mRNA_H-canaliculatus_F_contig10289.302.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10289.302.1
Unique NamemRNA_H-canaliculatus_F_contig10289.302.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10289.302.1 vs. uniprot
Match: D7G5Y1_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y1_ECTSI)

HSP 1 Score: 335 bits (859), Expect = 2.390e-106
Identity = 182/221 (82.35%), Postives = 194/221 (87.78%), Query Frame = 1
Query:    1 LSRALFRAKNVVRAVHSVSRRSLRPGEAVFRQGDPGLSLFTVGEGELDVVKEHSGVRHSVAQLSPGSFFGEMALMTSQPRSASVVCSASCEGGCVVDEISGDDFARLLMARKTG---DVMRMLRARQFRHGVYKLLTELGSEATFTDQASKHERHELRQVFDRVDTDKSGDLTLDELKAAFSRADPLLHESAVEEIMTMLDLDAVGSVSFEEFLKIIRWDP 654
            LSRALFRAKNVVRAVHSV++R L PGEAVFRQGD G SLFTV EGEL+VVKEHSGV  +VA+LSPGS FGEMALMT+QPRSASVVC+A  EGGC V+EISGDDFARLLMAR+TG   DVMRMLRARQFRHGVYKLLTELGSEATF+D+       ELRQVFDR DT KSG L+LDELKAAF RADPLL ESAVEEIMTMLDLDAVG VSFEEFLKIIRWDP
Sbjct:  693 LSRALFRAKNVVRAVHSVTKRLLGPGEAVFRQGDRGSSLFTVEEGELNVVKEHSGVHRTVARLSPGSLFGEMALMTAQPRSASVVCAA--EGGCAVEEISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLTELGSEATFSDE-------ELRQVFDRADTAKSGTLSLDELKAAFLRADPLLDESAVEEIMTMLDLDAVGCVSFEEFLKIIRWDP 904          
BLAST of mRNA_H-canaliculatus_F_contig10289.302.1 vs. uniprot
Match: A0A6H5JE67_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE67_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 2.360e-104
Identity = 182/221 (82.35%), Postives = 193/221 (87.33%), Query Frame = 1
Query:    1 LSRALFRAKNVVRAVHSVSRRSLRPGEAVFRQGDPGLSLFTVGEGELDVVKEHSGVRHSVAQLSPGSFFGEMALMTSQPRSASVVCSASCEGGCVVDEISGDDFARLLMARKTG---DVMRMLRARQFRHGVYKLLTELGSEATFTDQASKHERHELRQVFDRVDTDKSGDLTLDELKAAFSRADPLLHESAVEEIMTMLDLDAVGSVSFEEFLKIIRWDP 654
            LSRALFRAKNVVRAVHSV++R L PGEAVFRQGD G SLFTV EGEL+VVKEHSGV  +VA+L PGS FGEMALMT+QPRSASVVC+A  EGGC VDEISGDDFARLLMAR+TG   DVMRMLRARQFRHGVYKLLTELGSEATFTD+       ELRQVFDR DT KSG L+L ELKAAF RADPLL ESAVEEIMTMLDLDAVGSVSF+EFLKIIRWDP
Sbjct:  925 LSRALFRAKNVVRAVHSVTKRLLGPGEAVFRQGDRGSSLFTVEEGELNVVKEHSGVHRTVARLPPGSLFGEMALMTAQPRSASVVCAA--EGGCAVDEISGDDFARLLMARRTGFRRDVMRMLRARQFRHGVYKLLTELGSEATFTDE-------ELRQVFDRADTAKSGTLSLGELKAAFLRADPLLDESAVEEIMTMLDLDAVGSVSFDEFLKIIRWDP 1136          
BLAST of mRNA_H-canaliculatus_F_contig10289.302.1 vs. uniprot
Match: A0A836CF38_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF38_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.540e-55
Identity = 108/221 (48.87%), Postives = 146/221 (66.06%), Query Frame = 1
Query:    4 SRALFRAKNVVRAVHSVSRRSLRPGEAVFRQGDPGLSLFTVGEGELDVVKEHSGVR-HSVAQLSPGSFFGEMALMTSQPRSASVVCSASCEGGCVVDEISGDDFARLLMARKTG---DVMRMLRARQFRHGVYKLLTELGSEATFTDQASKHERHELRQVFDRVDTDKSGDLTLDELKAAFSRADPLLHESAVEEIMTMLDLDAVGSVSFEEFLKIIRWDP 654
