mRNA_H-canaliculatus_F_contig10282.296.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10282.296.1
Unique NamemRNA_H-canaliculatus_F_contig10282.296.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10282.296.1 vs. uniprot
Match: D8LJ25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ25_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 8.180e-18
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKQDGAFLGYLPEKNTGV 123
            MLPLLK RAAKPRVLLAAMSRYNNKQDG FLGYLPEKN GV
Sbjct:    1 MLPLLKLRAAKPRVLLAAMSRYNNKQDGPFLGYLPEKNAGV 41
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BLAST of mRNA_H-canaliculatus_F_contig10282.296.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.020e-15
Identity = 37/41 (90.24%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKQDGAFLGYLPEKNTGV 123
            M+PLLKRRAAKPRVLLAA+SRYN KQDGAFLGYLPEK+TGV
Sbjct:  445 MVPLLKRRAAKPRVLLAALSRYNEKQDGAFLGYLPEKSTGV 485
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BLAST of mRNA_H-canaliculatus_F_contig10282.296.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.180e-15
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKQDGAFLGYLPEKNTGV 123
            MLPLLKRRAAKPRVLLAAMSRYN KQDG FLGYLP+KN GV
Sbjct:  781 MLPLLKRRAAKPRVLLAAMSRYNEKQDGTFLGYLPDKNAGV 821
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BLAST of mRNA_H-canaliculatus_F_contig10282.296.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.300e-13
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKQDGAFLGYLPEKNTGV 123
            M+PLLKRRAA  RVLLAAMSRYNNKQDGAFLGYLPEKN  V
Sbjct:  812 MVPLLKRRAATLRVLLAAMSRYNNKQDGAFLGYLPEKNVRV 852
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BLAST of mRNA_H-canaliculatus_F_contig10282.296.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.250e-10
Identity = 36/52 (69.23%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKQDGAFLGY-----------LPEKNTGV 123
            MLPLLKRRAAKPRVLLAAMSRYNNK DGAFLG            LP KN G 
Sbjct:  391 MLPLLKRRAAKPRVLLAAMSRYNNKHDGAFLGXXXXXXXXXXXXLPGKNAGA 442
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BLAST of mRNA_H-canaliculatus_F_contig10282.296.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.680e-10
Identity = 31/40 (77.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKQDGAFLGYLPEKNTG 120
            MLP LKRRA KPRV LA +SRYNNKQDG FLGY P KN G
Sbjct:  364 MLPGLKRRATKPRVALAPLSRYNNKQDGPFLGYTPSKNGG 403
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BLAST of mRNA_H-canaliculatus_F_contig10282.296.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 3.380e-10
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    4 LPLLKRRAAKPRVLLAAMSRYNNKQDGAFLGYLPEKN 114
            LP LKRRA KP VLLAA+SRYNNKQDG FLGY P+KN
Sbjct:  150 LPGLKRRATKPCVLLAALSRYNNKQDGPFLGYSPDKN 186
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10282.296.1 vs. uniprot
Match: D8LPN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN9_ECTSI)

HSP 1 Score: 46.6 bits (109), Expect = 7.840e-6
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 MLPLLKRRAAKPRVLLAAMSRYNNKQDGAFLGYLPEKNTG 120
            MLP+LKRR  KPR LLAA+SRY +KQD +F G+ P  + G
Sbjct:    1 MLPVLKRRVTKPRALLAALSRYIDKQDRSFTGF-PGNHVG 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10282.296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LJ25_ECTSI8.180e-1892.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5L0_9PHAE3.020e-1590.24Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE4.180e-1590.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE3.300e-1387.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE1.250e-1069.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE1.680e-1077.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C8_ECTSI3.380e-1081.08EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LPN9_ECTSI7.840e-660.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10282contigH-canaliculatus_F_contig10282:563..795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D7G2C8
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size126
Cds size126
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928662.4008994-CDS-H-canaliculatus_F_contig10282:562..6241622928662.4008994-CDS-H-canaliculatus_F_contig10282:562..624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10282 563..624 +
1696845517.4557002-CDS-H-canaliculatus_F_contig10282:562..6241696845517.4557002-CDS-H-canaliculatus_F_contig10282:562..624Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10282 563..624 +
1622928662.4199088-CDS-H-canaliculatus_F_contig10282:731..7951622928662.4199088-CDS-H-canaliculatus_F_contig10282:731..795Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10282 732..795 +
1696845517.4678886-CDS-H-canaliculatus_F_contig10282:731..7951696845517.4678886-CDS-H-canaliculatus_F_contig10282:731..795Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10282 732..795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10282.296.1prot_H-canaliculatus_F_contig10282.296.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10282 563..795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10282.296.1

>prot_H-canaliculatus_F_contig10282.296.1 ID=prot_H-canaliculatus_F_contig10282.296.1|Name=mRNA_H-canaliculatus_F_contig10282.296.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=42bp
MLPLLKRRAAKPRVLLAAMSRYNNKQDGAFLGYLPEKNTGV*
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mRNA from alignment at H-canaliculatus_F_contig10282:563..795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10282.296.1 ID=mRNA_H-canaliculatus_F_contig10282.296.1|Name=mRNA_H-canaliculatus_F_contig10282.296.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=233bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10282:563..795+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
AGCCATGTCTAGGTGCGTGGTGTTGTTTGATTCTTCGCTGTGTTTTGCGG
TCAATGCACAATCTGAAATAGGTAGGCTAAAACACATTGTTTCCCCCTCT
CCCCGCGTCTTATCGACAGGTACAACAACAAGCAGGATGGAGCTTTCCTC
GGGTACTTGCCGGAAAAAAACACGGGAGTCTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10282:563..795+

>mRNA_H-canaliculatus_F_contig10282.296.1 ID=mRNA_H-canaliculatus_F_contig10282.296.1|Name=mRNA_H-canaliculatus_F_contig10282.296.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=252bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10282:563..795+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCGTGTGCTCTTGGC
AGCCATGTCTAGATGCTGCCGCTTCTGAAGCGGAGGGCGGCGAAGCCTCG
TGTGCTCTTGGCAGCCATGTCTAGGTACAACAACAAGCAGGATGGAGCTT
TCCTCGGGTACTTGCCGGAAAAAAACACGGGAGTCTAAGTACAACAACAA
GCAGGATGGAGCTTTCCTCGGGTACTTGCCGGAAAAAAACACGGGAGTCT
AA
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