mRNA_H-canaliculatus_F_contig10304.323.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10304.323.1
Unique NamemRNA_H-canaliculatus_F_contig10304.323.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10304.323.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.040e-14
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = -1 
Query:  141 YRSWHTGEDG-RIVKDRENGIGEGELQSMHHAWQASRRLHSQRRGSVEGTK-------RMEIMSVDTDVWVAALMVYAVHESTR 368
            Y+SW+   DG  I ++++NG+GEGELQ++HH +Q   +  S R GS EG +       R+E++SVDTDVWVAAL+ YA H  TR
Sbjct:  447 YKSWYNDVDGAEIPEEKDNGLGEGELQALHHVYQVCLQQQS-REGSREGQEAGVREPVRVEVVSVDTDVWVAALLAYAAHPWTR 529
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BLAST of mRNA_H-canaliculatus_F_contig10304.323.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.120e-14
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = -1 
Query:  141 YRSWHTGEDG-RIVKDRENGIGEGELQSMHHAWQASRRLHSQRRGSVEGTK-------RMEIMSVDTDVWVAALMVYAVHESTR 368
            Y+SW+   DG  I ++++NG+GEGELQ++HH +Q   +  S R GS EG +       R+E++SVDTDVWVAAL+ YA H  TR
Sbjct:  941 YKSWYNDVDGAEIPEEKDNGLGEGELQALHHVYQVCLQQQS-REGSREGQEAGVREPVRVEVVSVDTDVWVAALLAYAAHPWTR 1023
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BLAST of mRNA_H-canaliculatus_F_contig10304.323.1 vs. uniprot
Match: A0A6H5KRV8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV8_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 9.830e-11
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = -1 
Query:  141 YRSWHTGEDGRIVKDRENGIGEGELQSMHHAWQASRRLHSQR-------RGSV-----EGTKRMEIMSVDTDVWVAALMVYAVHESTR 368
            Y SW+  ++  I+    NGIGEGELQ++HHA+   +     R        G V     E    +E++SVDTDVW+AAL+ YAVH STR
Sbjct:  838 YLSWYNTKELDIILLEANGIGEGELQALHHAYMTGKNNKESRGQGGEVREGGVVVPTSEDPVTVEVVSVDTDVWMAALLAYAVHPSTR 925
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10304.323.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 8.310e-10
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = -1 
Query:  141 YRSWHTGEDGRIVKDRENGIGEGELQSMHHAWQASRRLH--------SQRRGSVEGTK-----RMEIMSVDTDVWVAALMVYAVHESTR 368
            ++SWH  +D  I+ D  NGIGEGELQ++HHA+   R           S    + EG       R+E++S+  DVWVAAL+ YA++   R
Sbjct:  224 FKSWHNDKDSLIIGDEGNGIGEGELQALHHAYLVGRTAGPLTGEGGGSSSENNQEGQGETPPVRVEVVSIHRDVWVAALLAYALYPHIR 312
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10304.323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JBA3_9PHAE3.040e-1448.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE3.120e-1448.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRV8_9PHAE9.830e-1143.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KUZ3_9PHAE8.310e-1039.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10304contigH-canaliculatus_F_contig10304:1357..4423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size369
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10304.323.1prot_H-canaliculatus_F_contig10304.323.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10304 1437..4423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928667.2121546-UTR-H-canaliculatus_F_contig10304:1356..14361622928667.2121546-UTR-H-canaliculatus_F_contig10304:1356..1436Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10304 1357..1436 +
