mRNA_H-canaliculatus_F_contig10338.353.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10338.353.1
Unique NamemRNA_H-canaliculatus_F_contig10338.353.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10338.353.1 vs. uniprot
Match: A0A6H5J883_9PHAE (GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J883_9PHAE)

HSP 1 Score: 444 bits (1142), Expect = 3.790e-150
Identity = 219/224 (97.77%), Postives = 222/224 (99.11%), Query Frame = 1 
Query:    7 LNDDGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMHQALALSRVERELRQHKLYRYVMVHTAAFWAKSFMHEFREVCDGQRESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTTLQSLPQLAAPPAVVTNFLDSLCRDDKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 678
            LNDDGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAM+QALALSRVERELRQHKLYRYV+VHTAAFWAKSFMHEFREVCDGQ+ESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTTLQSLPQLA PPAVVTNFLDSLCRD KNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES
Sbjct:  292 LNDDGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMNQALALSRVERELRQHKLYRYVVVHTAAFWAKSFMHEFREVCDGQQESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTTLQSLPQLAGPPAVVTNFLDSLCRDYKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 515
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BLAST of mRNA_H-canaliculatus_F_contig10338.353.1 vs. uniprot
Match: D8LRB5_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB5_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 4.780e-129
Identity = 201/224 (89.73%), Postives = 204/224 (91.07%), Query Frame = 1 
Query:    7 LNDDGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMHQALALSRVERELRQHKLYRYVMVHTAAFWAKSFMHEFREVCDGQRESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTTLQSLPQLAAPPAVVTNFLDSLCRDDKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 678
            +NDDGPGVLILSEFAGSAQSLSGA                  LALSRVERELRQHKLYRYV+VHTAAFWAKSFMHEFREVCDGQ+ESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTTLQSLPQLA PPAVVTNFLDSLCRD KNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES
Sbjct:  493 VNDDGPGVLILSEFAGSAQSLSGA------------------LALSRVERELRQHKLYRYVVVHTAAFWAKSFMHEFREVCDGQQESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTTLQSLPQLAGPPAVVTNFLDSLCRDYKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 698
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10338.353.1 vs. uniprot
Match: A0A835Z8I3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8I3_9STRA)

HSP 1 Score: 363 bits (932), Expect = 7.420e-118
Identity = 177/221 (80.09%), Postives = 191/221 (86.43%), Query Frame = 1 
