mRNA_H-canaliculatus_F_contig10285.299.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10285.299.1
Unique NamemRNA_H-canaliculatus_F_contig10285.299.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10285.299.1 vs. uniprot
Match: A0A6H5K5Q3_9PHAE (AP4E_app_platf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5Q3_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.110e-56
Identity = 102/109 (93.58%), Postives = 103/109 (94.50%), Query Frame = 1 
Query:    1 MAWVLGEYGSLASPPRGPREVSTALCAVASGPSFRDPTTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEV 327
            MAWVLGEYGSLAS PRG  EVST LC VASG SFRDP+TCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEV
Sbjct:  487 MAWVLGEYGSLASTPRGALEVSTKLCGVASGMSFRDPSTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEV 595
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BLAST of mRNA_H-canaliculatus_F_contig10285.299.1 vs. uniprot
Match: A0A835Z519_9STRA (AP-2 complex subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z519_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.440e-26
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:    1 MAWVLGEYGSLASPPRGPREVSTALCAVASGPSFRDPTTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEV 327
            MAWVLGEY  LA       +++  LCA+A   +F+DP T G++VTALMKL+AQ G V+   A L+   S S+Q+DLQQRCLEF  LAR G A M A LPVDASCED++V
Sbjct:  545 MAWVLGEYAYLAPDALDADKLAEELCAMARSRTFKDPCTRGYIVTALMKLAAQRGAVAAGTAQLVEDLSASQQTDLQQRCLEFTALARRG-AVMVAALPVDASCEDLQV 652
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BLAST of mRNA_H-canaliculatus_F_contig10285.299.1 vs. uniprot
Match: A0A7S3XR32_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR32_HETAK)

HSP 1 Score: 103 bits (257), Expect = 1.180e-23
Identity = 63/108 (58.33%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:    4 AWVLGEYGSLASPPRGPREVSTALCAVASGPSFRDPTTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEV 327
            AWVLGEYG LAS P    E+   LCA+A    F+DP+T G  VTA+MKL AQ+G + P  A L+  YS S Q DLQQRC EF  L R  P AM   LPVDASCEDVEV
Sbjct:  299 AWVLGEYGYLASGP-SQAELVDLLCALAER-RFQDPSTRGVCVTAVMKLCAQTGTLPPAAARLVEAYSCSVQVDLQQRCREFAALLRH-PQAMVDALPVDASCEDVEV 403
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BLAST of mRNA_H-canaliculatus_F_contig10285.299.1 vs. uniprot
Match: A0A4D9D583_9STRA (AP-2 complex subunit alpha n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D583_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.630e-19
Identity = 55/110 (50.00%), Postives = 72/110 (65.45%), Query Frame = 1 
Query:    1 MAWVLGEYGSLASPPRGPR-EVSTALCAVASGPSFRDPTTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEV 327
            M+W LGEYG L+   R P+ E+   L A  +   F DP T GFVV A++KL AQ+G     V+ L+ LYSQS+  DLQQRCLE+  L  + P+ +  VLPVDASCED++V
Sbjct:  504 MSWTLGEYGYLSK--RLPQSELIEYLAADIAHRPFVDPCTRGFVVAAVVKLVAQTGSCPVAVSSLIALYSQSRNLDLQQRCLEYTALL-QAPSLLVDVLPVDASCEDLDV 610
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BLAST of mRNA_H-canaliculatus_F_contig10285.299.1 vs. uniprot
Match: A0A7S3VAQ8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAQ8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.040e-18
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 1 
Query:    1 MAWVLGEYGSLASPPRGPREVSTALCAVASGPSFRDPTTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEV 327
            MAWVLGEY  L S      E+  +LCA+         +T   +V+A+MKL AQ+G   P  A ++  +++SK  DLQQRC+EF  +    P  +  +LPVDASCEDV+V
Sbjct:  510 MAWVLGEYAYL-SADYSLEEILNSLCAMVKKGKHLQQSTRKIIVSAIMKLVAQAGTCPPQAAKIIDNFTKSKDVDLQQRCIEFQNVITSAPHILGEILPVDASCEDVQV 617
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BLAST of mRNA_H-canaliculatus_F_contig10285.299.1 vs. uniprot
Match: A0A7S1B412_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B412_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.170e-15
Identity = 47/108 (43.52%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    1 MAWVLGEYGSLASPPRGPREVSTALCAVASGPSFRDPTTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVE 324