            SR + R K ++RA+++V R  +R GE V RQG+ G S++T+ +G LDV+KE   +   +VA L PGS+FGEMA++  QPR+A+V CS  CE  CV+DE+SG +F +LLM+R +    DV +++RARQFRHGVYKLL          D  +     ELR VFD VD D SG++ L EL  A  R D  L E  V EI+ +LDLDA  ++SFEEF+KII +DP
Sbjct:  528 SRQMVRTKALLRALNTVRRLKVRGGEVVVRQGEVGKSMYTIVDGNLDVIKESPPLAPRTVAVLKPGSYFGEMAVLLKQPRNATVACSRGCEW-CVIDEVSGAEFLKLLMSRPSSFRRDVQQLMRARQFRHGVYKLLAAQEVAVPSLDSRTTFSTEELRAVFDAVDVDDSGEIELSELTEALFRVDSGLTEEGVREIIAILDLDASNTISFEEFVKIISFDP 747          
BLAST of mRNA_H-canaliculatus_F_contig10289.302.1 vs. uniprot
Match: D8LCM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCM7_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 1.590e-48
Identity = 110/218 (50.46%), Postives = 122/218 (55.96%), Query Frame = 1
Query:    1 LSRALFRAKNVVRAVHSVSRRSLRPGEAVFRQGDPGLSLFTVGEGELDVVKEHSGVRHSVAQLSPGSFFGEMALMTSQPRSASVVCSASCEGGCVVDEISGDDFARLLMARKTGDVMRMLRARQFRHGVYKLLTELGSEATFTDQASKHERHELRQVFDRVDTDKSGDLTLDELKAAFSRADPLLHESAVEEIMTMLDLDAVGSVSFEEFLKIIRWDP 654
            LSRALFRAKNVVRAVHSV++R L PGEAVFRQGD G SLFTV EGEL+VVKEHSGV  +V +LSPGS             +A   CS S                                              LG+   F  ++      E         T KSG L+L ELKAA  RADPLLHESAVEEIMTMLDL+AVGSVSF+EFLKIIRWDP
Sbjct:   57 LSRALFRAKNVVRAVHSVTKRLLGPGEAVFRQGDRGSSLFTVEEGELNVVKEHSGVHRTVVRLSPGS-----------SGTACTRCSHS----------------------------------------------LGARRPFRTRSCGRSSAE---------TAKSGTLSLAELKAALLRADPLLHESAVEEIMTMLDLNAVGSVSFQEFLKIIRWDP 208          
BLAST of mRNA_H-canaliculatus_F_contig10289.302.1 vs. uniprot
Match: D7FSY6_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSY6_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 7.530e-25
Identity = 84/209 (40.19%), Postives = 114/209 (54.55%), Query Frame = 1
Query:    7 RALFRAKNVVRAVHSVSRRSLRPGEAVFRQGDPGLSLFTVGEGELDV-VKEHSGVRHS---------VAQLSPGSFFGEMALMTSQPRSASVVCSASC---EGG---------CVVDEISGDDFARLLMARKT--GDVMRMLRARQFRHGVYKLLTELGSEATFTDQASKHERHELRQVFDRVDTDKSGDLTLDELKAAFSRADPLLHE 561
            R + RAK ++RAV S+++R L  G AV +QGD G S++TV EG+LDV  K   G  +          VA LS G  FGEMALM  QPRSA+VVCS+     EGG         CVV+EI G+DF R+L    +    +  ++R R FR  +  LLT  G+E           + ++R  F+ VDTDKSG L  +E+  A  + +  L E
Sbjct:  456 RDISRAKTLLRAVGSITQRRLPAGSAVVQQGDLGDSMYTVVEGKLDVRAKGREGEGNGRAGHPYGDKVASLSAGDVFGEMALMLKQPRSATVVCSSPTLPGEGGGTDRVPGGFCVVNEIKGEDFVRMLKQSDSFLKSMKVIMRTRLFRRAML-LLTAAGTETL--------SKEKMRAAFEMVDTDKSGYLDANEVLEALKKLESSLGE 655          
BLAST of mRNA_H-canaliculatus_F_contig10289.302.1 vs. uniprot
Match: A0A1Z5K2I9_FISSO (cGMP-dependent protein kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2I9_FISSO)