Query:   16 DGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMHQALALSRVERELRQHKLYRYVMVHTAAFWAKSFMHEFREVCDGQRESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTTLQSLPQLAAPPAVVTNFLDSLCRDDKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 678
            DGPGVLILSEFAGSAQSLSGAIRVNPWNT++LA A+ QAL LSRVERELRQHKLYRYV +HTA FWAKSFM EFREVCD +++   KLPTLPIKEV  AY +AK RLIISDYDGTLT LQSLPQLA PP  VT+ L++LCRD KN LFIISGRERRFMD W G LR GLAAEYGFYYRLP   QWQC+GQ LDL+WK+VV PIMQYFTERTPGTYIENKES
Sbjct:  409 DGPGVLILSEFAGSAQSLSGAIRVNPWNTDQLAGAIKQALTLSRVERELRQHKLYRYVSMHTACFWAKSFMQEFREVCDKRKKGIDKLPTLPIKEVRHAYAEAKRRLIISDYDGTLTQLQSLPQLAGPPPFVTSLLENLCRDPKNTLFIISGRERRFMDRWFGNLRVGLAAEYGFYYRLPNQDQWQCAGQGLDLTWKNVVHPIMQYFTERTPGTYIENKES 629
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10338.353.1 vs. uniprot
Match: K8YXH8_NANGC (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXH8_NANGC)

HSP 1 Score: 307 bits (787), Expect = 5.650e-95
Identity = 146/221 (66.06%), Postives = 178/221 (80.54%), Query Frame = 1 
Query:   16 DGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMHQALALSRVERELRQHKLYRYVMVHTAAFWAKSFMHEFREVCDGQRESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTTLQSLPQLAAPPAVVTNFLDSLCRDDKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 678
            DGPGVL+LSEFAGSAQSLSGAIR+NPWNTEE+ +A+ QAL LSR ERE+RQHKL RYV V+TA+ WAKSF+ E R VC   + +  KLP LP      AY++A+NRLI++DYDGTLT LQS+PQLA P   +TN LDSL +D +N + I+SGRE+RFMDTWLGKL+  LAAEYGFYYR+PE  +WQ    ++D SW+D+VRPI++YFTERTPGTYIE KES
Sbjct:  451 DGPGVLVLSEFAGSAQSLSGAIRINPWNTEEVCHAIQQALTLSRAEREIRQHKLSRYVSVNTASSWAKSFVAELRTVC-ANKPNLSKLPRLPFDLARSAYERARNRLIVADYDGTLTQLQSVPQLATPSPYITNLLDSLSKDPRNTVVIVSGREKRFMDTWLGKLKMALAAEYGFYYRMPEEEEWQTMAPEVDTSWRDIVRPILEYFTERTPGTYIEKKES 670
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BLAST of mRNA_H-canaliculatus_F_contig10338.353.1 vs. uniprot
Match: A0A7S1UK50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK50_9STRA)

HSP 1 Score: 294 bits (753), Expect = 2.720e-92
Identity = 147/221 (66.52%), Postives = 173/221 (78.28%), Query Frame = 1 
Query:   16 DGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMHQALALSRVERELRQHKLYRYVMVHTAAFWAKSFMHEFREVCDGQRESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTTLQSLPQLAAPPAVVTNFLDSLCRDDKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 678
            DGPGVLILSEFAGSAQ LSGA+RVNPWNT+ELAN +  AL+LS  E+ELR  KL RYV +HTA++WA+S + +F E+C  +   T  LP L   +VLEAY+ AK RLIISDYDGTLTTLQSLPQLA P   +T+ LD + RD KN L IISGRERRFMDTWLG+LR GLAAE+G YYRLP    WQ    D+D++WK VVRPIM+YF ERTPGTYIE+K+S
Sbjct:  267 DGPGVLILSEFAGSAQCLSGALRVNPWNTQELANTIASALSLSPREKELRHQKLTRYVKLHTASYWARSLLSDFVEICQTKPHKTG-LPLLQKDDVLEAYRSAKKRLIISDYDGTLTTLQSLPQLATPSHTITSILDVIARDPKNTLLIISGRERRFMDTWLGRLRVGLAAEHGSYYRLPWDVDWQTLCSDVDVTWKKVVRPIMEYFEERTPGTYIEDKDS 486
