mRNA_H-canaliculatus_F_contig10335.348.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10335.348.1
Unique NamemRNA_H-canaliculatus_F_contig10335.348.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10335.348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10335contigH-canaliculatus_F_contig10335:1341..1625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002295.1
Exons1
Model size287
Cds size207
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928670.6479342-UTR-H-canaliculatus_F_contig10335:1340..14181622928670.6479342-UTR-H-canaliculatus_F_contig10335:1340..1418Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10335 1341..1418 +
1696845521.1973977-UTR-H-canaliculatus_F_contig10335:1340..14181696845521.1973977-UTR-H-canaliculatus_F_contig10335:1340..1418Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10335 1341..1418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928670.663915-CDS-H-canaliculatus_F_contig10335:1418..16251622928670.663915-CDS-H-canaliculatus_F_contig10335:1418..1625Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10335 1419..1625 +
1696845521.2199621-CDS-H-canaliculatus_F_contig10335:1418..16251696845521.2199621-CDS-H-canaliculatus_F_contig10335:1418..1625Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10335 1419..1625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10335.348.1prot_H-canaliculatus_F_contig10335.348.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10335 1419..1625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10335.348.1

>prot_H-canaliculatus_F_contig10335.348.1 ID=prot_H-canaliculatus_F_contig10335.348.1|Name=mRNA_H-canaliculatus_F_contig10335.348.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=69bp
MATSASEILGRIENDAVFAGFLEAGFDPAQFASKIVRADVGKASAASGSG
AVGAAPVLLLQEGGDGIGS
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mRNA from alignment at H-canaliculatus_F_contig10335:1341..1625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10335.348.1 ID=mRNA_H-canaliculatus_F_contig10335.348.1|Name=mRNA_H-canaliculatus_F_contig10335.348.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=285bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10335:1341..1625+ (Hapterophycus canaliculatus Oshoro5f female)
GAGAGAACAAACCAGAAATTAGGCAGCTGGAGGGCCTGTGGAGCCAGCCG
CGCGGCAAGAAACTCAAGACTCTGAGCAATGGCGACCAGCGCCTCCGAAA
TTCTCGGGCGCATCGAGAACGACGCCGTTTTCGCCGGCTTCCTAGAAGCT
GGTTTTGATCCAGCCCAGTTTGCGTCGAAAATTGTGCGGGCTGATGTGGG
GAAGGCAAGCGCTGCCTCCGGGAGCGGAGCTGTCGGTGCCGCGCCGGTGC
TGCTGCTGCAAGAGGGTGGGGATGGAATCGGCAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10335:1341..1625+

>mRNA_H-canaliculatus_F_contig10335.348.1 ID=mRNA_H-canaliculatus_F_contig10335.348.1|Name=mRNA_H-canaliculatus_F_contig10335.348.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10335:1341..1625+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGACCAGCGCCTCCGAAATTCTCGGGCGCATCGAGAACGACGCCGT
TTTCGCCGGCTTCCTAGAAGCTGGTTTTGATCCAGCCCAGTTTGCGTCGA
AAATTGTGCGGGCTGATGTGGGGAAGGCAAGCGCTGCCTCCGGGAGCGGA
GCTGTCGGTGCCGCGCCGGTGCTGCTGCTGCAAGAGGGTGGGGATGGAAT
CGGCAGCATGGCGACCAGCGCCTCCGAAATTCTCGGGCGCATCGAGAACG
ACGCCGTTTTCGCCGGCTTCCTAGAAGCTGGTTTTGATCCAGCCCAGTTT
GCGTCGAAAATTGTGCGGGCTGATGTGGGGAAGGCAAGCGCTGCCTCCGG
GAGCGGAGCTGTCGGTGCCGCGCCGGTGCTGCTGCTGCAAGAGGGTGGGG
ATGGAATCGGCAGC
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