HSP 1 Score: 99.4 bits (246), Expect = 2.040e-20
Identity = 72/216 (33.33%), Postives = 111/216 (51.39%), Query Frame = 1
Query:    7 RALFRAKNVVRAVHSVSRRSLRPGEAVFRQGDPGLSLFTVGE---GELDVVKEHSGVRHSVAQLSPGSFFGEMALMTSQPRSASVVCSASCEGGCVVDEISGDDFARLLMARKTGDVMRMLRARQFRHGVYKLLTELGSEATFTDQASKHERHELRQVFDRVDTDKSGDLTLDELKAAFSRADPLLHESAVEEIMTMLDLDAVGSVSFEEFLKIIR 645
            R L  AKN++R   ++  R+   GE V+++GDPG S+F V +   GEL V   H+G    V +  PG  FGE +L+  +PRS++V C +     C + E+  +DF  L +A  T ++     A  FR+   K L +   +A    +       +L + F   D DKSG L LDE++    R DP      +  ++  +D+D  G VSFEEF ++ R
Sbjct:  642 RQLQYAKNLLRLQKNIIPRTYTKGEVVYKEGDPGTSMFRVDDEDGGELHV--SHNGTL--VHKYFPGDSFGESSLLFKRPRSSTVECVSDV---CRLSEMQAEDF--LAVAESTPEM-----AASFRNICRKRLFKKAVKAYSLSKKRGLTDDDLVKAFHESDADKSGSLNLDEVRQLMHRMDPNFPIEEIVALLKFVDVDEDGQVSFEEFRRLFR 843          
BLAST of mRNA_H-canaliculatus_F_contig10289.302.1 vs. uniprot
Match: A0A7S2RFQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RFQ5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.060e-17
Identity = 57/208 (27.40%), Postives = 109/208 (52.40%), Query Frame = 1
Query:   19 RAKNVVRAVHSVSRRSLRPGEAVFRQGDPGLSLFTVGEGELDVVKEHSGVRHSVAQLSPGSFFGEMALMTSQPRSASVVCSASCEGGCVVDEISGDDFARLLMARKTGDVMRMLRARQFRHGVYKLLT-ELGSEATFTDQASKHERHELRQVFDRVDTDKSGDLTLDELKAAFSRADPLLHESAVEEIMTMLDLDAVGSVSFEEFLKI 639
            RAK+++R   ++     + G+ +FR+G+ G  L+ + +G+++++ +      ++  +  G   GE +L+ ++PR++S VC +     C+V E+   DF  +     +  V + +R    R    K +  E+ +    T+         LR+VFD VD D SGDL+LDE++      D    E  ++EI+  +DL+  G ++F+EF +I
Sbjct:   61 RAKSILRIQKNLREFKAKKGDYLFRKGEEGDKLYILEKGQINILGDDG---KTIFTVKEGDLCGEHSLVMARPRNSSAVCVSD---ECIVYEMKARDFYAIY--NSSSHVKKSIRELCLRREFQKAVVHEMKNHFPSTEN--------LRKVFDTVDEDHSGDLSLDEIRKFMISFDSSFSEDEIQEIVEAMDLNESGKINFDEFKQI 252          
BLAST of mRNA_H-canaliculatus_F_contig10289.302.1 vs. uniprot
Match: A0A7S3KX92_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KX92_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.610e-15
Identity = 65/208 (31.25%), Postives = 99/208 (47.60%), Query Frame = 1
Query:   43 VHSVSRRSLRPGEAVFRQGDPGLSLFTVGEGELDVVKEHSG------VRHSVAQLSPGSFFGEMALMTSQPRSASVVCSASCEGGCVVDEISGDDF----ARLLMARKTGDVMRMLRARQFRHGVYKLLTELGSEATFTDQASKHERHELRQVFDRVDTDKSGDLTLDELKAAFSR-ADPLLHESAVEEIMTMLDLDAVGSVSFEEFL 633
            + S+  R   PG+ VF +G  G SLF V +G  DV+   +       + + V Q+  GS FGE+AL+ S PR+A++          VV E+   DF    AR ++  K    ++  R  +FR        +L +     D     +R  L +VF ++DTD SG + + EL    +R A     +  V  +M MLD D+ GS+   EFL
Sbjct:   52 MQSLQVRRYYPGDVVFYKGTEGTSLFFVQQGTFDVIVGENNADPADPMSYRVDQIQSGSVFGEIALLLSMPRTATICAHTE----AVVHELQRSDFEAVAARSIVLNKRLQAIKEERFVRFRK-------DLEAACFNPDNLEPKQRAYLMEVFKQIDTDGSGAIDVAELAVMLTRLAGRFFSDEQVTAMMDMLDQDSNGSIEAPEFL 248          
