mRNA_H-canaliculatus_F_contig10284.298.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10284.298.1
Unique NamemRNA_H-canaliculatus_F_contig10284.298.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10284.298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10284contigH-canaliculatus_F_contig10284:3289..3722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size434
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10284.298.1prot_H-canaliculatus_F_contig10284.298.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10284 3346..3705 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928662.4639623-UTR-H-canaliculatus_F_contig10284:3288..33451622928662.4639623-UTR-H-canaliculatus_F_contig10284:3288..3345Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10284 3289..3345 +
1696845517.4818294-UTR-H-canaliculatus_F_contig10284:3288..33451696845517.4818294-UTR-H-canaliculatus_F_contig10284:3288..3345Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10284 3289..3345 +
1622928662.5010672-UTR-H-canaliculatus_F_contig10284:3705..37221622928662.5010672-UTR-H-canaliculatus_F_contig10284:3705..3722Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10284 3706..3722 +
1696845517.4996583-UTR-H-canaliculatus_F_contig10284:3705..37221696845517.4996583-UTR-H-canaliculatus_F_contig10284:3705..3722Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10284 3706..3722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928662.4768543-CDS-H-canaliculatus_F_contig10284:3345..37051622928662.4768543-CDS-H-canaliculatus_F_contig10284:3345..3705Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10284 3346..3705 +
1696845517.4907296-CDS-H-canaliculatus_F_contig10284:3345..37051696845517.4907296-CDS-H-canaliculatus_F_contig10284:3345..3705Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10284 3346..3705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10284.298.1

>prot_H-canaliculatus_F_contig10284.298.1 ID=prot_H-canaliculatus_F_contig10284.298.1|Name=mRNA_H-canaliculatus_F_contig10284.298.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=120bp
MPHIKNEHANTPDLRQTRRHATLPRGTTREMASTPLREGLRLHKAARRGW
ISFCSTSSIIPTIHQRTPLISECSALSSIEYMTRMAHTLWTALRQFCLRR
WMLCSLVALNHPASSSSPP*
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mRNA from alignment at H-canaliculatus_F_contig10284:3289..3722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10284.298.1 ID=mRNA_H-canaliculatus_F_contig10284.298.1|Name=mRNA_H-canaliculatus_F_contig10284.298.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=434bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10284:3289..3722+ (Hapterophycus canaliculatus Oshoro5f female)
GTCACAATCTCCCATCCCCTCATCAAGCTGGCAGTCCCGCCTGGGGTGGA
TTACAGTATGCCCCACATCAAAAACGAACATGCGAACACACCCGATCTCC
GCCAAACTCGACGACACGCCACACTGCCACGCGGCACCACACGCGAAATG
GCATCCACCCCACTACGCGAGGGGCTTCGACTCCACAAAGCTGCAAGACG
CGGGTGGATCTCTTTCTGCAGCACATCAAGTATCATCCCTACGATTCACC
AACGCACACCTCTGATCTCCGAATGTTCTGCCTTGTCCTCGATCGAGTAC
ATGACTCGCATGGCCCATACTTTGTGGACAGCATTACGCCAATTCTGTCT
TCGTAGGTGGATGTTGTGCTCTTTGGTTGCTTTGAACCACCCTGCTAGCT
CTTCATCTCCCCCATAGGAGTCGATGGTTGGAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10284:3289..3722+

>mRNA_H-canaliculatus_F_contig10284.298.1 ID=mRNA_H-canaliculatus_F_contig10284.298.1|Name=mRNA_H-canaliculatus_F_contig10284.298.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10284:3289..3722+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCCCACATCAAAAACGAACATGCGAACACACCCGATCTCCGCCAAAC
TCGACGACACGCCACACTGCCACGCGGCACCACACGCGAAATGGCATCCA
CCCCACTACGCGAGGGGCTTCGACTCCACAAAGCTGCAAGACGCGGGTGG
ATCTCTTTCTGCAGCACATCAAGTATCATCCCTACGATTCACCAACGCAC
ACCTCTGATCTCCGAATGTTCTGCCTTGTCCTCGATCGAGTACATGACTC
GCATGGCCCATACTTTGTGGACAGCATTACGCCAATTCTGTCTTCGTAGG
TGGATGTTGTGCTCTTTGGTTGCTTTGAACCACCCTGCTAGCTCTTCATC
TCCCCCATAGATGCCCCACATCAAAAACGAACATGCGAACACACCCGATC
TCCGCCAAACTCGACGACACGCCACACTGCCACGCGGCACCACACGCGAA
ATGGCATCCACCCCACTACGCGAGGGGCTTCGACTCCACAAAGCTGCAAG
ACGCGGGTGGATCTCTTTCTGCAGCACATCAAGTATCATCCCTACGATTC
ACCAACGCACACCTCTGATCTCCGAATGTTCTGCCTTGTCCTCGATCGAG
TACATGACTCGCATGGCCCATACTTTGTGGACAGCATTACGCCAATTCTG
TCTTCGTAGGTGGATGTTGTGCTCTTTGGTTGCTTTGAACCACCCTGCTA
GCTCTTCATCTCCCCCATAG
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