mRNA_H-canaliculatus_F_contig10290.306.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10290.306.1
Unique NamemRNA_H-canaliculatus_F_contig10290.306.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10290.306.1 vs. uniprot
Match: D7FYI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYI2_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 3.470e-44
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    1 FFPAGQMLAIASNQKRDALKVIHSSSCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYPRA 225
            F P GQMLAIASNQ+RDALKV+HS+SCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYP+A
Sbjct:  271 FSPDGQMLAIASNQQRDALKVVHSASCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYPQA 345
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BLAST of mRNA_H-canaliculatus_F_contig10290.306.1 vs. uniprot
Match: A0A6H5KQH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQH1_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 4.760e-43
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    1 FFPAGQMLAIASNQKRDALKVIHSSSCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYPRA 225
            F P GQMLAIASNQKRDALKV+HS+SCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYP+A
Sbjct:  503 FSPDGQMLAIASNQKRDALKVVHSASCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYPQA 577
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BLAST of mRNA_H-canaliculatus_F_contig10290.306.1 vs. uniprot
Match: A0A087SJ35_AUXPR (U3 small nucleolar RNA-associated protein 18-like protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SJ35_AUXPR)

HSP 1 Score: 102 bits (253), Expect = 9.100e-24
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 FFPAGQMLAIASNQKRDALKVIHSSSCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYPRA 225
            F P GQ+LA+AS  KRDAL+++H  S T F+NWPT R+P+ Y   LDFSPGGG LA+GN +G V+LYR+ HYP+A
Sbjct:  381 FSPDGQVLAMASRMKRDALRLLHVPSGTVFSNWPTSRSPLGYVHCLDFSPGGGSLAIGNAKGRVVLYRLHHYPQA 455
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BLAST of mRNA_H-canaliculatus_F_contig10290.306.1 vs. uniprot
Match: A0A388JUK5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JUK5_CHABU)

HSP 1 Score: 102 bits (253), Expect = 1.260e-23
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:   16 QMLAIASNQKRDALKVIHSSSCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYPRA 225
            Q+LA++SN  RDAL+++H  S T F+NWPT RTP+ Y  +LDFSPGGGFLAVGN +G  LLYR+RHY RA
Sbjct:  454 QILAMSSNNNRDALRLVHVPSLTVFSNWPTTRTPLAYIHSLDFSPGGGFLAVGNSQGRALLYRLRHYDRA 523
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BLAST of mRNA_H-canaliculatus_F_contig10290.306.1 vs. uniprot
Match: A0A1Y1IIE5_KLENI (WD40 repeat protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IIE5_KLENI)

HSP 1 Score: 100 bits (248), Expect = 6.200e-23
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 FFPAGQMLAIASNQKRDALKVIHSSSCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYPRA 225
            F P GQ+LAIAS  K+D+L+++H  S T F NWPT R+P+++  +LDFSPGGGF+AVGN +G VLLYR+ HY  A
Sbjct:  451 FNPDGQILAIASRMKKDSLRLVHLPSGTVFQNWPTARSPLQFVHSLDFSPGGGFMAVGNAKGKVLLYRLHHYEHA 525
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BLAST of mRNA_H-canaliculatus_F_contig10290.306.1 vs. uniprot
Match: A0A482UD89_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UD89_9ARCH)