            MAWVLGEY  LA        +   + A+A  P    P+T  ++V A+MKL AQ+G   P   H++  +++S+  DLQQRCLEF  +       +A VLPVDASCED+E
Sbjct:  598 MAWVLGEYAYLAE--ESLDAIVIKISALAQKPGHA-PSTKKYLVAAIMKLVAQAGTCPPVATHVIDDFTRSRDVDLQQRCLEFQGMLATANHLLAEVLPVDASCEDIE 702
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BLAST of mRNA_H-canaliculatus_F_contig10285.299.1 vs. uniprot
Match: A0A0W8BWE5_PHYNI (AP-4 complex subunit epsilon n=8 Tax=Phytophthora TaxID=4783 RepID=A0A0W8BWE5_PHYNI)

HSP 1 Score: 79.3 bits (194), Expect = 5.600e-15
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:    1 MAWVLGEYGSLASPPRGPREVSTALCAVASGPSFRDPTTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEV 327
            MAWVLGEYG L S      E+   L  +   P  ++ TT G+V++A+ K++AQ G        ++  Y  S+ +DLQQRC E+L L +  P  M  V P DASCED+EV
Sbjct:  495 MAWVLGEYGYL-SDAMELEEICERLVELVDRPFDQEDTTRGYVLSAVTKITAQMGHTIDVADAMMEKYKNSRSTDLQQRCFEYLALTKNFPL-MNEVFPEDASCEDIEV 601
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BLAST of mRNA_H-canaliculatus_F_contig10285.299.1 vs. uniprot
Match: A0A7S3HNE1_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNE1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.030e-14
Identity = 49/109 (44.95%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:    1 MAWVLGEYGSLASPPRGPREVSTALCAVASGPSFRDPTTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEV 327
            +AWVLGEYG L S      ++   LC +       DP T   VVTA+ KL AQ+G     V   +  YS+S   D+QQRCLEF  L +  P  +  VLPVDASCED+E+
Sbjct:  495 VAWVLGEYGFL-STSCSLEQIMDKLCQLTL--QCNDPLTRAHVVTAISKLVAQNGGCPAKVLAFMDRYSRSVNLDVQQRCLEFKALLKH-PNTLVEVLPVDASCEDIEI 599
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BLAST of mRNA_H-canaliculatus_F_contig10285.299.1 vs. uniprot
Match: M4BID5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BID5_HYAAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.100e-14
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:    1 MAWVLGEYGSLASPPRGPREVSTALCAVASGPSFRDPTTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEV 327
            M+WVLGEYG L S      E+   L  +   P  ++ TT G+V++A+ K++AQ G        ++  Y  S+ +DLQQRC E+L   +  P  M  V P DASCED+EV
Sbjct:  117 MSWVLGEYGYL-SDAMELEEICERLVELVDRPFSQEDTTRGYVLSAVTKITAQMGHTIDVADAMMKKYKNSRSTDLQQRCFEYLAFTKNFPL-MNEVFPEDASCEDIEV 223
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BLAST of mRNA_H-canaliculatus_F_contig10285.299.1 vs. uniprot
Match: M4BIE3_HYAAE (AP4E_app_platf domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIE3_HYAAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.570e-14
Identity = 44/109 (40.37%), Postives = 62/109 (56.88%), Query Frame = 1 
Query:    1 MAWVLGEYGSLASPPRGPREVSTALCAVASGPSFRDPTTCGFVVTALMKLSAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPVDASCEDVEV 327
            M+WVLGEYG L S      E+   L  +   P  ++ TT G+V++A+ K++AQ G        ++  Y  S+ +DLQQRC E+L   +  P  M  V P DASCED+EV
Sbjct:  495 MSWVLGEYGYL-SDAMELEEICERLVELVDRPFSQEDTTRGYVLSAVTKITAQMGHTIDVADAMMKKYKNSRSTDLQQRCFEYLAFTKNFPL-MNEVFPEDASCEDIEV 601
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10285.299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5Q3_9PHAE1.110e-5693.58AP4E_app_platf domain-containing protein n=2 Tax=E... [more]
A0A835Z519_9STRA3.440e-2655.96AP-2 complex subunit alpha n=1 Tax=Tribonema minus... [more]
A0A7S3XR32_HETAK1.180e-2358.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9D583_9STRA2.630e-1950.00AP-2 complex subunit alpha n=1 Tax=Nannochloropsis... [more]
A0A7S3VAQ8_9STRA8.040e-1843.12Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1B412_9STRA1.170e-1543.52Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A0W8BWE5_PHYNI5.600e-1542.20AP-4 complex subunit epsilon n=8 Tax=Phytophthora ... [more]
A0A7S3HNE1_9STRA1.030e-1444.95Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
M4BID5_HYAAE2.100e-1440.37Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
M4BIE3_HYAAE3.570e-1440.37AP4E_app_platf domain-containing protein n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10285contigH-canaliculatus_F_contig10285:3848..4692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue2.7e-49