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BLAST of mRNA_H-canaliculatus_F_contig10338.353.1 vs. uniprot
Match: A0A8J2S9Z6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9Z6_9STRA)

HSP 1 Score: 296 bits (758), Expect = 1.790e-91
Identity = 142/221 (64.25%), Postives = 178/221 (80.54%), Query Frame = 1 
Query:   16 DGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMHQALALSRVERELRQHKLYRYVMVHTAAFWAKSFMHEFREVCDGQRESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTTLQSLPQLAAPPAVVTNFLDSLCRDDKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 678
            +GPG L+LSEFAGSAQSLSGAIRVNPWNT+ELA A+H AL L+RVERELR  KL+RYV  +TA++WA+SF+ EFR+VC+       KLP LP   VL+AY++A  RL+++DYDGTLT +QSLP+LA P  VVT  L +L RD +N ++++SGRERRFM+ WLG+L+ GLAAE+GF +R P + +W   G+DLD SWKDVVRPIMQYF ERTPGTYIE+KES
Sbjct:  503 EGPGALVLSEFAGSAQSLSGAIRVNPWNTDELARAIHDALTLTRVERELRWAKLHRYVSTNTASYWARSFVDEFRDVCEHP-PLLPKLPKLPAGRVLQAYQRASRRLVVTDYDGTLTQMQSLPRLATPAPVVTQLLATLSRDPRNTVYVVSGRERRFMEKWLGRLKVGLAAEFGFCHRAPGSEEWTSLGRDLDTSWKDVVRPIMQYFAERTPGTYIESKES 722
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BLAST of mRNA_H-canaliculatus_F_contig10338.353.1 vs. uniprot
Match: F0Y2I9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2I9_AURAN)

HSP 1 Score: 278 bits (711), Expect = 5.080e-85
Identity = 141/229 (61.57%), Postives = 175/229 (76.42%), Query Frame = 1 
Query:   16 DGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMHQALALSRVERELRQHKLYRYVMVHTAAFWAKSFMHEFREVCDGQRESTRKLPTLPIKEVL------EAYKKAKNRLIISDYDGTLTTLQSLPQLAAPPAVVTNFLDSLCRDDKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQ--WQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 678
            DGPG L+LSEFAGSAQSLSGAIRVNPWNTEELA A+H+AL L+RVERELR  KL+RYV  +TA++WA+SF+ EFR+VC+     + KLP L   E        +   +   RL+++DYDGTLT +QSLPQLA P  VVT  L +L RD +N ++++SGRERRFMD WLGKL+ GLAAE+G+ +R P+  Q  W+  G++LD SWKDVVRPIMQYF ERTPGTYIE+KES
Sbjct:  451 DGPGALVLSEFAGSAQSLSGAIRVNPWNTEELARAIHEALTLTRVERELRWAKLHRYVTTNTASYWARSFVSEFRDVCEHPPLLS-KLPKLNAAEFRSLVGTPQTSGRIPRRLVVTDYDGTLTQIQSLPQLATPAPVVTQLLATLARDTRNTVYVMSGRERRFMDKWLGKLKVGLAAEFGYCHRAPDDEQGVWKSLGRELDTSWKDVVRPIMQYFAERTPGTYIESKES 678
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10338.353.1 vs. uniprot
Match: A0A662XFL2_9STRA (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XFL2_9STRA)

HSP 1 Score: 236 bits (602), Expect = 3.590e-68
Identity = 120/229 (52.40%), Postives = 152/229 (66.38%), Query Frame = 1 
Query:   16 DGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMHQALALSRVERELRQHKLYRYVMVHTAAFWAKSFMHEFREVCDGQRESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTL--------TTLQSLPQLAAPPAVVTNFLDSLCRDDKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 678
