mRNA_H-canaliculatus_F_contig103.317.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig103.317.1
Unique NamemRNA_H-canaliculatus_F_contig103.317.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig103.317.1 vs. uniprot
Match: D8LEQ1_ECTSI (Ciliary dynein heavy chain, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEQ1_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.970e-22
Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:  127 ADAATLLHTVAVKAVRRAAGLLAPETARELRVARRKLGLASLTSSERKEKTEHLSRAVEARVLIA 321
            AD ATLLHTVAVKAVR AA LLAPETARELR ARRKLGLASLTSSERKEKT+HLSRAVEARVLIA
Sbjct: 2216 ADPATLLHTVAVKAVRTAAELLAPETARELRAARRKLGLASLTSSERKEKTKHLSRAVEARVLIA 2280
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig103.317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEQ1_ECTSI1.970e-2292.31Ciliary dynein heavy chain, putative n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig103contigH-canaliculatus_F_contig103:31216..31537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928666.3945482-CDS-H-canaliculatus_F_contig103:31215..315361622928666.3945482-CDS-H-canaliculatus_F_contig103:31215..31536Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig103 31216..31536 +
1696845519.2520087-CDS-H-canaliculatus_F_contig103:31215..315361696845519.2520087-CDS-H-canaliculatus_F_contig103:31215..31536Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig103 31216..31536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig103.317.1prot_H-canaliculatus_F_contig103.317.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig103 31216..31536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig103.317.1

>prot_H-canaliculatus_F_contig103.317.1 ID=prot_H-canaliculatus_F_contig103.317.1|Name=mRNA_H-canaliculatus_F_contig103.317.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
HTTRAGVPSITGAVPSPAAAAESSGSGSIDSGARNSSKLLSTADAATLLH
TVAVKAVRRAAGLLAPETARELRVARRKLGLASLTSSERKEKTEHLSRAV
EARVLIA
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mRNA from alignment at H-canaliculatus_F_contig103:31216..31537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig103.317.1 ID=mRNA_H-canaliculatus_F_contig103.317.1|Name=mRNA_H-canaliculatus_F_contig103.317.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=322bp|location=Sequence derived from alignment at H-canaliculatus_F_contig103:31216..31537+ (Hapterophycus canaliculatus Oshoro5f female)
CACACAACCAGGGCCGGGGTTCCGTCCATCACAGGAGCAGTGCCCAGTCC
GGCGGCGGCGGCTGAGAGCAGCGGGAGCGGCAGCATCGACAGTGGTGCCA
GGAACAGTTCAAAGCTTCTATCAACAGCCGACGCGGCCACGCTTCTTCAC
ACAGTGGCAGTTAAAGCGGTCAGACGTGCAGCTGGACTTTTGGCCCCCGA
AACCGCTCGAGAGCTGAGAGTTGCGAGGCGAAAGCTTGGTCTCGCGTCTC
TGACAAGCTCCGAACGGAAGGAGAAGACCGAACATCTGTCGAGAGCAGTC
GAGGCAAGAGTTTTGATCGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig103:31216..31537+

>mRNA_H-canaliculatus_F_contig103.317.1 ID=mRNA_H-canaliculatus_F_contig103.317.1|Name=mRNA_H-canaliculatus_F_contig103.317.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig103:31216..31537+ (Hapterophycus canaliculatus Oshoro5f female)
CACACAACCAGGGCCGGGGTTCCGTCCATCACAGGAGCAGTGCCCAGTCC
GGCGGCGGCGGCTGAGAGCAGCGGGAGCGGCAGCATCGACAGTGGTGCCA
GGAACAGTTCAAAGCTTCTATCAACAGCCGACGCGGCCACGCTTCTTCAC
ACAGTGGCAGTTAAAGCGGTCAGACGTGCAGCTGGACTTTTGGCCCCCGA
AACCGCTCGAGAGCTGAGAGTTGCGAGGCGAAAGCTTGGTCTCGCGTCTC
TGACAAGCTCCGAACGGAAGGAGAAGACCGAACATCTGTCGAGAGCAGTC
GAGGCAAGAGTTTTGATCGCGCACACAACCAGGGCCGGGGTTCCGTCCAT
CACAGGAGCAGTGCCCAGTCCGGCGGCGGCGGCTGAGAGCAGCGGGAGCG
GCAGCATCGACAGTGGTGCCAGGAACAGTTCAAAGCTTCTATCAACAGCC
GACGCGGCCACGCTTCTTCACACAGTGGCAGTTAAAGCGGTCAGACGTGC
AGCTGGACTTTTGGCCCCCGAAACCGCTCGAGAGCTGAGAGTTGCGAGGC
GAAAGCTTGGTCTCGCGTCTCTGACAAGCTCCGAACGGAAGGAGAAGACC
GAACATCTGTCGAGAGCAGTCGAGGCAAGAGTTTTGATCGCG
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