mRNA_H-canaliculatus_F_contig1029.305.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1029.305.1
Unique NamemRNA_H-canaliculatus_F_contig1029.305.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1029.305.1 vs. uniprot
Match: D7FIA2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIA2_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.300e-19
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 QVVELAEEVDPVLSFFAYQPLRATAKAGDIPMFLSTKLLPRSDTELADKEEESDRSI 171
            QVVELAEEVDPVL+FFAYQPLRATAK GDIPMFLSTKL+PRSD+  A ++E S+ S+
Sbjct:   56 QVVELAEEVDPVLNFFAYQPLRATAKPGDIPMFLSTKLMPRSDS--AKRDERSEGSV 110
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BLAST of mRNA_H-canaliculatus_F_contig1029.305.1 vs. uniprot
Match: A0A835YKI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKI8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.730e-7
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 QVVELAEEVDPVLSFFAYQPLRATAKAGDIPMFLSTKLLPRSD 129
            Q+ +LAE+VDPVL FFA+QP+R TA    IP+FLST+ L   D
Sbjct:   51 QLADLAEDVDPVLQFFAFQPVRPTANPAHIPLFLSTRPLAEMD 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1029.305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIA2_ECTSI1.300e-1977.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKI8_9STRA1.730e-758.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1029contigH-canaliculatus_F_contig1029:20096..20914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001140.1
Exons2
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928663.1318893-CDS-H-canaliculatus_F_contig1029:20097..201831622928663.1318893-CDS-H-canaliculatus_F_contig1029:20097..20183Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1029 20098..20183 -
1696845517.6279922-CDS-H-canaliculatus_F_contig1029:20097..201831696845517.6279922-CDS-H-canaliculatus_F_contig1029:20097..20183Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1029 20098..20183 -
1622928663.1446948-CDS-H-canaliculatus_F_contig1029:20826..209141622928663.1446948-CDS-H-canaliculatus_F_contig1029:20826..20914Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1029 20827..20914 -
1696845517.6393554-CDS-H-canaliculatus_F_contig1029:20826..209141696845517.6393554-CDS-H-canaliculatus_F_contig1029:20826..20914Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1029 20827..20914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1029.305.1prot_H-canaliculatus_F_contig1029.305.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1029 20098..20914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1029.305.1

>prot_H-canaliculatus_F_contig1029.305.1 ID=prot_H-canaliculatus_F_contig1029.305.1|Name=mRNA_H-canaliculatus_F_contig1029.305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
QVVELAEEVDPVLSFFAYQPLRATAKAGDIPMFLSTKLLPRSDTELADKE
EESDRSIE
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mRNA from alignment at H-canaliculatus_F_contig1029:20096..20914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1029.305.1 ID=mRNA_H-canaliculatus_F_contig1029.305.1|Name=mRNA_H-canaliculatus_F_contig1029.305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=819bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1029:20096..20914- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGGTGGAACTCGCCGAAGAAGTCGATCCGGTACTTAGCTTTTTTGC
CTACCAGCCTTTACGAGCGACAGCCAAAGCTGGCGACAGTGAGTATCACA
CATTTTATACCGGGAATTGAGTTGTTTGCAGCAGAGAGCGGGTTTTCGCT
GAGTATGTTTTGTGGTTAAGGCCCTTTCTACAAGTGTTCGGGTGTGTTGT
ATTTGTTCATCATTTCGGAATTAGCACAACCCATTCTAATGGGTCCAGCC
TAGTTTTTATGACAGCAGGACGTCCACCTTGTGCATATCATCTTTTGAGG
TAGGTGGCTCTCACTTTCGCGAGGAGTGGACGCTCTGATATTGCTTACCG
TATGTGAAAACTCGCTGATTCGTATGAATACGAATACGCCACCCAGGTTG
TATCATGACAAACTAATGTGGCGATCATGAATTCATGTGTTGCGAATTGC
GAGGGTGCATCACACACATAACCAGTACACATGTCACAGTTGCGTTGTAC
CTCGTCTCGATACAACCCTGTACAGAAGACGATGCCACCACTACCACTGC
TTTACCCTTTTCGCTTTTGTGTTTGTGATGAATTTGCATGACCAAGGTCG
CCACACGTTCCTTTTGCATGAATGTCTCCCTCGATCCAAGGGGCACAGTT
CACGATTCGGGCCTTGTTGCGGCATTGAAAAATAATGTCTAAAAACCGGA
AACGTGCGCGCCTCTTCTCTCTTCTCGGCAGTCCCGATGTTCCTGAGCAC
CAAGCTTTTGCCGAGAAGTGACACTGAGCTTGCGGATAAGGAGGAAGAGT
CTGACAGGAGCATCGAAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1029:20096..20914-

>mRNA_H-canaliculatus_F_contig1029.305.1 ID=mRNA_H-canaliculatus_F_contig1029.305.1|Name=mRNA_H-canaliculatus_F_contig1029.305.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1029:20096..20914- (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGGTGGAACTCGCCGAAGAAGTCGATCCGGTACTTAGCTTTTTTGC
CTACCAGCCTTTACGAGCGACAGCCAAAGCTGGCGACACAGGTGGTGGAA
CTCGCCGAAGAAGTCGATCCGGTACTTAGCTTTTTTGCCTACCAGCCTTT
ACGAGCGACAGCCAAAGCTGGCGACATCCCGATGTTCCTGAGCACCAAGC
TTTTGCCGAGAAGTGACACTGAGCTTGCGGATAAGGAGGAAGAGTCTGAC
AGGAGCATCGAATCCCGATGTTCCTGAGCACCAAGCTTTTGCCGAGAAGT
GACACTGAGCTTGCGGATAAGGAGGAAGAGTCTGACAGGAGCATCGAA
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