HSP 1 Score: 94.0 bits (232), Expect = 1.550e-22
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:   13 GQMLAIASNQKRDALKVIHSSSCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYPRA 225
            GQ+L ++S + RD+++V+H +S T F+NWPT RTP+ Y  A DFSP  G+LAVGND+G VLLYR+ HY  A
Sbjct:  105 GQLLVMSSQRGRDSMRVVHCASGTVFSNWPTARTPLHYVTATDFSPHSGYLAVGNDKGRVLLYRVNHYQEA 175
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BLAST of mRNA_H-canaliculatus_F_contig10290.306.1 vs. uniprot
Match: W7T4E2_9STRA (U3 small nucleolar rna-associated protein 18 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4E2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.830e-22
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   13 GQMLAIASNQKRDALKVIHSSSCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHY 216
            G +LA+AS   RDAL+V+H  S T F+NWPT +TP+RYP AL FSP  G LAVGNDRG VLLYR+RHY
Sbjct:  548 GMLLAMASKWNRDALRVVHVPSRTVFSNWPTGQTPIRYPSALAFSPNSGMLAVGNDRGRVLLYRLRHY 615
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BLAST of mRNA_H-canaliculatus_F_contig10290.306.1 vs. uniprot
Match: A0A7S3QNQ7_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QNQ7_DUNTE)

HSP 1 Score: 99.0 bits (245), Expect = 1.860e-22
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    1 FFPAGQMLAIASNQKRDALKVIHSSSCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHYPR 222
            F P  Q+LAIAS  K+DA++++H  + T F+NWPT R+P+ Y  +L FSPGGGFLAVGN RG VLLYR+ HY +
Sbjct:  590 FSPDSQVLAIASRMKKDAMRLVHMPTLTVFSNWPTSRSPLHYVHSLAFSPGGGFLAVGNARGRVLLYRLHHYSK 663
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BLAST of mRNA_H-canaliculatus_F_contig10290.306.1 vs. uniprot
Match: A0A8J9WMU6_9CHLO (U3 small nucleolar RNA-associated protein 18 homolog n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WMU6_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 3.420e-22
Identity = 42/72 (58.33%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 FFPAGQMLAIASNQKRDALKVIHSSSCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHY 216
            F P  QMLA+AS  K+DAL+++H  SCT F+NWPT R+P+ Y  +L FSPGGG+LA+GN +G  LLYR+ HY
Sbjct:  545 FSPDTQMLAMASRMKKDALRLVHLPSCTVFSNWPTSRSPLGYVHSLAFSPGGGYLAIGNAKGRTLLYRLHHY 616
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10290.306.1 vs. uniprot
Match: A0A835Z2C0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2C0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 7.840e-22
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:   16 QMLAIASNQKRDALKVIHSSSCTPFTNWPTERTPVRYPFALDFSPGGGFLAVGNDRGCVLLYRIRHY 216
            Q+LAIAS++K+DAL+++H ++ T F NWPT+RTP+ YPF LDFSP   FLAVGND+G VLLYR+  Y
Sbjct:  327 QVLAIASSEKKDALRLVHVTTGTVFANWPTQRTPLGYPFCLDFSPSSNFLAVGNDKGRVLLYRLIPY 393
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10290.306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYI2_ECTSI3.470e-4492.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQH1_9PHAE4.760e-4393.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A087SJ35_AUXPR9.100e-2460.00U3 small nucleolar RNA-associated protein 18-like ... [more]
A0A388JUK5_CHABU1.260e-2364.29Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A1Y1IIE5_KLENI6.200e-2358.67WD40 repeat protein n=1 Tax=Klebsormidium nitens T... [more]
A0A482UD89_9ARCH1.550e-2256.34Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
W7T4E2_9STRA1.830e-2266.18U3 small nucleolar rna-associated protein 18 n=2 T... [more]
A0A7S3QNQ7_DUNTE1.860e-2258.11Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A8J9WMU6_9CHLO3.420e-2258.33U3 small nucleolar RNA-associated protein 18 homol... [more]
A0A835Z2C0_9STRA7.840e-2262.69WD40-repeat-containing domain protein n=1 Tax=Trib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10290contigH-canaliculatus_F_contig10290:46..273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue3e-33
Seed eggNOG ortholog2880.D7FYI2
Preferred nameUTP18
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K11422,ko:K14553
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko03008,map00310,map03008
GOsGO:0000003,GO:0000151,GO:0000462,GO:0001674,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007405,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016070,GO:0016072,GO:0017145,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022613,GO:0030154,GO:0030490,GO:0030532,GO:0030684,GO:0030686,GO:0031090,GO:0031461,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042078,GO:0042254,GO:0042274,GO:0042585,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0046483,GO:0048132,GO:0048468,GO:0048477,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051301,GO:0051704,GO:0061351,GO:0070013,GO:0071704,GO:0071840,GO:0072089,GO:0080008,GO:0090304,GO:0098722,GO:0098728,GO:0120114,GO:1901360,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG2055@1,KOG2055@2759
EC2.1.1.43
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size210
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928663.193924-UTR-H-canaliculatus_F_contig10290:45..631622928663.193924-UTR-H-canaliculatus_F_contig10290:45..63Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10290 46..63 +
1696845517.6528842-UTR-H-canaliculatus_F_contig10290:45..631696845517.6528842-UTR-H-canaliculatus_F_contig10290:45..63Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10290 46..63 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928663.2070777-CDS-H-canaliculatus_F_contig10290:63..2731622928663.2070777-CDS-H-canaliculatus_F_contig10290:63..273Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10290 64..273 +
1696845517.6649098-CDS-H-canaliculatus_F_contig10290:63..2731696845517.6649098-CDS-H-canaliculatus_F_contig10290:63..273Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10290 64..273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10290.306.1prot_H-canaliculatus_F_contig10290.306.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10290 64..273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10290.306.1