            +GPGVLILSEFAGSAQSLSGAIRVNPWNT ++ANA+  ALAL  +ERE RQ  LYRYV  HTA+FW +SF+ +  E       + +KL  LP  EVL AY ++  RL++ DY+GTL         + Q    LAAP  VV   +++L  D KN + ++S  ER  + +WL   R G+ AE G++YRLP    WQ   +D D SWK VVRPIMQYFTERTPG+ I++KES
Sbjct:  631 EGPGVLILSEFAGSAQSLSGAIRVNPWNTSDMANALSYALALPLMEREYRQTNLYRYVKTHTASFWGRSFLSDLEEAVSRPATTVKKLVKLPTVEVLAAYARSSRRLLVLDYEGTLLDDPASTGASSQQRATLAAPKPVVKRLVEALANDPKNTVVLVSAHERSVVGSWLTDRRVGVVAESGYFYRLPNEDTWQVMTEDTDPSWKKVVRPIMQYFTERTPGSRIDSKES 859
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10338.353.1 vs. uniprot
Match: K3W821_GLOUD (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W821_GLOUD)

HSP 1 Score: 234 bits (598), Expect = 5.320e-68
Identity = 118/222 (53.15%), Postives = 151/222 (68.02%), Query Frame = 1 
Query:   16 DGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMHQALALSRVERELRQHKLYRYVMVHTAAFWAKSFMHEFREVCDGQRESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTTLQSLPQLAAPP-AVVTNFLDSLCRDDKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 678
            +GPGVLILSEFAGSAQSLSGAIRVNPWN  ++ANA+  AL L  +ERE RQ  L+RYV  HTA+FW KSF+ E  E    +   T+KL  LP  +V+ AY ++K R+I+ DY+GTL          APP AVV   +++L  D KN + ++SG +R  + +WL   R G+ AE G+ YRLP   +W+   +D+D SWK VVRPIMQYFTERTPG+ IE KES
Sbjct:  527 EGPGVLILSEFAGSAQSLSGAIRVNPWNNTDMANALEYALTLPAIEREYRQSNLHRYVKTHTASFWGKSFLTEL-EFAVSRPSLTKKLVKLPTMDVINAYNRSKKRIIVLDYEGTLLDESHQRSTIAPPKAVVKRIIENLAADKKNTVLLVSGHDRSVIGSWLNDKRIGIVAESGYCYRLPHEDEWETMAEDMDPSWKRVVRPIMQYFTERTPGSRIETKES 747
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10338.353.1 vs. uniprot
Match: D0NRZ0_PHYIT (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=3 Tax=Phytophthora TaxID=4783 RepID=D0NRZ0_PHYIT)

HSP 1 Score: 233 bits (593), Expect = 3.080e-67
Identity = 119/227 (52.42%), Postives = 150/227 (66.08%), Query Frame = 1 
Query:   16 DGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMHQALALSRVERELRQHKLYRYVMVHTAAFWAKSFMHEFREVCDGQRESTRKLPTLPIKEVLEAYKKAKNRLIISDYDGTLTT------LQSLPQLAAPPAVVTNFLDSLCRDDKNRLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLSWKDVVRPIMQYFTERTPGTYIENKES 678
            +GPGVLILSEFAGSAQSLSGAIRVNPWNT ++ANA+  AL L  +ERE RQ  LYRYV  HTA+FW KSF+ +  +     R   +KL  LP  EVL AY ++ +RL++ DY+GTL         Q    +A P   V   +D+L  D KN + ++S  ER  + +WL   R G+ AE G++YRLP   +WQ   +D D SWK VVRPIMQYFTERTPG+ IE+KES
Sbjct:  582 EGPGVLILSEFAGSAQSLSGAIRVNPWNTTDMANALSYALELPLMEREYRQRNLYRYVKTHTASFWGKSFLTDLEDAVSRPRAVVKKLVRLPTIEVLGAYTRSCHRLLVLDYEGTLFDDLTAGPSQQRGSVAPPKPFVKRLIDALANDPKNTVVLVSSHERNVIGSWLTDRRVGVVAESGYFYRLPNEDEWQVMTEDTDPSWKKVVRPIMQYFTERTPGSRIESKES 808
