mRNA_H-canaliculatus_F_contig10335.349.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10335.349.1
Unique NamemRNA_H-canaliculatus_F_contig10335.349.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10335.349.1 vs. uniprot
Match: D8LSN2_ECTSI (Conserved oligomeric Golgi complex subunit 5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN2_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 7.780e-34
Identity = 71/82 (86.59%), Postives = 77/82 (93.90%), Query Frame = 3 
Query:    3 SVGGVTELSRRTDEFRDGVRELRRSFARVQREVSEPHEAIRLRTQQLKNLHAATRLLKRALRFLAALRRLRAQEGALGLDTA 248
            SVGGV+ELSRRT+EFRDGVRELRRSFARVQREVSEPHEA+R+RTQQLKNLH ATRLLKRALRFL+ALRRLR QE  LGL+ A
Sbjct:   94 SVGGVSELSRRTEEFRDGVRELRRSFARVQREVSEPHEAVRVRTQQLKNLHDATRLLKRALRFLSALRRLRGQEDVLGLEAA 175
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BLAST of mRNA_H-canaliculatus_F_contig10335.349.1 vs. uniprot
Match: A0A6H5JJJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 9.260e-8
Identity = 26/28 (92.86%), Postives = 28/28 (100.00%), Query Frame = 3 
Query:    3 SVGGVTELSRRTDEFRDGVRELRRSFAR 86
            SVGGV+ELSRRT+EFRDGVRELRRSFAR
Sbjct:   26 SVGGVSELSRRTEEFRDGVRELRRSFAR 53
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10335.349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSN2_ECTSI7.780e-3486.59Conserved oligomeric Golgi complex subunit 5 n=2 T... [more]
A0A6H5JJJ4_9PHAE9.260e-892.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10335contigH-canaliculatus_F_contig10335:2696..3725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928670.5853488-CDS-H-canaliculatus_F_contig10335:2695..27811622928670.5853488-CDS-H-canaliculatus_F_contig10335:2695..2781Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10335 2696..2781 +
1696845521.171915-CDS-H-canaliculatus_F_contig10335:2695..27811696845521.171915-CDS-H-canaliculatus_F_contig10335:2695..2781Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10335 2696..2781 +
1622928670.6004689-CDS-H-canaliculatus_F_contig10335:3520..37251622928670.6004689-CDS-H-canaliculatus_F_contig10335:3520..3725Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10335 3521..3725 +
1696845521.182339-CDS-H-canaliculatus_F_contig10335:3520..37251696845521.182339-CDS-H-canaliculatus_F_contig10335:3520..3725Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10335 3521..3725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10335.349.1prot_H-canaliculatus_F_contig10335.349.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10335 2696..3725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10335.349.1

>prot_H-canaliculatus_F_contig10335.349.1 ID=prot_H-canaliculatus_F_contig10335.349.1|Name=mRNA_H-canaliculatus_F_contig10335.349.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
AASAASRSSPAARTSSGTGCASCAALSRGSSGKSPSPTRPSDSAPSSSRT
SMPPPACSSEPCDFSPPCEGFGRRKAPSGWTPPQPLERAARPGRRGG
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mRNA from alignment at H-canaliculatus_F_contig10335:2696..3725+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10335.349.1 ID=mRNA_H-canaliculatus_F_contig10335.349.1|Name=mRNA_H-canaliculatus_F_contig10335.349.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1030bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10335:2696..3725+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGCGTCGGCGGCGTCACGGAGCTCTCCCGCCGCACGGACGAGTTCAGG
GACGGGGTGCGCGAGCTGCGCCGCTCTTTCGCGAGGGTATGTCGGCGCTT
GCGCCCACCTCTGCATTGAGGCCGTCGTCGTCGTCGTCGTCGTTGGTGCT
GCTGCTGCTGCTGGAGGTTTTCGATAGTGGCGGTGTTCGTCTTCTTTCGG
TTCGAGTTTGGGGTTAGGGTTCGGCCTGTTAGTGTTCGCACTCTTGTCGA
CAGCTGCGGCGTTTGTCTTCTGGTTTGGTTTGGCGCTGGGATTCGACAGG
AAGGTGCTCGTGCTTTTGTCTTGTCTTCGTGCGCGCGGTTTTGCGTCAGC
CGGAGGGTGGCGGCGCATCGCAGCGCAGTGCAACGCGCTTTGCGTAGGCA
CGCGCACCACGTGCGTCGGTGTTCGTTATGGGTGTGCGCGTGTGTGAGAG
TGTGCGCGTGCTCTTGCGCCTTCCGATTTTCGCGCGCGAAAACTTCTCGT
CTGTGGTGAGCTTTTTCGGGGGCGGCGAGTGAAGCGAGAACGGGGCAGAG
TCGAAGAAAGCGTTGGGGCCTCGGCTGCGCGTCTCCCGTAGCTGCTCGGT
CGTGCCTGCTCACGGTGCACCTTCGTCTCACGTCCGCACCCGCGTGGTGA
CGATCTGGACGACCCTGTTCGTTGGACTGACTGGTTGGTCCCGCCGTCCG
TTCGTCTGTGTGGCGCAACCAGCACCACCATCGCTAGCACCGACGACACC
GCGTAGCAAACATGCAAACAGCGAAAAACGGGCGTCTAGCAACGACGACA
ACCACGACAACTCATGCGAAAACAGGTCCAGCGGGAAGTCTCCGAGCCCC
ACGAGGCCATCCGACTCCGCACCCAGCAGCTCAAGAACCTCCATGCCGCC
ACCCGCCTGCTCAAGCGAGCCCTGCGATTTCTCGCCGCCCTGCGAAGGCT
TCGGGCGCAGGAAGGCGCCCTCGGGTTGGACACCGCCGCAGCCGCTGGAG
CGGGCGGCGCGGCCGGGACGGCGGGGAGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10335:2696..3725+

>mRNA_H-canaliculatus_F_contig10335.349.1 ID=mRNA_H-canaliculatus_F_contig10335.349.1|Name=mRNA_H-canaliculatus_F_contig10335.349.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10335:2696..3725+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGCGTCGGCGGCGTCACGGAGCTCTCCCGCCGCACGGACGAGTTCAGG
GACGGGGTGCGCGAGCTGCGCCGCTCTTTCGCGAGGGCAGCGTCGGCGGC
GTCACGGAGCTCTCCCGCCGCACGGACGAGTTCAGGGACGGGGTGCGCGA
GCTGCGCCGCTCTTTCGCGAGGGTCCAGCGGGAAGTCTCCGAGCCCCACG
AGGCCATCCGACTCCGCACCCAGCAGCTCAAGAACCTCCATGCCGCCACC
CGCCTGCTCAAGCGAGCCCTGCGATTTCTCGCCGCCCTGCGAAGGCTTCG
GGCGCAGGAAGGCGCCCTCGGGTTGGACACCGCCGCAGCCGCTGGAGCGG
GCGGCGCGGCCGGGACGGCGGGGAGGGGTCCAGCGGGAAGTCTCCGAGCC
CCACGAGGCCATCCGACTCCGCACCCAGCAGCTCAAGAACCTCCATGCCG
CCACCCGCCTGCTCAAGCGAGCCCTGCGATTTCTCGCCGCCCTGCGAAGG
CTTCGGGCGCAGGAAGGCGCCCTCGGGTTGGACACCGCCGCAGCCGCTGG
AGCGGGCGGCGCGGCCGGGACGGCGGGGAGGG
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