>prot_H-canaliculatus_F_contig10290.306.1 ID=prot_H-canaliculatus_F_contig10290.306.1|Name=mRNA_H-canaliculatus_F_contig10290.306.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=70bp
MLAIASNQKRDALKVIHSSSCTPFTNWPTERTPVRYPFALDFSPGGGFLA
VGNDRGCVLLYRIRHYPRA*
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mRNA from alignment at H-canaliculatus_F_contig10290:46..273+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10290.306.1 ID=mRNA_H-canaliculatus_F_contig10290.306.1|Name=mRNA_H-canaliculatus_F_contig10290.306.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=228bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10290:46..273+ (Hapterophycus canaliculatus Oshoro5f female)
TTCTTTCCCGCCGGCCAGATGCTGGCGATCGCGTCCAACCAGAAACGCGA
CGCCCTCAAGGTCATCCACTCCTCGTCCTGCACGCCCTTCACCAACTGGC
CGACGGAGAGGACGCCCGTGCGCTACCCGTTCGCCCTGGACTTCTCCCCG
GGAGGTGGCTTCCTCGCGGTCGGGAACGACCGCGGCTGCGTGCTTCTCTA
CCGCATCCGGCACTACCCGCGGGCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10290:46..273+

>mRNA_H-canaliculatus_F_contig10290.306.1 ID=mRNA_H-canaliculatus_F_contig10290.306.1|Name=mRNA_H-canaliculatus_F_contig10290.306.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=420bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10290:46..273+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGCGATCGCGTCCAACCAGAAACGCGACGCCCTCAAGGTCATCCA
CTCCTCGTCCTGCACGCCCTTCACCAACTGGCCGACGGAGAGGACGCCCG
TGCGCTACCCGTTCGCCCTGGACTTCTCCCCGGGAGGTGGCTTCCTCGCG
GTCGGGAACGACCGCGGCTGCGTGCTTCTCTACCGCATCCGGCACTACCC
GCGGGCGTGAATGCTGGCGATCGCGTCCAACCAGAAACGCGACGCCCTCA
AGGTCATCCACTCCTCGTCCTGCACGCCCTTCACCAACTGGCCGACGGAG
AGGACGCCCGTGCGCTACCCGTTCGCCCTGGACTTCTCCCCGGGAGGTGG
CTTCCTCGCGGTCGGGAACGACCGCGGCTGCGTGCTTCTCTACCGCATCC
GGCACTACCCGCGGGCGTGA
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