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10338.353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J883_9PHAE3.790e-15097.77GT20 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB5_ECTSI4.780e-12989.73Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A835Z8I3_9STRA7.420e-11880.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8YXH8_NANGC5.650e-9566.06Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
A0A7S1UK50_9STRA2.720e-9266.52Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8J2S9Z6_9STRA1.790e-9164.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y2I9_AURAN5.080e-8561.57Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A662XFL2_9STRA3.590e-6852.40Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
K3W821_GLOUD5.320e-6853.15Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
D0NRZ0_PHYIT3.080e-6752.42Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10338contigH-canaliculatus_F_contig10338:795..4603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.8
Seed ortholog evalue5.7e-73
Seed eggNOG ortholog44056.XP_009034302.1
Preferred nameTPS2
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K01087,ko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003825,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005984,GO:0005991,GO:0005992,GO:0006793,GO:0006796,GO:0006950,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009311,GO:0009312,GO:0009743,GO:0009756,GO:0009790,GO:0009791,GO:0009793,GO:0009832,GO:0009987,GO:0010033,GO:0010154,GO:0010182,GO:0016051,GO:0016311,GO:0016740,GO:0016757,GO:0016758,GO:0016787,GO:0016788,GO:0016791,GO:0022414,GO:0023052,GO:0032501,GO:0032502,GO:0033554,GO:0034637,GO:0035251,GO:0042221,GO:0042546,GO:0042578,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044424,GO:0044464,GO:0046351,GO:0046527,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051301,GO:0051716,GO:0061458,GO:0065007,GO:0070413,GO:0070887,GO:0071310,GO:0071322,GO:0071554,GO:0071669,GO:0071704,GO:0071840,GO:1901576,GO:1901700,GO:1901701
EggNOG free text desc.trehalose biosynthetic process
EggNOG OGsCOG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTrehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase
Ec32 orthologEc-06_003140.1
Exons4
Model size684
Cds size684
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10338.353.1prot_H-canaliculatus_F_contig10338.353.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10338 795..4603 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928670.9704778-CDS-H-canaliculatus_F_contig10338:794..10051622928670.9704778-CDS-H-canaliculatus_F_contig10338:794..1005Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10338 795..1005 -