1696845519.6090894-UTR-H-canaliculatus_F_contig10304:1356..14361696845519.6090894-UTR-H-canaliculatus_F_contig10304:1356..1436Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10304 1357..1436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928667.22216-CDS-H-canaliculatus_F_contig10304:1436..14621622928667.22216-CDS-H-canaliculatus_F_contig10304:1436..1462Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10304 1437..1462 +
1696845519.6178465-CDS-H-canaliculatus_F_contig10304:1436..14621696845519.6178465-CDS-H-canaliculatus_F_contig10304:1436..1462Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10304 1437..1462 +
1622928667.2316248-CDS-H-canaliculatus_F_contig10304:4161..44231622928667.2316248-CDS-H-canaliculatus_F_contig10304:4161..4423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10304 4162..4423 +
1696845519.6265523-CDS-H-canaliculatus_F_contig10304:4161..44231696845519.6265523-CDS-H-canaliculatus_F_contig10304:4161..4423Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10304 4162..4423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10304.323.1

>prot_H-canaliculatus_F_contig10304.323.1 ID=prot_H-canaliculatus_F_contig10304.323.1|Name=mRNA_H-canaliculatus_F_contig10304.323.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=96bp
MVGHISRRGPRCCRAIMRTFSCRFVHGVHHKRRNPHVRVHRHDLHPFGAL
HTAPALRVQSARGLPGVMHRLEFPFPDAVLPVLDNASVLTGVPRSI
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mRNA from alignment at H-canaliculatus_F_contig10304:1357..4423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10304.323.1 ID=mRNA_H-canaliculatus_F_contig10304.323.1|Name=mRNA_H-canaliculatus_F_contig10304.323.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3067bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10304:1357..4423+ (Hapterophycus canaliculatus Oshoro5f female)
GTCTCGATGTACTCCGGCCTTGTGGCTGTGCGCGTCCGAGGCCAGGACGT
CGTCGTCCACCGCGATGATGAGCTGGCGCCATGGTCGGACACATTTCGAG
GCGCGGGTAGGAGTCGAAAGGCGAGGAAGATCGGCGCGCGAGCGTTCGGA
ACGGACAACGGGCGAGCGTCAGTCGCATATCGCGTGGTCTTTTTCGATAA
CAACACTCGACAACAAGGAAGGAATTCAGTACTTTTTCTTGGAAGCGTCT
CACCAGGCGTGTCCCAAGAGGATTGTGCTGAATCCCATGCAGTGAGTATT
CAGTGCGCCTTTTCAGGAAAAGGAGTCGACAACACCGAAGGAATACCCTC
CTCTGAGACAGAGTGCATCGATTCAGGGGGATTGTATTGAACTCCTTCCA
GCGAGGGTTCAGCATGGTATAATTTTGTTTGGCGTGTTACATGAGAAGGC
TGATGGGCGATATATGCATAAGGTCAGTGCGTCTCCTTGCTTCGACGCTC
TTCGCAACCGCTAACATGGTTGCTGTGTTTTTGCATTCTCACCTTGTCGA
CGGTGTTCACACCATTCTCCGAGGAAACAAGACAGAGATGGAATTCTCTG
ACGTCACCCAGGCACGAAATTCAGTGTACTCCTCGGCAAGGCTTTTTTGG
GCGGATGGAAAACGAAGCGATAATCCACTGTGACGGTAATTTTCATACGG
TAAACGGTATTTGTGTTTTCGGCGGTATTGACGTGCAACGAACGTAGAAC
AAAAATATCGCGGTAACTGTTCGACGGCAATACAACATGGCGGTATGTTC
TCGGCGGTAAACGGTTTTCCAATTTGGGGCGGTGTCGCAAAGGGTAAACC
AACATCTGACGATAACTTTTCGGCGGTAAACGGTGTTCGAATGTTATACG
GTGCATGTCGTAAACGGTAAACAAGACACTGACGGTAATTTTAAAGTTTC
GGCGGTAAACGGTACGCTTGACGGTGACGCATACGGTATACATCACAGGA
ACGCCGCAGCAGAAACATTCACCATGCTGTCTGTGGCGTTGGACCTCGAT
