mRNA_H-canaliculatus_F_contig1028.291.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1028.291.1
Unique NamemRNA_H-canaliculatus_F_contig1028.291.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1028.291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1028contigH-canaliculatus_F_contig1028:5222..5880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size659
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928661.566381-CDS-H-canaliculatus_F_contig1028:5221..55871622928661.566381-CDS-H-canaliculatus_F_contig1028:5221..5587Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1028 5222..5587 +
1696845517.0552485-CDS-H-canaliculatus_F_contig1028:5221..55871696845517.0552485-CDS-H-canaliculatus_F_contig1028:5221..5587Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1028 5222..5587 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928661.5792286-UTR-H-canaliculatus_F_contig1028:5587..58801622928661.5792286-UTR-H-canaliculatus_F_contig1028:5587..5880Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1028 5588..5880 +
1696845517.0673876-UTR-H-canaliculatus_F_contig1028:5587..58801696845517.0673876-UTR-H-canaliculatus_F_contig1028:5587..5880Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1028 5588..5880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1028.291.1prot_H-canaliculatus_F_contig1028.291.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1028 5222..5587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1028.291.1

>prot_H-canaliculatus_F_contig1028.291.1 ID=prot_H-canaliculatus_F_contig1028.291.1|Name=mRNA_H-canaliculatus_F_contig1028.291.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp
RPNPWTKYNVELLDYAQRNYSVQFYHFSKAIFRPERDFRTDSRLFQRVVD
DDCNSAIHVSDSAFLQAVSHTDSRNKIRLEQRTGLCVVLQKPKPLHQRSN
HKASTHQDHPLGERVWRDPCT*
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mRNA from alignment at H-canaliculatus_F_contig1028:5222..5880+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1028.291.1 ID=mRNA_H-canaliculatus_F_contig1028.291.1|Name=mRNA_H-canaliculatus_F_contig1028.291.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=659bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1028:5222..5880+ (Hapterophycus canaliculatus Oshoro5f female)
CGGCCAAATCCTTGGACGAAGTACAACGTAGAACTTCTTGATTACGCACA
AAGAAACTACTCCGTACAATTTTATCATTTTAGTAAAGCGATTTTTCGTC
CTGAGCGTGATTTTCGTACGGACTCCCGCCTGTTTCAACGAGTTGTCGAC
GACGATTGTAACAGCGCGATTCATGTATCAGACAGCGCATTTCTCCAGGC
GGTCTCGCATACGGACAGCCGGAACAAAATTCGCCTCGAACAGCGCACTG
GCTTATGTGTGGTCCTCCAAAAACCGAAACCATTACACCAACGGAGCAAC
CATAAAGCCAGCACCCATCAAGACCACCCTTTGGGTGAAAGAGTTTGGAG
GGACCCGTGTACTTGACGGATACTAAACCCGCCACTCTCCCACCCTAAAA
TACAATACATACACGTCTCTCACCATGACCGATTCCGGTCTGTCACGCGA
TGTTCGTGGTGCCTGTCCCCCCAATACCACGACGATGCTCGCTTAGCCCA
ACACCGTTACGATTGTCATCGCGCCATCGCTTTTGAAAGGATCGGATCGG
ACTCGACGTCTACCTGTCTTTCGTCGTGGACGGCAGTTTTTTCCCTTGTT
GCGTCATTTGCGACCCGTGCCCTTACTGTACGGTGACCATACTTCTCCAT
ACCCCCTTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1028:5222..5880+

>mRNA_H-canaliculatus_F_contig1028.291.1 ID=mRNA_H-canaliculatus_F_contig1028.291.1|Name=mRNA_H-canaliculatus_F_contig1028.291.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1028:5222..5880+ (Hapterophycus canaliculatus Oshoro5f female)
CGGCCAAATCCTTGGACGAAGTACAACGTAGAACTTCTTGATTACGCACA
AAGAAACTACTCCGTACAATTTTATCATTTTAGTAAAGCGATTTTTCGTC
CTGAGCGTGATTTTCGTACGGACTCCCGCCTGTTTCAACGAGTTGTCGAC
GACGATTGTAACAGCGCGATTCATGTATCAGACAGCGCATTTCTCCAGGC
GGTCTCGCATACGGACAGCCGGAACAAAATTCGCCTCGAACAGCGCACTG
GCTTATGTGTGGTCCTCCAAAAACCGAAACCATTACACCAACGGAGCAAC
CATAAAGCCAGCACCCATCAAGACCACCCTTTGGGTGAAAGAGTTTGGAG
GGACCCGTGTACTTGACGGCCAAATCCTTGGACGAAGTACAACGTAGAAC
TTCTTGATTACGCACAAAGAAACTACTCCGTACAATTTTATCATTTTAGT
AAAGCGATTTTTCGTCCTGAGCGTGATTTTCGTACGGACTCCCGCCTGTT
TCAACGAGTTGTCGACGACGATTGTAACAGCGCGATTCATGTATCAGACA
GCGCATTTCTCCAGGCGGTCTCGCATACGGACAGCCGGAACAAAATTCGC
CTCGAACAGCGCACTGGCTTATGTGTGGTCCTCCAAAAACCGAAACCATT
ACACCAACGGAGCAACCATAAAGCCAGCACCCATCAAGACCACCCTTTGG
GTGAAAGAGTTTGGAGGGACCCGTGTACTTGA
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