1696845521.3116624-CDS-H-canaliculatus_F_contig10338:794..10051696845521.3116624-CDS-H-canaliculatus_F_contig10338:794..1005Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10338 795..1005 -
1622928670.9834826-CDS-H-canaliculatus_F_contig10338:1667..18401622928670.9834826-CDS-H-canaliculatus_F_contig10338:1667..1840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10338 1668..1840 -
1696845521.3328464-CDS-H-canaliculatus_F_contig10338:1667..18401696845521.3328464-CDS-H-canaliculatus_F_contig10338:1667..1840Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10338 1668..1840 -
1622928670.999217-CDS-H-canaliculatus_F_contig10338:3379..34971622928670.999217-CDS-H-canaliculatus_F_contig10338:3379..3497Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10338 3380..3497 -
1696845521.341668-CDS-H-canaliculatus_F_contig10338:3379..34971696845521.341668-CDS-H-canaliculatus_F_contig10338:3379..3497Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10338 3380..3497 -
1622928671.0115533-CDS-H-canaliculatus_F_contig10338:4421..46031622928671.0115533-CDS-H-canaliculatus_F_contig10338:4421..4603Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10338 4422..4603 -
1696845521.360203-CDS-H-canaliculatus_F_contig10338:4421..46031696845521.360203-CDS-H-canaliculatus_F_contig10338:4421..4603Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10338 4422..4603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10338.353.1

>prot_H-canaliculatus_F_contig10338.353.1 ID=prot_H-canaliculatus_F_contig10338.353.1|Name=mRNA_H-canaliculatus_F_contig10338.353.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=228bp
LGLNDDGPGVLILSEFAGSAQSLSGAIRVNPWNTEELANAMHQALALSRV
ERELRQHKLYRYVMVHTAAFWAKSFMHEFREVCDGQRESTRKLPTLPIKE
VLEAYKKAKNRLIISDYDGTLTTLQSLPQLAAPPAVVTNFLDSLCRDDKN
RLFIISGRERRFMDTWLGKLRAGLAAEYGFYYRLPEATQWQCSGQDLDLS
WKDVVRPIMQYFTERTPGTYIENKESR*
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mRNA from alignment at H-canaliculatus_F_contig10338:795..4603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10338.353.1 ID=mRNA_H-canaliculatus_F_contig10338.353.1|Name=mRNA_H-canaliculatus_F_contig10338.353.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3809bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10338:795..4603- (Hapterophycus canaliculatus Oshoro5f female)
TTGGGTCTCAACGACGATGGACCGGGCGTGCTCATCCTCAGCGAGTTCGC
CGGCAGCGCGCAGTCCCTGAGCGGCGCCATCCGCGTGAATCCGTGGAACA
CCGAAGAGCTCGCCAACGCTATGCACCAGGCCCTGGCGCTCAGCCGCGTG
GAGAGGGAGCTCCGGCAGCACAAGCTCTACCGGTGAGTGCGTCCTAGTCC
TGGGGTGTGGTCGGTTCCCGCTCCTGCTGCTTGCCCGAGTCGTTTGGCCG
TTGACCGTTTCCTTTTTCTGAGGGGTGCGTGCCTCCAACGGCAGCGGGGC
GCTCTCGACGCCTCTGCCATATCTTAACCATCCAGGCCGAGCAGCATCGT