BLAST of mRNA_H-canaliculatus_F_contig10289.302.1 vs. uniprot
Match: A0A7S2L6K5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L6K5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.010e-14
Identity = 59/209 (28.23%), Postives = 103/209 (49.28%), Query Frame = 1
Query:   19 RAKNVVRAVHSVSRRSLRPGEAVFRQGDPGLSLFTVGEGELDVVKEHSGVRHSVAQLSPGSFFGEMALMTSQPRSASVVCSASCEGGCVVDEISGDDFARLLMARK--TGDVMRMLRARQFRHGVYKLLTELGSEATFTDQASKHERHELRQVFDRVDTDKSGDLTLDELKAAFSRADPLLHESAVEEIMTMLDLDAVGSVSFEEFLKI 639
            RAK +++  + +   + + GE ++++GDPG SLF V +G +D+    S   H V + + G+F GE +L+T + R+ +  C +     CV   + G DF +L+ A       +  M+  R F+  V   +  LG E  + D          R+ F+ VD +K G L  +++       D    +  V+ +M  LDL   G V ++EF+K+
Sbjct:  267 RAKALLKLQNGMKSETFKRGETLYKEGDPGDSLFIVEDGVVDI----STQGHQVIKATEGNFCGEHSLLTGRKRNTTATCISD---ECVALRMLGRDFRQLMDAAPHVKESLTDMMNRRDFKKAV---VLRLGHEFPYDDP---------RKAFNAVDINKRGFLKHEDIAHIMRSMDEDYTDQEVDMMMHTLDLSRDGKVLYDEFVKV 456          
BLAST of mRNA_H-canaliculatus_F_contig10289.302.1 vs. uniprot
Match: A0A1G0NPS4_9BACT (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1G0NPS4_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 3.190e-13
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   52 VSRRSLRPGEAVFRQGDPGLSLFTVGEGELDV-VKEHSGVRHSVAQLSPGSFFGEMALMTSQPRSASVVCSASC 270
            V +R  + GE VF QGDPGL ++ + EGE+ + + EH G    +A L+ G FFGE+AL+   PRSAS VC   C
Sbjct:   50 VHKREYKAGEPVFYQGDPGLGMYIIQEGEVSIRIAEHEGEDKELAVLAEGDFFGELALLDESPRSASAVCHTDC 123          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10289.302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Y1_ECTSI2.390e-10682.35cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5JE67_9PHAE2.360e-10482.35cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A836CF38_9STRA1.540e-5548.87cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
D8LCM7_ECTSI1.590e-4850.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FSY6_ECTSI7.530e-2540.19cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A1Z5K2I9_FISSO2.040e-2033.33cGMP-dependent protein kinase n=2 Tax=Fistulifera ... [more]
A0A7S2RFQ5_9STRA3.060e-1727.40Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S3KX92_9STRA6.610e-1531.25Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2L6K5_9STRA2.010e-1428.23Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A1G0NPS4_9BACT3.190e-1347.30Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10289contigH-canaliculatus_F_contig10289:2673..4959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score335.1
Seed ortholog evalue2.4e-89
