTTCAGACAGGCGCGCCATTTCGATGAGTTGTTCTCCGGCTCGGGTGCG
ACGCAGGGGTGCGAGCAACATAGTGCTGCCGGCCAACAGAATCGAG
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