TTCCTTTTTCTGGGTGGCGTTTTTTCTGAACGGTGTATGGTGTGGATCTC
CCAGAGCAGTGGGGCGCTCTCGACGTTTCTGCCGTGTCTCATGAAAAAAA
ATCCTTGCTTGTCCCATGTCCTTCTTGGCGACGACCGCGTGACCAGCGTC
CATCTCGCAGCGCAAAGGTTGTTCCGCGACTTGAGGTCCAGTTCACCACA
CTGATTTACGGCAAATCAATTGTCTTTCCTTTGTGCGTTGCTCCGGGGTC
ATCGGTTCTTCCCTTGATCTTGATGGTTCGCACTCCCGCTTGACGCGGGA
TAGACTCTTGTCATGCGAGGGTGTACTAGTTTCCGAGGCGAAGCGGTGCG
ATCGTCTTATTTGTTTGCCGGTCAAGCGAAGGGGTTCCGAGTCGCCGTGC
GTCTGGCATCGGCTCCGTCCCGCCATCGCTGTACGAGGCCCCCTGCTGGC
GCGGTACCCCGATTGCAAGTCAGGCTGCGCCAAACGCACCAGCAATGGCA
CGAATGATCCCGAGCGTCCACGTGTCGCGGCAACGTAACAAAAGCCACAC
CGGCTGAACCACAATTTTAACGCAACAGGGGCGCCGTCGCTGTCACCCCC
GGTCCCTAACCCCCCTCTCTCTCTTCCCCCCCCCCCGCTCCCCCCCCCCC
CCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCACCCCACCCC
ACAACATACACGCCCTTTCTTGTCCCGCTCTCCCGTACTCGTGGCGTGCG
TCGAAGGTACGTGATGGTTCACACGGCGGCCTTCTGGGCGAAGTCCTTCA
TGCACGAGTTCCGAGAGGTGTGCGACGGGCAGAGGGAGTCGACCCGAAAG
CTCCCGACGCTGCCCATCAAGGAGGTCAGTTGCGTCCGTCCGCCCGTCCG
CTCGTTGGTTGGTTTGTGGTGGACCCTTTGTGTGTGTGTACGTGTGTGTG
TGTCGATGGTGGTGGTTTGGTTTGGTTTGGTTTGCCTGGTGCTGCCTGTC
GGTGCTCTCGTTTTCCCGGTCGCTCTCGGCGCGGACGTAACGGGAGCGGC
TTGTCGCTTAACACGCGCCCCTCGACCACAAGGAAGCAAGTGCCCGTCAC
GTGCGCGTGTGTGCGTGTGTGGCCGGCCAGCCGGCCGGCCCAGCGCAGGC
ATGGGCGATGCAGAAAAGAAAAGAAAAGAGAGGTCGAGCGTGTGGTACCA
ATCTTGGGGACGTGTGAGGGATGGATCGTCTTCAGGAGGCCATGGGCCGT
CCCAGGATTGTTTTGTCGGGGATCCGCGACGTCAATCGTGCACTGATGTG
TGGCGATCGTGCTACGATGTTGTTACGGCCAAGTCTGTGGGGAAGGCGAG
CGCGTTCACGACGCGAGAAAGTAGGCATGCCGGTTTTCAGCTGACCGTGA
GTCTTCGCCCGCCGCCTGTGCCAGTGCTCATCCCCGGGAAGGGAGGAACG
AGAGATGCGAACACACACACACACACACACACACACACACACACACACAA
AAAACGCAGACGAACGTTTTTTTTGCTTGTGTGCCTCGGGCCTTTCGAGG
GGATGATTGGGGAAGAGGTTGCGCCAATACGTGTGGGTGGATGCGGAAGC
TGCTGCTGCTGCTGCTGATGTGTGGGTCCTGAGAGGGTGCGCCTTTGTAT
AGACCGTGGAGATGACTGTGCTTCCGGAGAGGACAGAAAGCGGCGGCGAC
CTTTGGGGAAGGGTGACCTAGGTCACGACCAGGCTCGATCGCTCGCTTCA
GACCTGACTCGAGACACAGGATATCGGCGGGTCGAGCGCTACGCAGAGTA
GAAGAGGGGAAACACGGAAATGAATAGGCACGACAAATCAGAGGAGACGC
CGGTGCTGTGCTCAAAGCGAAGTGGAAAGAGACAGACAAGTCGAACACTC
TCGGATCCAAGTTCAAGGGAAAGGGAAAAAAAAGTATAACACTCTCGGAC
CCAAGTAGGCACGCATCTGGCGGCGTTATCGCGAGGGCTCAACCGCTGAT
CGACGAGCCGACCGAAAATTCGTGTTTGTGCCCCGGAATGTCCATGTAGG
CCAAGCCCGGCCTTTACCGACGCGGCCTGTTTGAGACGATGGCGGTGCGT
CAGACACTCGATCGTCTCCTCCCCCCCAGAAGATGATTCGCCGGGCCTAA
CACCAAGTCGCGAACAGCGCGAAAATCTCTTGTTTCGAGACATGCTTTAT
CGTCTCCACCCACCCGCCTGTGTCCTCGTCTGTAGGACAGCGGTTCCCAA
CGAAGGACCCAACCCGGAACAGGTGCGGGTCCAATCTGGAGCCCGCCAGG
GTGCCGAATTCGTCCTTCTCCGTTAAGGAAGTCACCTGCGCTCACTCGTC
CTCTCTCGTCGAACCCGCCAACGGGGGCCGGGGGTTGGTATGTGTGGGGG
GGGTATCAAACAGGTCCTGGAGGCGTACAAGAAGGCCAAGAATCGCCTCA
TCATCAGCGACTACGATGGTACCCTCACGACCCTGCAGTCCCTGCCGCAG
CTGGCGGCGCCCCCCGCGGTGGTGACGAACTTCCTTGACTCGCTGTGCCG
GGACGATAAGAACAGGCTCTTCATTATCTCGGGGAGGTATGTCGTCACCG
GGGGGGGGACACGCGGATGGGTCGCCGCGGGAAGGTTGCGCGTGTAGCGG
