mRNA_H-canaliculatus_F_contig10289.301.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10289.301.1
Unique NamemRNA_H-canaliculatus_F_contig10289.301.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10289.301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10289contigH-canaliculatus_F_contig10289:1721..2178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size460
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928662.6756587-CDS-H-canaliculatus_F_contig10289:1720..21131622928662.6756587-CDS-H-canaliculatus_F_contig10289:1720..2113Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 1721..2113 +
1696845517.541446-CDS-H-canaliculatus_F_contig10289:1720..21131696845517.541446-CDS-H-canaliculatus_F_contig10289:1720..2113Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10289 1721..2113 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928662.6935098-UTR-H-canaliculatus_F_contig10289:2113..21781622928662.6935098-UTR-H-canaliculatus_F_contig10289:2113..2178Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10289 2114..2178 +
1696845517.549869-UTR-H-canaliculatus_F_contig10289:2113..21781696845517.549869-UTR-H-canaliculatus_F_contig10289:2113..2178Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10289 2114..2178 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10289.301.1prot_H-canaliculatus_F_contig10289.301.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10289 1721..2113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10289.301.1

>prot_H-canaliculatus_F_contig10289.301.1 ID=prot_H-canaliculatus_F_contig10289.301.1|Name=mRNA_H-canaliculatus_F_contig10289.301.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=131bp
SCSQDLQARCYRGRQPWPERDRRTYPPPLLRLCRNLLYRTHPSPLKTDRS
SSTSRSPLAQRGLPRGRATQRPHRSGMAEASAASTNRRKVGGVYFHGRPC
LAAEYTRVRLLRTRMSSARTNVGREAATRG*
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mRNA from alignment at H-canaliculatus_F_contig10289:1721..2178+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10289.301.1 ID=mRNA_H-canaliculatus_F_contig10289.301.1|Name=mRNA_H-canaliculatus_F_contig10289.301.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=458bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10289:1721..2178+ (Hapterophycus canaliculatus Oshoro5f female)
AGCTGCTCGCAAGACCTACAAGCACGCTGCTACCGCGGGAGGCAGCCATG
GCCGGAGCGCGATCGACGTACCTACCCCCCCCCTCTGCTGCGCCTGTGCC
GGAACCTCCTCTACCGCACGCATCCGAGTCCCCTCAAGACCGATCGTTCA
AGCTCGACCTCTCGATCTCCCCTCGCTCAACGCGGTCTTCCCCGAGGGAG
AGCTACCCAAAGACCCCATCGTTCGGGGATGGCAGAGGCGTCGGCAGCCT
CAACAAACCGTCGAAAAGTTGGAGGAGTCTACTTTCACGGGCGTCCATGT
CTAGCCGCGGAATACACCCGAGTGCGCTTACTACGTACAAGGATGAGCTC
TGCACGGACGAACGTGGGGCGTGAAGCCGCTACCCGTGGTTAGCGCTACC
TATTACATTCGACCTTCCCGGGGCTACTGCCCACAAACAGCGAACTACTA
TTGGCACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10289:1721..2178+

>mRNA_H-canaliculatus_F_contig10289.301.1 ID=mRNA_H-canaliculatus_F_contig10289.301.1|Name=mRNA_H-canaliculatus_F_contig10289.301.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=786bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10289:1721..2178+ (Hapterophycus canaliculatus Oshoro5f female)
AGCTGCTCGCAAGACCTACAAGCACGCTGCTACCGCGGGAGGCAGCCATG
GCCGGAGCGCGATCGACGTACCTACCCCCCCCCTCTGCTGCGCCTGTGCC
GGAACCTCCTCTACCGCACGCATCCGAGTCCCCTCAAGACCGATCGTTCA
AGCTCGACCTCTCGATCTCCCCTCGCTCAACGCGGTCTTCCCCGAGGGAG
AGCTACCCAAAGACCCCATCGTTCGGGGATGGCAGAGGCGTCGGCAGCCT
CAACAAACCGTCGAAAAGTTGGAGGAGTCTACTTTCACGGGCGTCCATGT
CTAGCCGCGGAATACACCCGAGTGCGCTTACTACGTACAAGGATGAGCTC
TGCACGGACGAACGTGGGGCGTGAAGCCGCTACCCGTGGTTAGAGCTGCT
CGCAAGACCTACAAGCACGCTGCTACCGCGGGAGGCAGCCATGGCCGGAG
CGCGATCGACGTACCTACCCCCCCCCTCTGCTGCGCCTGTGCCGGAACCT
CCTCTACCGCACGCATCCGAGTCCCCTCAAGACCGATCGTTCAAGCTCGA
CCTCTCGATCTCCCCTCGCTCAACGCGGTCTTCCCCGAGGGAGAGCTACC
CAAAGACCCCATCGTTCGGGGATGGCAGAGGCGTCGGCAGCCTCAACAAA
CCGTCGAAAAGTTGGAGGAGTCTACTTTCACGGGCGTCCATGTCTAGCCG
CGGAATACACCCGAGTGCGCTTACTACGTACAAGGATGAGCTCTGCACGG
ACGAACGTGGGGCGTGAAGCCGCTACCCGTGGTTAG
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