AAGCAATGATGAAACATGAAGGGGCCAGCGAGAAATACGCCAGTGTGCCT
CTTCTGCCGCACGCACCGTCTCCATGCCCCAAAACGTTTTTCACGTATAC
CGGTATATTCTCCATATTCGAGGTAAAGCGCTACGAGCAGAAAAAATATC
GCGCGAAAAACAGAAACTAATTGTTGGACGAAATGAAAGGTATGTACGCG
AACCCACAACAGGAAGGACACAACAACGACAACAACAACAACAACAACAA
CAACGACAACAACAACAACAACAGAAGATCACAAAGAAACGCGCGCATTT
TTTGTCTTTTTCTCAAAAAAAGGTACGAGCAGTGCGCCAAAAATGGAAAA
AGAAGGACGGACATTACACCGGCTGCGCGGTAAGCGCAGGGACAGGCCGC
ATTCCGGAGACTACTCCATACATCTACAACGTAAGGTCAATGTCGTCCAT
TTTTTTACTTACTCTCCTGTGCCGCCACGGATTTCCTTGCACATTTGACT
GCCATTGCTCGTGCCAGCTCGACATCAGCGTTCCCCTCAAGAAATGTCCT
ATTCAGCCGAATAAACGTCATGCGCTCGACCTTGCTTGCAAGCGTAACAC
CCGGGTGTCATTCTGTACAAATCGGAAAACAAAGGCTATCACGTAATATA
CCATACCATACTGGTATAATGTAACGTCATAGCCAGAACGTCTTCGCCTG
AACTGATCCCTGCCAAATCAAATTCTTCATCGTCGCTCAGCAAGTCGCAA
GTATCCCCCTGCTCCGACCCGCGATCTAAGCGCTCTACCTCTGTCGGTGA
ATCCTTCTGGGGCAGATCAGCTATGCTCTCCCCCCTTCGTCCCTGCCGGA
GCGTATCATCACCCCCCTCTGTGGTCACGTGCAAACCAGAGGCGTTGTCG
TTTGGCCCGGTCGTGACTTGTTTCGGCCCGGCTCTCCTGCAGACAGAGGA
GCGATTGCACATCGGTGAGCAGAGCCCTAATTCTACTTTTCTGCAGACAC
GACTCTGGCATCGTTTAGTCCCATTGTTGGCCTTCGTGGGAAGGCATCTG
CATTTGACAACAGCTATTCCCTGGCCAGGTTTCACGGAGACCCACGTCGA
TCAGCGCGTGTGCATCAACGCGCATCCGTCGTCTTGTCCTTGATGTACCC
CTTCACATTCGAATCTGGGATTGGGATCGGATGCTGGCCCTCCTCGAGGA
ACGTCGTCAACCAGTACGCCAACATCCAAATCAGTCGTTTCCCTTGGAGG
TCCGTCACGTCGTACTCCGGGGCTTGGTTTTGCCACTGAGCCTTTTGAAA
GTGCGAGACGTGGATCCATTAAACAACGTGGTCTACCCATGCCTACAACG
TGTCAGGTTGCCCCTCCCGCTTGAGATCTTTGACTTGCCTACCCGGAAGT
GGGGGGTCGAACAGGCGTTTGTTCTTGACGAAATATGCTATTTAATAGGC
AAATAAACTTGACGCACTCGCGCTCATCCCACTTCAATCCGCAACCTTCG
TCCCCCTCGACACAAATAGTACCGAGCGGCTTGATGAAGTCGTGCACCTC
GGGATTCCGCAAAGTGATAAAATAGCTGTTGAACATCGAGTGTGAAGTTG
GGGAGTGCAGGATCGGTGCCGCACAAGCTATATGCAGCTACCACCGGTAG
GCATCGTTGCATTGAAGAGAAGTCACTTGGCCAATCAAGCTCCGTAATGC
CCTTGAACAAGTCCAGCACGTCAATTTGTTGAATAGACTCGCCTGGACGC
GTCAGGCCCCGCTGCTGCCGTGCGATTATGCGTACGTTTTCTTGTCGATT
CGTGCACGGCGTACACCATAAGCGCCGCAACCCACACGTCCGTGTCCACC
GACATGATCTCCATCCTTTTGGTGCCCTCCACACTGCCCCTGCGTTGAGA
GTGCAGTCGGCGCGAGGCCTGCCAGGCGTGATGCATCGACTGGAGTTCCC
CTTCCCCGATGCCGTTCTCCCTGTCCTTGACAATGCGTCCGTCCTCACCG
GTGTGCCACGATCGATA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10304:1357..4423+

>mRNA_H-canaliculatus_F_contig10304.323.1 ID=mRNA_H-canaliculatus_F_contig10304.323.1|Name=mRNA_H-canaliculatus_F_contig10304.323.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10304:1357..4423+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTCGGACACATTTCGAGGCGCGGATGGTCGGACACATTTCGAGGCGC
GGGCCCCGCTGCTGCCGTGCGATTATGCGTACGTTTTCTTGTCGATTCGT
GCACGGCGTACACCATAAGCGCCGCAACCCACACGTCCGTGTCCACCGAC
ATGATCTCCATCCTTTTGGTGCCCTCCACACTGCCCCTGCGTTGAGAGTG
CAGTCGGCGCGAGGCCTGCCAGGCGTGATGCATCGACTGGAGTTCCCCTT
CCCCGATGCCGTTCTCCCTGTCCTTGACAATGCGTCCGTCCTCACCGGTG
TGCCACGATCGATAGCCCCGCTGCTGCCGTGCGATTATGCGTACGTTTTC
TTGTCGATTCGTGCACGGCGTACACCATAAGCGCCGCAACCCACACGTCC
GTGTCCACCGACATGATCTCCATCCTTTTGGTGCCCTCCACACTGCCCCT
GCGTTGAGAGTGCAGTCGGCGCGAGGCCTGCCAGGCGTGATGCATCGACT
GGAGTTCCCCTTCCCCGATGCCGTTCTCCCTGTCCTTGACAATGCGTCCG
TCCTCACCGGTGTGCCACGATCGATA
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