Seed eggNOG ortholog2880.D7FX42
Preferred nameAP4E1
KEGG koko:K12400,ko:K20164
KEGG Pathwayko04142,map04142
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCoatomer protein complex, gamma sub-unit
Ec32 orthologEc-10_004220.1
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928662.5510495-CDS-H-canaliculatus_F_contig10285:3847..40111622928662.5510495-CDS-H-canaliculatus_F_contig10285:3847..4011Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10285 3848..4011 +
1696845517.5089252-CDS-H-canaliculatus_F_contig10285:3847..40111696845517.5089252-CDS-H-canaliculatus_F_contig10285:3847..4011Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10285 3848..4011 +
1622928662.5647516-CDS-H-canaliculatus_F_contig10285:4529..46921622928662.5647516-CDS-H-canaliculatus_F_contig10285:4529..4692Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10285 4530..4692 +
1696845517.5208976-CDS-H-canaliculatus_F_contig10285:4529..46921696845517.5208976-CDS-H-canaliculatus_F_contig10285:4529..4692Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10285 4530..4692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10285.299.1prot_H-canaliculatus_F_contig10285.299.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10285 3848..4692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10285.299.1

>prot_H-canaliculatus_F_contig10285.299.1 ID=prot_H-canaliculatus_F_contig10285.299.1|Name=mRNA_H-canaliculatus_F_contig10285.299.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
MAWVLGEYGSLASPPRGPREVSTALCAVASGPSFRDPTTCGFVVTALMKL
SAQSGEVSPPVAHLLTLYSQSKQSDLQQRCLEFLQLAREGPAAMAAVLPV
DASCEDVEV
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mRNA from alignment at H-canaliculatus_F_contig10285:3848..4692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10285.299.1 ID=mRNA_H-canaliculatus_F_contig10285.299.1|Name=mRNA_H-canaliculatus_F_contig10285.299.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=845bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10285:3848..4692+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTGGGTTCTCGGCGAGTACGGGTCCCTAGCGTCTCCGCCACGGGG
CCCCCGTGAAGTGTCCACTGCGCTCTGCGCGGTGGCATCCGGGCCGTCGT
TCCGTGACCCGACCACGTGTGGCTTCGTCGTGACGGCGCTCATGAAGCTA
TCGGCGCAGTCGGGGTGAGAGAGAGAGAGAGAGGGGTTCGGGGGGAGAAG
GGAGAAGGAGGCGGAGGCACAGAAGCGAGTCGAGTGGAGAGAAAATCGTG
CTTGTGTGTCTGTGTGTGCGTGTGTGTGTGTTGTGTGTGTGTGTGTGTGT
GGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGA
CAGAGACAGAGACAGAGAGACTATCACCAAGGTTGAAAAATCACTAGCAC
GAGGTTGTCTTATTCGAGTGGAGCGCAGGACCTGCCCTTGATTCCCGCCT
GCGCGCGGGTTAGGCCATGCGAGTACTCGCGGGTTTGGCCTAAGCCCTTG
TTAAACCTTCCCCCCTGTAGTGTTCCTGCCCCGCCGATGTGTCGCGAGGG
CTTTTGGTTGACCGCTGACCGGATCCCCCCGCCCCCAGGGTTAAGCGTGC
ACACTTCTTTGTATCTCGAGCCTTCACGATCCTTTTTTCTTGGCCTTTTT
CGCTTTTTCGCTTTCGTTTTTTTTTTCGCCAGGGAGGTATCGCCGCCTGT
GGCACATCTGCTAACGCTGTATTCGCAGTCCAAGCAGTCGGACCTACAGC
AGCGCTGCCTGGAGTTCTTGCAGCTGGCGAGGGAGGGACCGGCGGCCATG
GCGGCCGTGCTTCCTGTGGACGCGAGCTGCGAAGATGTAGAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10285:3848..4692+

>mRNA_H-canaliculatus_F_contig10285.299.1 ID=mRNA_H-canaliculatus_F_contig10285.299.1|Name=mRNA_H-canaliculatus_F_contig10285.299.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10285:3848..4692+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGTGGGTTCTCGGCGAGTACGGGTCCCTAGCGTCTCCGCCACGGGG
CCCCCGTGAAGTGTCCACTGCGCTCTGCGCGGTGGCATCCGGGCCGTCGT
TCCGTGACCCGACCACGTGTGGCTTCGTCGTGACGGCGCTCATGAAGCTA
TCGGCGCAGTCGGGATGGCGTGGGTTCTCGGCGAGTACGGGTCCCTAGCG
TCTCCGCCACGGGGCCCCCGTGAAGTGTCCACTGCGCTCTGCGCGGTGGC
ATCCGGGCCGTCGTTCCGTGACCCGACCACGTGTGGCTTCGTCGTGACGG
CGCTCATGAAGCTATCGGCGCAGTCGGGGGAGGTATCGCCGCCTGTGGCA
CATCTGCTAACGCTGTATTCGCAGTCCAAGCAGTCGGACCTACAGCAGCG
CTGCCTGGAGTTCTTGCAGCTGGCGAGGGAGGGACCGGCGGCCATGGCGG
CCGTGCTTCCTGTGGACGCGAGCTGCGAAGATGTAGAGGTGGGAGGTATC
GCCGCCTGTGGCACATCTGCTAACGCTGTATTCGCAGTCCAAGCAGTCGG
ACCTACAGCAGCGCTGCCTGGAGTTCTTGCAGCTGGCGAGGGAGGGACCG
GCGGCCATGGCGGCCGTGCTTCCTGTGGACGCGAGCTGCGAAGATGTAGA
GGTG
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