GAGGGGGAGGTAGCTGCTGCTGCGACGGGGAGTTCCGGCCGCCTGTTCGG
AGTCGGGGCGCTGGAGGAGATGGGAATGAGAGATGGGTTATGCCTGTGCT
TAGTGGAGCGTCTCAGAGCGCTAGATGCAGTAGTAAGTAAGCCTCCAGAA
AGTGGTGTCACCGAGACGTGCCGGACTGGACGAAACTTGGGAGGGCCTGG
AGTTCGCCTGTTTTTGAACGGGGTTAGGACGCACAGGAAATGCAGTTTCC
AACAGCGTCAGGTGTAGATCATAGATGTTGCCCTCCTGGTCGTTGTCGTC
GTCGTCGTGCCCGTCTCATCAGCGCCTGATGGCTGTGACGCTTGGGTGGA
ATGGTTTGTGCCTAGATCGTTCTTGCGCCTGCTCCTCCTCTCGTTGGCCA
CGCTCGGCCCCCTTGTCCAACGATTCCACCCTTTTTTCGCTTCTCTTTTC
GCGATTGGTTGGTTTTGGTTCTGGCGGGGGCGAAAAAAGACGAGTAAGAC
AGGCATCGCAACCAGATTAGATACCTAGGTCGATCCCACCCAGAGCCAAC
GGAACGACGACCACCACCACCACTACCACAACAACCGGTCCTTGACAGGG
AGCGGAGGTTTATGGACACCTGGCTAGGCAAGCTTCGCGCAGGGCTTGCC
GCGGAGTACGGCTTCTACTACCGCCTTCCCGAGGCCACACAGTGGCAGTG
CAGCGGGCAGGATCTTGACCTGAGCTGGAAGGATGTAGTTCGGCCGATCA
TGCAGTACTTCACCGAGCGCACGCCAGGCACGTATATCGAGAACAAGGAG
TCGAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10338:795..4603-

>mRNA_H-canaliculatus_F_contig10338.353.1 ID=mRNA_H-canaliculatus_F_contig10338.353.1|Name=mRNA_H-canaliculatus_F_contig10338.353.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1368bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10338:795..4603- (Hapterophycus canaliculatus Oshoro5f female)
TTGGGTCTCAACGACGATGGACCGGGCGTGCTCATCCTCAGCGAGTTCGC
CGGCAGCGCGCAGTCCCTGAGCGGCGCCATCCGCGTGAATCCGTGGAACA
CCGAAGAGCTCGCCAACGCTATGCACCAGGCCCTGGCGCTCAGCCGCGTG
GAGAGGGAGCTCCGGCAGCACAAGCTCTACCGTTGGGTCTCAACGACGAT
GGACCGGGCGTGCTCATCCTCAGCGAGTTCGCCGGCAGCGCGCAGTCCCT
GAGCGGCGCCATCCGCGTGAATCCGTGGAACACCGAAGAGCTCGCCAACG
CTATGCACCAGGCCCTGGCGCTCAGCCGCGTGGAGAGGGAGCTCCGGCAG
CACAAGCTCTACCGGTACGTGATGGTTCACACGGCGGCCTTCTGGGCGAA
GTCCTTCATGCACGAGTTCCGAGAGGTGTGCGACGGGCAGAGGGAGTCGA
CCCGAAAGCTCCCGACGCTGCCCATCAAGGAGGTACGTGATGGTTCACAC
GGCGGCCTTCTGGGCGAAGTCCTTCATGCACGAGTTCCGAGAGGTGTGCG
ACGGGCAGAGGGAGTCGACCCGAAAGCTCCCGACGCTGCCCATCAAGGAG
GTCCTGGAGGCGTACAAGAAGGCCAAGAATCGCCTCATCATCAGCGACTA
CGATGGTACCCTCACGACCCTGCAGTCCCTGCCGCAGCTGGCGGCGCCCC
CCGCGGTGGTGACGAACTTCCTTGACTCGCTGTGCCGGGACGATAAGAAC
AGGCTCTTCATTATCTCGGGGAGGTCCTGGAGGCGTACAAGAAGGCCAAG
AATCGCCTCATCATCAGCGACTACGATGGTACCCTCACGACCCTGCAGTC
CCTGCCGCAGCTGGCGGCGCCCCCCGCGGTGGTGACGAACTTCCTTGACT
CGCTGTGCCGGGACGATAAGAACAGGCTCTTCATTATCTCGGGGAGGGAG
CGGAGGTTTATGGACACCTGGCTAGGCAAGCTTCGCGCAGGGCTTGCCGC
GGAGTACGGCTTCTACTACCGCCTTCCCGAGGCCACACAGTGGCAGTGCA
GCGGGCAGGATCTTGACCTGAGCTGGAAGGATGTAGTTCGGCCGATCATG
CAGTACTTCACCGAGCGCACGCCAGGCACGTATATCGAGAACAAGGAGTC
GAGGTGAGGAGCGGAGGTTTATGGACACCTGGCTAGGCAAGCTTCGCGCA
GGGCTTGCCGCGGAGTACGGCTTCTACTACCGCCTTCCCGAGGCCACACA
GTGGCAGTGCAGCGGGCAGGATCTTGACCTGAGCTGGAAGGATGTAGTTC
GGCCGATCATGCAGTACTTCACCGAGCGCACGCCAGGCACGTATATCGAG
AACAAGGAGTCGAGGTGA
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