mRNA_H-canaliculatus_F_contig1028.292.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1028.292.1 vs. uniprot
Match: D7G1J1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J1_ECTSI) HSP 1 Score: 560 bits (1442), Expect = 4.760e-186 Identity = 361/655 (55.11%), Postives = 405/655 (61.83%), Query Frame = 3 Query: 357 PPKILARNHAVQAVGETYFRVALLGMAAASVLAIVAVSIGSTRGMFEFRIDRCDCLLTSEAQNAVDEGQDCVFGQDMLGVNIGWKSFVIDHAVSTEGCLDGWEGTTDIGTPFGDGIYKKKTEVYGNGATGAADACVGLFVVSAAIAVIMYKTVKMSYAGPGSIYSIGLHNIAMLCLLLSIASAISVMAFWGRVQGKLGNLSSSLAVTLFRATLDVCQDDWDTVGFPIDDEE----FCEAAPWTFDVPLYASWTAIAHVGIMFLASVWILGRSALVEGILDGSKLASGKTVTPRVVEFEQAVGRALATTEDPDYDVPGNKLYTGEQNIMIRPYPLPGSVKKVAKAAEALVSPLRNMSPTRSHARGKSKAAGLSRTSNVVDNNEGFTPKI-IGSDLNGEEGYMLNSGSTGSAAGYNESQGPPSPGPVRPIPKPLL---SKAAXXXXXXXXXXXXXXXXQPGGKHASSEESEIRGTDGSKPTTGGGHARQSSRTTMMPKMPSLGGFGRKTXXXXXXXXXXXXXXXXXXXXGDVDSDEEGSSSSVIVLPVEGDGMGAGAAPGTRHGKTRSEIDWNSIMEAGGSGDGNTGVEKSHQEG-KGDGSPHLSPSMLGDLDMMFNGPSVKDGLTLGAITEDPREDMISEFTITPRKKGSATQFEV 2294 PPK+ RN AVQAVGE YF+VAL V+IGWKSFVID A STEGCLDGWEGT DIG+PFGDGIY+KK+ VYGNGATGAADA VGLFVVSA IA+IM+KTVKMSY GPGSIYSIGLHNIA++CLLLS+AS IS+ AFWGR+QGKLG++ SSLA TLF ATLDVC+DDWDTVGFP+ + E FC+A PW F+VPLYA WTAIAHV +MFL SVWIL +S LVEGILDGSKL GK VTPRVVE+EQAVGRALATTEDPDYDV NKLYTGE NIMIRPYPLPGSVKKVAKAAEALVSPLR M +G S T + G PKI +G D+ G+ + G+N S SPGPV+ IP+ SKAA XXXXXXXXXXXXXXX PG KP GG R +S S+EE V P +G G HGKTRSEIDW IM+AG N G K + +G + D SPHLS MLGDLDMMF+GPSVKDGLTLGAITEDPREDM+SEFT+TP+ +GSAT FEV Sbjct: 3 PPKLAMRNQAVQAVGEKYFQVAL--------------------------------------------------------VDIGWKSFVIDKAYSTEGCLDGWEGTKDIGSPFGDGIYRKKSAVYGNGATGAADASVGLFVVSAFIAIIMFKTVKMSYTGPGSIYSIGLHNIAVMCLLLSVASGISIAAFWGRIQGKLGDMESSLAATLFMATLDVCEDDWDTVGFPVGEGESEEIFCQAKPWNFEVPLYAGWTAIAHVAVMFLTSVWILTKSGLVEGILDGSKLVGGKAVTPRVVEYEQAVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEALVSPLRKM-------QGGSPKHTKDNTLRTGER-AGVRPKIALGGDIEGQ-----------ATGGHNLS----SPGPVQSIPRATGAPGSKAATXXXXXXXXXXXXXXXLPG-----------------KP--GGXXXRSASA-----------------------------------------SEEE-------VSPAIRSSIGKG------HGKTRSEIDWGRIMDAG----DNDGTAKQYDDGDEDDDSPHLSSVMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKTRGSATHFEV 501
BLAST of mRNA_H-canaliculatus_F_contig1028.292.1 vs. uniprot
