mRNA_H-canaliculatus_F_contig10280.295.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10280.295.1
Unique NamemRNA_H-canaliculatus_F_contig10280.295.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10280.295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10280contigH-canaliculatus_F_contig10280:434..1258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size513
Cds size270
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10280.295.1prot_H-canaliculatus_F_contig10280.295.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10280 434..1015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928662.2322006-CDS-H-canaliculatus_F_contig10280:433..7001622928662.2322006-CDS-H-canaliculatus_F_contig10280:433..700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10280 434..700 +
1696845517.39005-CDS-H-canaliculatus_F_contig10280:433..7001696845517.39005-CDS-H-canaliculatus_F_contig10280:433..700Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10280 434..700 +
1622928662.2463758-CDS-H-canaliculatus_F_contig10280:1012..10151622928662.2463758-CDS-H-canaliculatus_F_contig10280:1012..1015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10280 1013..1015 +
1696845517.4006112-CDS-H-canaliculatus_F_contig10280:1012..10151696845517.4006112-CDS-H-canaliculatus_F_contig10280:1012..1015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10280 1013..1015 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928662.270074-UTR-H-canaliculatus_F_contig10280:1015..12581622928662.270074-UTR-H-canaliculatus_F_contig10280:1015..1258Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10280 1016..1258 +
1696845517.4167926-UTR-H-canaliculatus_F_contig10280:1015..12581696845517.4167926-UTR-H-canaliculatus_F_contig10280:1015..1258Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10280 1016..1258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10280.295.1

>prot_H-canaliculatus_F_contig10280.295.1 ID=prot_H-canaliculatus_F_contig10280.295.1|Name=mRNA_H-canaliculatus_F_contig10280.295.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
VHHGVQSCGNIFTRDRGGDVRRARAGGGRRGTSSFKSAPGKHTHTNTHAQ
THKSVCLVRLRPPRQQRVRLMKRRLVRRESNSVSPRFWT*
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mRNA from alignment at H-canaliculatus_F_contig10280:434..1258+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10280.295.1 ID=mRNA_H-canaliculatus_F_contig10280.295.1|Name=mRNA_H-canaliculatus_F_contig10280.295.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=825bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10280:434..1258+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCATCACGGAGTTCAATCCTGTGGGAATATTTTTACGAGGGATAGGGG
GGGCGACGTGAGGCGAGCGCGCGCGGGGGGGGGGCGGCGAGGAACTTCAA
GTTTCAAATCTGCTCCAGGAAAGCACACACACACAAACACACACGCACAA
ACACACAAATCAGTTTGTCTCGTCCGTCTTCGGCCGCCACGTCAACAGAG
AGTCCGGCTGATGAAGCGACGGCTTGTTCGCCGAGAGTCGAACTCTGTTT
CCCCCCGCTTTTGGACGGCCTAGTCGTACACCGGCACCGCGGAATGGCTC
GCCGACACAGCGTGTTCGTTGCTTCTGCGCGCTCCGCGCCGACGACGGCG
GCGGCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGCTA
CAGCCGACGTTCATTAAGTTCGATCTCCACGCGAGAAGGCGAGAAAGAAG
ACGGGCGGCTTGCGGGCCGGTAGGACGGTAGGACACGACAAGACAGGGCC
TCAACGACGGCCGAACGACCGGAAGACTCCGGGAAGCTGAGAAGAAAGCG
ATGACAGAGGCCCGCGGTCAGCTAGCAAGTAAAGGGCAGCTGTTCGCGGC
GATTCGGAAATATGGCGCAGTCTTTCGAGCCCGGACTGGACCACGGGGCA
AAAAGAGGTGACCAAGAAGCAACTGGGCGGAAAAGTGTCGATTGATGCCC
GAACTCACCGAGTCCCGAGAACTCGGACTTGGCCACGTTCCAGCCCTTCT
TACCAAAGAGATCGGTCAGGGCGAAAGATTTCTCGATCTGCTCCGGCGTC
AACACCACATCCTCAGCAAATTCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10280:434..1258+

>mRNA_H-canaliculatus_F_contig10280.295.1 ID=mRNA_H-canaliculatus_F_contig10280.295.1|Name=mRNA_H-canaliculatus_F_contig10280.295.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10280:434..1258+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCATCACGGAGTTCAATCCTGTGGGAATATTTTTACGAGGGATAGGGG
GGGCGACGTGAGGCGAGCGCGCGCGGGGGGGGGGCGGCGAGGAACTTCAA
GTTTCAAATCTGCTCCAGGAAAGCACACACACACAAACACACACGCACAA
ACACACAAATCAGTTTGTCTCGTCCGTCTTCGGCCGCCACGTCAACAGAG
AGTCCGGCTGATGAAGCGACGGCTTGTTCGCCGAGAGTCGAACTCTGTTT
CCCCCCGCTTTTGGACGGTCCATCACGGAGTTCAATCCTGTGGGAATATT
TTTACGAGGGATAGGGGGGGCGACGTGAGGCGAGCGCGCGCGGGGGGGGG
GCGGCGAGGAACTTCAAGTTTCAAATCTGCTCCAGGAAAGCACACACACA
CAAACACACACGCACAAACACACAAATCAGTTTGTCTCGTCCGTCTTCGG
CCGCCACGTCAACAGAGAGTCCGGCTGATGAAGCGACGGCTTGTTCGCCG
AGAGTCGAACTCTGTTTCCCCCCGCTTTTGGACGTAATAA
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