Seed eggNOG ortholog2880.D7G5Y1
KEGG koko:K07376,ko:K08813,ko:K13412
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04626,ko04713,ko04714,ko04730,ko04740,ko04923,ko04970,ko05145,map04022,map04270,map04540,map04611,map04626,map04713,map04714,map04730,map04740,map04923,map04970,map05145
KEGG ModuleM00694
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009931,GO:0009987,GO:0010857,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046777,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.cGMP-dependent protein kinase activity
EggNOG OGsCOG0664@1,KOG0032@1,KOG0032@2759,KOG0614@2759
EC2.7.11.1,2.7.11.12
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categorymitochondrion
Exons5
Model size657
Cds size657
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10289.302.1prot_H-canaliculatus_F_contig10289.302.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10289 2673..4959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928662.7996898-CDS-H-canaliculatus_F_contig10289:2672..27021622928662.7996898-CDS-H-canaliculatus_F_contig10289:2672..2702Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 2673..2702 -
1696845517.5673842-CDS-H-canaliculatus_F_contig10289:2672..27021696845517.5673842-CDS-H-canaliculatus_F_contig10289:2672..2702Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 2673..2702 -
1622928662.8442698-CDS-H-canaliculatus_F_contig10289:3144..33151622928662.8442698-CDS-H-canaliculatus_F_contig10289:3144..3315Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 3145..3315 -
1696845517.5797775-CDS-H-canaliculatus_F_contig10289:3144..33151696845517.5797775-CDS-H-canaliculatus_F_contig10289:3144..3315Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 3145..3315 -
1622928662.8875444-CDS-H-canaliculatus_F_contig10289:3757..38721622928662.8875444-CDS-H-canaliculatus_F_contig10289:3757..3872Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 3758..3872 -
1696845517.588-CDS-H-canaliculatus_F_contig10289:3757..38721696845517.588-CDS-H-canaliculatus_F_contig10289:3757..3872Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 3758..3872 -
1622928662.8998976-CDS-H-canaliculatus_F_contig10289:4025..41701622928662.8998976-CDS-H-canaliculatus_F_contig10289:4025..4170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 4026..4170 -
1696845517.597287-CDS-H-canaliculatus_F_contig10289:4025..41701696845517.597287-CDS-H-canaliculatus_F_contig10289:4025..4170Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 4026..4170 -
1622928662.9130533-CDS-H-canaliculatus_F_contig10289:4763..49591622928662.9130533-CDS-H-canaliculatus_F_contig10289:4763..4959Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 4764..4959 -