Match: A0A6H5L9G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G0_9PHAE) HSP 1 Score: 254 bits (649), Expect = 3.610e-72 Identity = 202/414 (48.79%), Postives = 236/414 (57.00%), Query Frame = 3 Query: 1125 MFLASVWILGRSALVEGILDGSKLASGKTVTPRVVEFEQAVGRALATTEDPDYDVPGNKLYTGEQNIMIRPYPLPGSVKKVAKAAEALVSPLRNMSPTRSHARGKSKAAGLSRTSNVVDNNEGFTPKI-IGSDLNGEEGYMLNSGSTGSAAGYNESQGPPSPGPVRPIPKPLL---SKAAXXXXXXXXXXXXXXXXQP-------------GGKHASSEESEIRGTDGSKPTTGGGHARQSSRTTMMPK--MPSLGGFGRK----TXXXXXXXXXXXXXXXXXXXXGDVDSDEEGSSSSVIVLPVEGDGMGAGAAPGTRHGKTRSEIDWNSIMEAGGSGDGNTGVEKSHQEG-KGDGSPHLSPSMLGDLDMMFNGPSVKDGLTLGAITEDPREDMISEFTITPRKKGSATQFEV 2294 MFL SVWIL +S LVEGILDGSKL GK VT AVGRALATTEDPDYDV NKLYTGE NIMIRPYPLPGSVKKVAKAAE LVSPLR M + H + + G S G P I +G+D+ G+ + G+N S SPGPV IP+ + SKAA XXXXXXXXXXXXXXX GG+ AS+ E E+ S ++G R++ + P+ M S R+ GDV++D S +V P A G H KTRSEIDW IM+AG N G KS+ +G + D SPHLS MLGDLDMMF+GPSVKDGLTLGAITEDPREDM+SEFT+TP+ +GSAT FEV Sbjct: 1 MFLTSVWILSKSGLVEGILDGSKLVDGKAVT--------AVGRALATTEDPDYDVSDNKLYTGEANIMIRPYPLPGSVKKVAKAAEVLVSPLRKMGGSPKHTKNNTLRTGESA---------GVRPNIALGADIEGQ-----------APGGHNLS----SPGPVESIPRAAVAPASKAATXXXXXXXXXXXXXXXXXXXXXXXXXXPGGEGGRSASASEEEVSPAIRSSGSSGRTLNRRAHAMGIKPQSSMTSHHIIRRRQITMVNRDHVSTSKYHNKGPWDRDAGDVETDS--SLGNVARSP-------ASVVSGKGHEKTRSEIDWGRIMDAG----HNDGTAKSYDDGDEDDDSPHLSSGMLGDLDMMFHGPSVKDGLTLGAITEDPREDMVSEFTMTPKARGSATHFEV 369 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1028.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1028.292.1 >prot_H-canaliculatus_F_contig1028.292.1 ID=prot_H-canaliculatus_F_contig1028.292.1|Name=mRNA_H-canaliculatus_F_contig1028.292.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=660bp MVLGMTKKQNSKRPPKILARNHAVQAVGETYFRVALLGMAAASVLAIVAVback to top mRNA from alignment at H-canaliculatus_F_contig1028:5946..19271- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1028.292.1 ID=mRNA_H-canaliculatus_F_contig1028.292.1|Name=mRNA_H-canaliculatus_F_contig1028.292.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=13326bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1028:5946..19271- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1028:5946..19271- >mRNA_H-canaliculatus_F_contig1028.292.1 ID=mRNA_H-canaliculatus_F_contig1028.292.1|Name=mRNA_H-canaliculatus_F_contig1028.292.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3960bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1028:5946..19271- (Hapterophycus canaliculatus Oshoro5f female)back to top |