1696845517.6076639-CDS-H-canaliculatus_F_contig10289:4763..49591696845517.6076639-CDS-H-canaliculatus_F_contig10289:4763..4959Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 4764..4959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10289.302.1

>prot_H-canaliculatus_F_contig10289.302.1 ID=prot_H-canaliculatus_F_contig10289.302.1|Name=mRNA_H-canaliculatus_F_contig10289.302.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=219bp
LSRALFRAKNVVRAVHSVSRRSLRPGEAVFRQGDPGLSLFTVGEGELDVV
KEHSGVRHSVAQLSPGSFFGEMALMTSQPRSASVVCSASCEGGCVVDEIS
GDDFARLLMARKTGDVMRMLRARQFRHGVYKLLTELGSEATFTDQASKHE
RHELRQVFDRVDTDKSGDLTLDELKAAFSRADPLLHESAVEEIMTMLDLD
AVGSVSFEEFLKIIRWDP*
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mRNA from alignment at H-canaliculatus_F_contig10289:2673..4959-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10289.302.1 ID=mRNA_H-canaliculatus_F_contig10289.302.1|Name=mRNA_H-canaliculatus_F_contig10289.302.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2287bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10289:2673..4959- (Hapterophycus canaliculatus Oshoro5f female)
CTCAGCCGAGCGCTGTTCAGGGCCAAGAACGTCGTCCGCGCCGTGCACTC CGTCAGCAGGAGGAGTTTGAGGCCGGGGGAGGCGGTTTTCCGACAGGGGG ATCCGGGGCTCTCGCTCTTCACGGTGGGCGAGGGGGAGCTGGACGTGGTG AAGGAGCACTCGGGGGTTCGCCACAGCGTGGCTCAGCTATCACCAGGTTT GGGGCGCATGACGCGGCGGGCTCCTGTGCGGCTGCTGTGGTTGGAGGTCG CTGTTGCTGTTTGTGTCTGTTGCTGTCGGTGTGGTGGCGGGGGGTGGGGT AGGTTGACTGCCGCTGCCATTGCTGCGCGCCACGCTTCGTTTCCGGTGTG CGAGGCGGAGGCGTCGAGCTTTGCCGCGGGGGTGACGTGCGTTGAATGCC GCCGCCGTCGCTGTGCGTCAGGCTTCGTTTTCTGGCGTGCGAGGCGGAGG CGTCGATCTTGTCGAGCTTTGCCGCGGAAAGGCAGAGGCCAAGACGACTG CCACTGCTACTTGTCGCACGTGAAAGAAGGATCGGCACAAAGACGTGTTT GAAGGCGAAAAAACAGTCGGGTACACGACGGCGAACCCACGGAAGCGCCG CTCGAACGCGCTCAACCACGAGTGCCTGGGCCGTTGCAGGAAAGAGGAGA GGGAGGATCGACGACAACGACGAAAACAAGGACAAAGATAGAAGCAGCAG CAGCAGCAGCAGCAGCGACAATAGGAGCCAGACTTTGTTTCTCACTCCCT TGATCCGTGAACCTTTCCCCCCCATCACCCGCCCCGCAGGCAGCTTCTTC GGCGAGATGGCGCTCATGACGTCCCAGCCGCGCTCCGCCTCCGTGGTGTG CTCTGCCTCTTGTGAGGGCGGCTGCGTAGTCGATGAAATCAGCGGCGACG ACTTCGCCCGCCTTCTGATGGCGAGGAAGACGGGGTTCCGCAGGCAAGGG GCTCGTCGGAGGATAGAGATGGGGGGGGTGGTGGGGGGTGATTGGTGTGT GGAAGGGGGGGGGGTGTATGCGCGACCTACGACCCACACATGCGCTGATC GTGATGTGGTCTGATCGCCTGATCGCCTCCTTCGCAGGGACGTGATGCGC ATGCTGCGGGCGAGGCAGTTCCGGCACGGCGTGTACAAGCTGCTGACGGA GCTAGGGAGTGAGGCTACCTTCACCGACCAGGCGAGTAAGCACGAAAGGC ATGTATACACGCATGCTTCAAAAACATCTCTTCAATGTCGTCCACTCTTT TTCCTAGAAAACACTCAAGAACAAAGGAGGAATAAACACTTTCTGAGCCA AGCACGTCTAAAGAAGGAATAGATACCTGCTGAGCCAAGTACACCTGTCT CGGCGGACGTCTCAGGAGGCTTGTGTTGATGAGGGGCGATGTTGTCGAGA CTTTCCCCTAGAAAATGCTCAACAACGCAGAAGGCATACCCTCTGAGCCA GGTAAGCCTGTCTCAGCAGACGTCTCAGGAGGCTTGATTTCGCTCTCCTA TTTGTTCTTGTTTTTCGCACACCTGCGTATGCATCCACCCCTAGCACCCA CCCACCAAACTCGCCTGCTGCAGAGTCCCTCGACATTAGCCAACACCATC CAACGCTTCCCCCCCTCCCCCGATCGACCCACCTCGACTCGCAGGAGCTG CGGCAGGTGTTTGACCGAGTGGACACAGACAAATCCGGCGACTTGACCCT GGACGAGCTCAAGGCGGCCTTCTCAAGGGCGGACCCGCTGCTCCACGAGT CGGCGGTGGAAGAGATCATGACCATGCTCGACCTGGATGCGGTTGGCAGC GTGTCTTTCGAGGAGGTGAGCGGTGAAGAACGACGCCCGTCCTGTCCCTC ACGCCGTAGAGGATTATGGCTGGGGCAGTGGGTGAGTGTGTGCGATTGGG GCTGGGTGGATGGTTATGGATGGATGGATCTGCGGGTACGTGGGTGAGGG TAGGCAGGGGGGTGGATGCTGGTGGTTTGGTACCCGACCTGTTGGCGCCT ATGAATTCATCACGGCTTCTTACGAAGCGACCGCACGCAGCTTGTCCAGC CTTTCGGGAACCGCCCATGTAAGGAAAACGTGGTCGCGCGCGCCGTGTGC CGCCCAGCCATCACCAGTAAAACCCACCACCGCGTGGAGAATGCGTGTGA CGAGGAAGACAACGCCATTTGCAAAATATACACAAACTTTAGTGTGGACG AATATGATGGTAACAACAACAACAACAATCTAGCACTGTTTTTTATCTTC GCCGCAGTTCCTCAAGATCATTCGGTGGGACCCGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10289:2673..4959-

>mRNA_H-canaliculatus_F_contig10289.302.1 ID=mRNA_H-canaliculatus_F_contig10289.302.1|Name=mRNA_H-canaliculatus_F_contig10289.302.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1314bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10289:2673..4959- (Hapterophycus canaliculatus Oshoro5f female)
CTCAGCCGAGCGCTGTTCAGGGCCAAGAACGTCGTCCGCGCCGTGCACTC
CGTCAGCAGGAGGAGTTTGAGGCCGGGGGAGGCGGTTTTCCGACAGGGGG
ATCCGGGGCTCTCGCTCTTCACGGTGGGCGAGGGGGAGCTGGACGTGGTG
AAGGAGCACTCGGGGGTTCGCCACAGCGTGGCTCAGCTATCACCAGCTCA
GCCGAGCGCTGTTCAGGGCCAAGAACGTCGTCCGCGCCGTGCACTCCGTC
AGCAGGAGGAGTTTGAGGCCGGGGGAGGCGGTTTTCCGACAGGGGGATCC
GGGGCTCTCGCTCTTCACGGTGGGCGAGGGGGAGCTGGACGTGGTGAAGG
AGCACTCGGGGGTTCGCCACAGCGTGGCTCAGCTATCACCAGGCAGCTTC
TTCGGCGAGATGGCGCTCATGACGTCCCAGCCGCGCTCCGCCTCCGTGGT
GTGCTCTGCCTCTTGTGAGGGCGGCTGCGTAGTCGATGAAATCAGCGGCG
ACGACTTCGCCCGCCTTCTGATGGCGAGGAAGACGGGGCAGCTTCTTCGG
CGAGATGGCGCTCATGACGTCCCAGCCGCGCTCCGCCTCCGTGGTGTGCT
CTGCCTCTTGTGAGGGCGGCTGCGTAGTCGATGAAATCAGCGGCGACGAC
TTCGCCCGCCTTCTGATGGCGAGGAAGACGGGGGACGTGATGCGCATGCT
GCGGGCGAGGCAGTTCCGGCACGGCGTGTACAAGCTGCTGACGGAGCTAG
GGAGTGAGGCTACCTTCACCGACCAGGCGAGTAAGCACGAAAGGCATGGA
CGTGATGCGCATGCTGCGGGCGAGGCAGTTCCGGCACGGCGTGTACAAGC
TGCTGACGGAGCTAGGGAGTGAGGCTACCTTCACCGACCAGGCGAGTAAG
CACGAAAGGCATGAGCTGCGGCAGGTGTTTGACCGAGTGGACACAGACAA
ATCCGGCGACTTGACCCTGGACGAGCTCAAGGCGGCCTTCTCAAGGGCGG
ACCCGCTGCTCCACGAGTCGGCGGTGGAAGAGATCATGACCATGCTCGAC
CTGGATGCGGTTGGCAGCGTGTCTTTCGAGGAGGAGCTGCGGCAGGTGTT
TGACCGAGTGGACACAGACAAATCCGGCGACTTGACCCTGGACGAGCTCA
AGGCGGCCTTCTCAAGGGCGGACCCGCTGCTCCACGAGTCGGCGGTGGAA
GAGATCATGACCATGCTCGACCTGGATGCGGTTGGCAGCGTGTCTTTCGA
GGAGTTCCTCAAGATCATTCGGTGGGACCCGTGATTCCTCAAGATCATTC
GGTGGGACCCGTGA
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